RNA–Protein interactions for RNA: ENST00000411146.1

RNU2-55P-201, Transcript of RNA, U2 small nuclear 55, pseudogene, humanhuman

BASIC

Gene RNU2-55P, Length 174 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU2-55P-201ENST00000411146 AEBP2Q6ZN18 517 aaPredicted RBP12.78□□□□□ -0.36
RNU2-55P-201ENST00000411146 CHIC1Q5VXU3 224 aa12.01□□□□□ -0.49
RNU2-55P-201ENST00000411146 SENP3Q9H4L4 574 aaPredicted RBP10.82□□□□□ -0.68
RNU2-55P-201ENST00000411146 PHF23Q9BUL5 403 aaPredicted RBP10.7□□□□□ -0.7
RNU2-55P-201ENST00000411146 FOXD1Q16676 465 aa10.15□□□□□ -0.78
RNU2-55P-201ENST00000411146 PPP6R1Q9UPN7 881 aa9.54□□□□□ -0.88
RNU2-55P-201ENST00000411146 PLPPR3Q6T4P5 718 aa9.53□□□□□ -0.88
RNU2-55P-201ENST00000411146 ADRA2BP18089 450 aa9.48□□□□□ -0.89
RNU2-55P-201ENST00000411146 MSH5O43196 834 aa9.46□□□□□ -0.9
RNU2-55P-201ENST00000411146 PIAS4Q8N2W9 510 aaPredicted RBP9.42□□□□□ -0.9
RNU2-55P-201ENST00000411146 POTEDQ86YR6 584 aa9.41□□□□□ -0.9
RNU2-55P-201ENST00000411146 MAPK8IP2Q13387 824 aaPredicted RBP8.76□□□□□ -1.01
RNU2-55P-201ENST00000411146 DMRT2Q9Y5R5 561 aa8.6□□□□□ -1.03
RNU2-55P-201ENST00000411146 SCAF1Q9H7N4 1312 aaKnown RBP8.52□□□□□ -1.05
RNU2-55P-201ENST00000411146 PPP4R3CPQ6ZMV5 832 aa8.43□□□□□ -1.06
RNU2-55P-201ENST00000411146 HOXD11P31277 338 aaPredicted RBP8.27□□□□□ -1.09
RNU2-55P-201ENST00000411146 CNKSR2Q8WXI2 1034 aa8.21□□□□□ -1.1
RNU2-55P-201ENST00000411146 DCAF8L1A6NGE4 600 aa8.2□□□□□ -1.1
RNU2-55P-201ENST00000411146 RNF216Q9NWF9 866 aaPredicted RBP8.16□□□□□ -1.1
RNU2-55P-201ENST00000411146 CACNB1Q02641 598 aaPredicted RBP8.15□□□□□ -1.1
RNU2-55P-201ENST00000411146 RNF39Q9H2S5 420 aa8.11□□□□□ -1.11
RNU2-55P-201ENST00000411146 NPM3O75607 178 aaKnown RBP8.02□□□□□ -1.13
RNU2-55P-201ENST00000411146 DNAJC5BQ9UF47 199 aa7.99□□□□□ -1.13
RNU2-55P-201ENST00000411146 NCBP3Q53F19 620 aaKnown RBP7.98□□□□□ -1.13
RNU2-55P-201ENST00000411146 C1QBPQ07021 282 aaKnown RBP7.96□□□□□ -1.14
RNU2-55P-201ENST00000411146 KCNA4P22459 653 aa7.92□□□□□ -1.14
RNU2-55P-201ENST00000411146 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.81□□□□□ -1.16
RNU2-55P-201ENST00000411146 U3KPZ7 1027 aaPredicted RBP7.72□□□□□ -1.17
RNU2-55P-201ENST00000411146 SLC4A2P04920 1241 aa7.71□□□□□ -1.18
RNU2-55P-201ENST00000411146 SPINK5Q9NQ38 1064 aaPredicted RBP7.66□□□□□ -1.18
RNU2-55P-201ENST00000411146 DSG3P32926 999 aa7.57□□□□□ -1.2
RNU2-55P-201ENST00000411146 CAPN15O75808 1086 aa7.55□□□□□ -1.2
RNU2-55P-201ENST00000411146 TRHP20396 242 aaPredicted RBP7.46□□□□□ -1.22
RNU2-55P-201ENST00000411146 ABCB7O75027 752 aa7.45□□□□□ -1.22
RNU2-55P-201ENST00000411146 SLC4A1APQ9BWU0 796 aaKnown RBP7.39□□□□□ -1.23
RNU2-55P-201ENST00000411146 ZNF219Q9P2Y4 722 aaPredicted RBP7.38□□□□□ -1.23
RNU2-55P-201ENST00000411146 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.37□□□□□ -1.23
RNU2-55P-201ENST00000411146 APLP2Q06481 763 aa7.37□□□□□ -1.23
RNU2-55P-201ENST00000411146 HNRNPUL2Q1KMD3 747 aaKnown RBP7.37□□□□□ -1.23
RNU2-55P-201ENST00000411146 SAMD1Q6SPF0 538 aaPredicted RBP7.35□□□□□ -1.23
RNU2-55P-201ENST00000411146 ATF5Q9Y2D1 282 aaPredicted RBP7.35□□□□□ -1.23
RNU2-55P-201ENST00000411146 POTEHQ6S545 545 aa7.34□□□□□ -1.23
RNU2-55P-201ENST00000411146 ZBTB22O15209 634 aa7.33□□□□□ -1.24
RNU2-55P-201ENST00000411146 MYCNP04198 464 aaPredicted RBP7.31□□□□□ -1.24
RNU2-55P-201ENST00000411146 FOXD4L1Q9NU39 408 aa7.27□□□□□ -1.25
RNU2-55P-201ENST00000411146 POLA2Q14181 598 aa7.26□□□□□ -1.25
RNU2-55P-201ENST00000411146 RBM42Q9BTD8 480 aaKnown RBP7.16□□□□□ -1.26
RNU2-55P-201ENST00000411146 CHRDL2Q6WN34 429 aa7.07□□□□□ -1.28
RNU2-55P-201ENST00000411146 OSCARQ8IYS5 282 aa7.03□□□□□ -1.28
RNU2-55P-201ENST00000411146 ZBTB12Q9Y330 459 aaPredicted RBP7.02□□□□□ -1.29
RNU2-55P-201ENST00000411146 AKT1S1Q96B36 256 aa7.01□□□□□ -1.29
RNU2-55P-201ENST00000411146 ATXN8OSP0DMR3 200 aa6.97□□□□□ -1.29
RNU2-55P-201ENST00000411146 MKRN4PQ13434 485 aaPredicted RBP6.97□□□□□ -1.29
RNU2-55P-201ENST00000411146 REM2Q8IYK8 340 aaPredicted RBP6.97□□□□□ -1.29
RNU2-55P-201ENST00000411146 CSRNP3Q8WYN3 585 aa6.97□□□□□ -1.29
RNU2-55P-201ENST00000411146 PIP4P2Q8N4L2 257 aa6.9□□□□□ -1.3
RNU2-55P-201ENST00000411146 PITPNM1O00562 1244 aa6.89□□□□□ -1.31
RNU2-55P-201ENST00000411146 FXR2P51116 673 aaKnown RBP eCLIP6.86□□□□□ -1.31
RNU2-55P-201ENST00000411146 EHMT2Q96KQ7 1210 aa6.86□□□□□ -1.31
RNU2-55P-201ENST00000411146 SP7Q8TDD2 431 aaPredicted RBP6.84□□□□□ -1.31
RNU2-55P-201ENST00000411146 SPDYE2BA6NHP3 402 aa6.83□□□□□ -1.32
RNU2-55P-201ENST00000411146 SPDYE6P0CI01 402 aa6.83□□□□□ -1.32
RNU2-55P-201ENST00000411146 FBLN2P98095 1184 aa6.83□□□□□ -1.32
RNU2-55P-201ENST00000411146 SPDYE2Q495Y8 402 aa6.83□□□□□ -1.32
RNU2-55P-201ENST00000411146 EVX2Q03828 476 aa6.79□□□□□ -1.32
RNU2-55P-201ENST00000411146 ZNF692Q9BU19 519 aaPredicted RBP6.77□□□□□ -1.33
RNU2-55P-201ENST00000411146 HAX1O00165 279 aa6.76□□□□□ -1.33
RNU2-55P-201ENST00000411146 SSUH2Q9Y2M2 353 aa6.76□□□□□ -1.33
RNU2-55P-201ENST00000411146 CLEC11AQ9Y240 323 aa6.75□□□□□ -1.33
RNU2-55P-201ENST00000411146 SPDYE1Q8NFV5 336 aaPredicted RBP6.72□□□□□ -1.33
RNU2-55P-201ENST00000411146 CHADLQ6NUI6 762 aa6.7□□□□□ -1.34
RNU2-55P-201ENST00000411146 PABPN1Q86U42 306 aaKnown RBP eCLIP6.7□□□□□ -1.34
RNU2-55P-201ENST00000411146 PRKAR2AP13861 404 aaKnown RBP6.69□□□□□ -1.34
RNU2-55P-201ENST00000411146 C19orf67A6NJJ6 358 aa6.64□□□□□ -1.35
RNU2-55P-201ENST00000411146 PRR29P0C7W0 189 aa6.6□□□□□ -1.35
RNU2-55P-201ENST00000411146 GABBR2O75899 941 aa6.55□□□□□ -1.36
RNU2-55P-201ENST00000411146 SPDYE4A6NLX3 237 aa6.54□□□□□ -1.36
RNU2-55P-201ENST00000411146 CREBZFQ9NS37 354 aa6.51□□□□□ -1.37
RNU2-55P-201ENST00000411146 FARP1Q9Y4F1 1045 aaPredicted RBP6.51□□□□□ -1.37
RNU2-55P-201ENST00000411146 CD44P16070 742 aaKnown RBP6.47□□□□□ -1.37
RNU2-55P-201ENST00000411146 POTEIP0CG38 1075 aa6.45□□□□□ -1.38
RNU2-55P-201ENST00000411146 MNX1P50219 401 aaPredicted RBP6.42□□□□□ -1.38
RNU2-55P-201ENST00000411146 LHX8Q68G74 356 aa6.42□□□□□ -1.38
RNU2-55P-201ENST00000411146 STAG3Q9UJ98 1225 aa6.41□□□□□ -1.38
RNU2-55P-201ENST00000411146 PROM2Q8N271 834 aa6.39□□□□□ -1.39
RNU2-55P-201ENST00000411146 ZNF579Q8NAF0 562 aaKnown RBP6.39□□□□□ -1.39
RNU2-55P-201ENST00000411146 ZRANB1Q9UGI0 708 aa6.39□□□□□ -1.39
RNU2-55P-201ENST00000411146 CLCN6P51797 869 aa6.38□□□□□ -1.39
RNU2-55P-201ENST00000411146 GALR2O43603 387 aaPredicted RBP6.35□□□□□ -1.39
RNU2-55P-201ENST00000411146 PHF12Q96QT6 1004 aa6.35□□□□□ -1.39
RNU2-55P-201ENST00000411146 DCBLD2Q96PD2 775 aa6.31□□□□□ -1.4
RNU2-55P-201ENST00000411146 PELP1Q8IZL8 1130 aaKnown RBP6.29□□□□□ -1.4
RNU2-55P-201ENST00000411146 TSPYL2Q9H2G4 693 aaPredicted RBP6.27□□□□□ -1.41
RNU2-55P-201ENST00000411146 POTEB2H3BUK9 544 aa6.26□□□□□ -1.41
RNU2-55P-201ENST00000411146 NPM1P06748 294 aaKnown RBP eCLIP6.26□□□□□ -1.41
RNU2-55P-201ENST00000411146 FKBP8Q14318 412 aa6.26□□□□□ -1.41
RNU2-55P-201ENST00000411146 PAK3O75914 559 aaPredicted RBP6.25□□□□□ -1.41
RNU2-55P-201ENST00000411146 MIER1Q8N108 512 aa6.25□□□□□ -1.41
RNU2-55P-201ENST00000411146 MS4A3Q96HJ5 214 aa6.24□□□□□ -1.41
RNU2-55P-201ENST00000411146 RASEFQ8IZ41 740 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 206 ms