RNA–Protein interactions for RNA: ENST00000410604.1

RNU2-39P-201, Transcript of RNA, U2 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU2-39P, Length 198 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU2-39P-201ENST00000410604 AEBP2Q6ZN18 517 aaPredicted RBP22.5■■□□□ 1.19
RNU2-39P-201ENST00000410604 CHIC1Q5VXU3 224 aa21.09■□□□□ 0.97
RNU2-39P-201ENST00000410604 SENP3Q9H4L4 574 aaPredicted RBP19.19■□□□□ 0.66
RNU2-39P-201ENST00000410604 PHF23Q9BUL5 403 aaPredicted RBP18.92■□□□□ 0.62
RNU2-39P-201ENST00000410604 FOXD1Q16676 465 aa17.94■□□□□ 0.46
RNU2-39P-201ENST00000410604 POTEDQ86YR6 584 aa16.92■□□□□ 0.3
RNU2-39P-201ENST00000410604 MSH5O43196 834 aa16.86■□□□□ 0.29
RNU2-39P-201ENST00000410604 PLPPR3Q6T4P5 718 aa16.72■□□□□ 0.27
RNU2-39P-201ENST00000410604 PIAS4Q8N2W9 510 aaPredicted RBP16.68■□□□□ 0.26
RNU2-39P-201ENST00000410604 PPP6R1Q9UPN7 881 aa16.59■□□□□ 0.25
RNU2-39P-201ENST00000410604 ADRA2BP18089 450 aa16.51■□□□□ 0.23
RNU2-39P-201ENST00000410604 MAPK8IP2Q13387 824 aaPredicted RBP15.25■□□□□ 0.03
RNU2-39P-201ENST00000410604 DMRT2Q9Y5R5 561 aa15.19■□□□□ 0.02
RNU2-39P-201ENST00000410604 SCAF1Q9H7N4 1312 aaKnown RBP15.06■□□□□ 0
RNU2-39P-201ENST00000410604 PPP4R3CPQ6ZMV5 832 aa14.63□□□□□ -0.07
RNU2-39P-201ENST00000410604 CACNB1Q02641 598 aaPredicted RBP14.62□□□□□ -0.07
RNU2-39P-201ENST00000410604 DCAF8L1A6NGE4 600 aa14.55□□□□□ -0.08
RNU2-39P-201ENST00000410604 HOXD11P31277 338 aaPredicted RBP14.54□□□□□ -0.08
RNU2-39P-201ENST00000410604 CNKSR2Q8WXI2 1034 aa14.4□□□□□ -0.1
RNU2-39P-201ENST00000410604 RNF39Q9H2S5 420 aa14.38□□□□□ -0.11
RNU2-39P-201ENST00000410604 RNF216Q9NWF9 866 aaPredicted RBP14.35□□□□□ -0.11
RNU2-39P-201ENST00000410604 C1QBPQ07021 282 aaKnown RBP14.15□□□□□ -0.14
RNU2-39P-201ENST00000410604 DNAJC5BQ9UF47 199 aa14.07□□□□□ -0.16
RNU2-39P-201ENST00000410604 NCBP3Q53F19 620 aaKnown RBP13.96□□□□□ -0.17
RNU2-39P-201ENST00000410604 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.82□□□□□ -0.2
RNU2-39P-201ENST00000410604 NPM3O75607 178 aaKnown RBP13.8□□□□□ -0.2
RNU2-39P-201ENST00000410604 U3KPZ7 1027 aaPredicted RBP13.54□□□□□ -0.24
RNU2-39P-201ENST00000410604 SPINK5Q9NQ38 1064 aaPredicted RBP13.42□□□□□ -0.26
RNU2-39P-201ENST00000410604 DSG3P32926 999 aa13.39□□□□□ -0.27
RNU2-39P-201ENST00000410604 CAPN15O75808 1086 aa13.38□□□□□ -0.27
RNU2-39P-201ENST00000410604 KCNA4P22459 653 aa13.31□□□□□ -0.28
RNU2-39P-201ENST00000410604 SLC4A2P04920 1241 aa13.26□□□□□ -0.29
RNU2-39P-201ENST00000410604 POTEHQ6S545 545 aa13.19□□□□□ -0.3
RNU2-39P-201ENST00000410604 TRHP20396 242 aaPredicted RBP13.11□□□□□ -0.31
RNU2-39P-201ENST00000410604 APLP2Q06481 763 aa13.07□□□□□ -0.32
RNU2-39P-201ENST00000410604 ABCB7O75027 752 aa13.06□□□□□ -0.32
RNU2-39P-201ENST00000410604 ZNF219Q9P2Y4 722 aaPredicted RBP13.06□□□□□ -0.32
RNU2-39P-201ENST00000410604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.01□□□□□ -0.33
RNU2-39P-201ENST00000410604 HNRNPUL2Q1KMD3 747 aaKnown RBP13.01□□□□□ -0.33
RNU2-39P-201ENST00000410604 SAMD1Q6SPF0 538 aaPredicted RBP12.94□□□□□ -0.34
RNU2-39P-201ENST00000410604 MYCNP04198 464 aaPredicted RBP12.75□□□□□ -0.37
RNU2-39P-201ENST00000410604 RBM42Q9BTD8 480 aaKnown RBP12.75□□□□□ -0.37
RNU2-39P-201ENST00000410604 POLA2Q14181 598 aa12.71□□□□□ -0.37
RNU2-39P-201ENST00000410604 CHRDL2Q6WN34 429 aa12.59□□□□□ -0.39
RNU2-39P-201ENST00000410604 ATF5Q9Y2D1 282 aaPredicted RBP12.51□□□□□ -0.41
RNU2-39P-201ENST00000410604 SLC4A1APQ9BWU0 796 aaKnown RBP12.49□□□□□ -0.41
RNU2-39P-201ENST00000410604 FOXD4L1Q9NU39 408 aa12.49□□□□□ -0.41
RNU2-39P-201ENST00000410604 AKT1S1Q96B36 256 aa12.41□□□□□ -0.42
RNU2-39P-201ENST00000410604 ZBTB12Q9Y330 459 aaPredicted RBP12.39□□□□□ -0.43
RNU2-39P-201ENST00000410604 OSCARQ8IYS5 282 aa12.32□□□□□ -0.44
RNU2-39P-201ENST00000410604 REM2Q8IYK8 340 aaPredicted RBP12.31□□□□□ -0.44
RNU2-39P-201ENST00000410604 ZBTB22O15209 634 aa12.25□□□□□ -0.45
RNU2-39P-201ENST00000410604 SP7Q8TDD2 431 aaPredicted RBP12.25□□□□□ -0.45
RNU2-39P-201ENST00000410604 PIP4P2Q8N4L2 257 aa12.24□□□□□ -0.45
RNU2-39P-201ENST00000410604 PITPNM1O00562 1244 aa12.18□□□□□ -0.46
RNU2-39P-201ENST00000410604 FXR2P51116 673 aaKnown RBP eCLIP12.13□□□□□ -0.47
RNU2-39P-201ENST00000410604 ATXN8OSP0DMR3 200 aa12.11□□□□□ -0.47
RNU2-39P-201ENST00000410604 HAX1O00165 279 aa12.07□□□□□ -0.48
RNU2-39P-201ENST00000410604 SPDYE2BA6NHP3 402 aa12.01□□□□□ -0.49
RNU2-39P-201ENST00000410604 SPDYE6P0CI01 402 aa12.01□□□□□ -0.49
RNU2-39P-201ENST00000410604 SPDYE2Q495Y8 402 aa12.01□□□□□ -0.49
RNU2-39P-201ENST00000410604 FBLN2P98095 1184 aa11.99□□□□□ -0.49
RNU2-39P-201ENST00000410604 EVX2Q03828 476 aa11.95□□□□□ -0.5
RNU2-39P-201ENST00000410604 MKRN4PQ13434 485 aaPredicted RBP11.92□□□□□ -0.5
RNU2-39P-201ENST00000410604 PRKAR2AP13861 404 aaKnown RBP11.86□□□□□ -0.51
RNU2-39P-201ENST00000410604 SPDYE1Q8NFV5 336 aaPredicted RBP11.86□□□□□ -0.51
RNU2-39P-201ENST00000410604 CLEC11AQ9Y240 323 aa11.86□□□□□ -0.51
RNU2-39P-201ENST00000410604 SSUH2Q9Y2M2 353 aa11.84□□□□□ -0.51
RNU2-39P-201ENST00000410604 ZNF692Q9BU19 519 aaPredicted RBP11.82□□□□□ -0.52
RNU2-39P-201ENST00000410604 C19orf67A6NJJ6 358 aa11.75□□□□□ -0.53
RNU2-39P-201ENST00000410604 CHADLQ6NUI6 762 aa11.68□□□□□ -0.54
RNU2-39P-201ENST00000410604 PABPN1Q86U42 306 aaKnown RBP eCLIP11.65□□□□□ -0.54
RNU2-39P-201ENST00000410604 GABBR2O75899 941 aa11.64□□□□□ -0.55
RNU2-39P-201ENST00000410604 PRR29P0C7W0 189 aa11.62□□□□□ -0.55
RNU2-39P-201ENST00000410604 LHX8Q68G74 356 aa11.49□□□□□ -0.57
RNU2-39P-201ENST00000410604 FARP1Q9Y4F1 1045 aaPredicted RBP11.48□□□□□ -0.57
RNU2-39P-201ENST00000410604 CD44P16070 742 aaKnown RBP11.46□□□□□ -0.57
RNU2-39P-201ENST00000410604 CSRNP3Q8WYN3 585 aa11.45□□□□□ -0.58
RNU2-39P-201ENST00000410604 POTEIP0CG38 1075 aa11.41□□□□□ -0.58
RNU2-39P-201ENST00000410604 CLCN6P51797 869 aa11.33□□□□□ -0.6
RNU2-39P-201ENST00000410604 CREBZFQ9NS37 354 aa11.3□□□□□ -0.6
RNU2-39P-201ENST00000410604 ZNF579Q8NAF0 562 aaKnown RBP11.28□□□□□ -0.6
RNU2-39P-201ENST00000410604 ZRANB1Q9UGI0 708 aa11.26□□□□□ -0.61
RNU2-39P-201ENST00000410604 DCBLD2Q96PD2 775 aa11.25□□□□□ -0.61
RNU2-39P-201ENST00000410604 STAG3Q9UJ98 1225 aa11.25□□□□□ -0.61
RNU2-39P-201ENST00000410604 SPDYE4A6NLX3 237 aa11.2□□□□□ -0.62
RNU2-39P-201ENST00000410604 GALR2O43603 387 aaPredicted RBP11.17□□□□□ -0.62
RNU2-39P-201ENST00000410604 EHMT2Q96KQ7 1210 aa11.13□□□□□ -0.63
RNU2-39P-201ENST00000410604 PHF12Q96QT6 1004 aa11.1□□□□□ -0.63
RNU2-39P-201ENST00000410604 PAK3O75914 559 aaPredicted RBP11.08□□□□□ -0.64
RNU2-39P-201ENST00000410604 MNX1P50219 401 aaPredicted RBP11.08□□□□□ -0.64
RNU2-39P-201ENST00000410604 POTEB2H3BUK9 544 aa11.04□□□□□ -0.64
RNU2-39P-201ENST00000410604 NPM1P06748 294 aaKnown RBP eCLIP11.04□□□□□ -0.64
RNU2-39P-201ENST00000410604 OTUD5Q96G74 571 aa11.03□□□□□ -0.64
RNU2-39P-201ENST00000410604 PELP1Q8IZL8 1130 aaKnown RBP10.99□□□□□ -0.65
RNU2-39P-201ENST00000410604 MS4A3Q96HJ5 214 aa10.94□□□□□ -0.66
RNU2-39P-201ENST00000410604 PLSCR2Q9NRY7 297 aa10.94□□□□□ -0.66
RNU2-39P-201ENST00000410604 ASTLQ6HA08 431 aaPredicted RBP10.91□□□□□ -0.66
RNU2-39P-201ENST00000410604 PROM2Q8N271 834 aa10.91□□□□□ -0.66
RNU2-39P-201ENST00000410604 ATMINO43313 823 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms