RNA–Protein interactions for RNA: ENST00000410011.5

LIMS2-208, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS2, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-208ENST00000410011 NISCHQ9Y2I1 1504 aa34.52■■■■□ 3.12
LIMS2-208ENST00000410011 CCDC180Q9P1Z9 1646 aa29.4■■■□□ 2.3
LIMS2-208ENST00000410011 ZCCHC6Q5VYS8 1495 aaKnown RBP29.25■■■□□ 2.27
LIMS2-208ENST00000410011 SHROOM4Q9ULL8 1493 aa29.09■■■□□ 2.25
LIMS2-208ENST00000410011 SUPT5HO00267 1087 aaKnown RBP28.65■■■□□ 2.18
LIMS2-208ENST00000410011 DCAF1Q9Y4B6 1507 aa28.53■■■□□ 2.16
LIMS2-208ENST00000410011 DCAF8L2P0C7V8 631 aa28.17■■■□□ 2.1
LIMS2-208ENST00000410011 CHIC1Q5VXU3 224 aa28.12■■■□□ 2.09
LIMS2-208ENST00000410011 MYO15BQ96JP2 1530 aa27.92■■■□□ 2.06
LIMS2-208ENST00000410011 ABCC9O60706 1549 aa27.58■■■□□ 2.01
LIMS2-208ENST00000410011 HRCP23327 699 aa27.45■■□□□ 1.98
LIMS2-208ENST00000410011 RSF1Q96T23 1441 aaPredicted RBP27.32■■□□□ 1.96
LIMS2-208ENST00000410011 SCRIBQ14160 1630 aa27.28■■□□□ 1.96
LIMS2-208ENST00000410011 PCGF6Q9BYE7 350 aa27.19■■□□□ 1.94
LIMS2-208ENST00000410011 NACADO15069 1562 aa27.15■■□□□ 1.94
LIMS2-208ENST00000410011 LOC105371045A0A1W2PR82 267 aa27.11■■□□□ 1.93
LIMS2-208ENST00000410011 RB1CC1Q8TDY2 1594 aa27.09■■□□□ 1.93
LIMS2-208ENST00000410011 TRIM26Q12899 539 aaPredicted RBP26.87■■□□□ 1.89
LIMS2-208ENST00000410011 TRIM41Q8WV44 630 aa26.83■■□□□ 1.89
LIMS2-208ENST00000410011 CECR2Q9BXF3 1484 aa26.77■■□□□ 1.88
LIMS2-208ENST00000410011 MROH2BQ7Z745 1585 aa26.74■■□□□ 1.87
LIMS2-208ENST00000410011 PPARGC1BQ86YN6 1023 aaKnown RBP26.58■■□□□ 1.85
LIMS2-208ENST00000410011 WIZO95785 1651 aa26.56■■□□□ 1.84
LIMS2-208ENST00000410011 BAZ1AQ9NRL2 1556 aaPredicted RBP26.55■■□□□ 1.84
LIMS2-208ENST00000410011 ZEB1P37275 1124 aaPredicted RBP26.45■■□□□ 1.82
LIMS2-208ENST00000410011 EIF4G1Q04637 1599 aaKnown RBP26.41■■□□□ 1.82
LIMS2-208ENST00000410011 FAM9AQ8IZU1 332 aaPredicted RBP26.38■■□□□ 1.81
LIMS2-208ENST00000410011 TOP2AP11388 1531 aaKnown RBP26.29■■□□□ 1.8
LIMS2-208ENST00000410011 SMARCA4P51532 1647 aa26.23■■□□□ 1.79
LIMS2-208ENST00000410011 UNC13AQ9UPW8 1703 aa26.12■■□□□ 1.77
LIMS2-208ENST00000410011 CCDC88BA6NC98 1476 aa26.11■■□□□ 1.77
LIMS2-208ENST00000410011 SMARCA2P51531 1590 aa26.1■■□□□ 1.77
LIMS2-208ENST00000410011 EHMT2Q96KQ7 1210 aa25.96■■□□□ 1.75
LIMS2-208ENST00000410011 WRNQ14191 1432 aaPredicted RBP eCLIP25.94■■□□□ 1.74
LIMS2-208ENST00000410011 ABCC8Q09428 1581 aa25.94■■□□□ 1.74
LIMS2-208ENST00000410011 EEA1Q15075 1411 aa25.93■■□□□ 1.74
LIMS2-208ENST00000410011 PEG3Q9GZU2 1588 aa25.89■■□□□ 1.73
LIMS2-208ENST00000410011 BICRAQ9NZM4 1560 aa25.84■■□□□ 1.73
LIMS2-208ENST00000410011 TNIKQ9UKE5 1360 aa25.84■■□□□ 1.73
LIMS2-208ENST00000410011 SOGA1O94964 1423 aa25.76■■□□□ 1.72
LIMS2-208ENST00000410011 CEP162Q5TB80 1403 aa25.76■■□□□ 1.71
LIMS2-208ENST00000410011 CSRNP3Q8WYN3 585 aa25.72■■□□□ 1.71
LIMS2-208ENST00000410011 GOLGA3Q08378 1498 aa25.62■■□□□ 1.69
LIMS2-208ENST00000410011 RUSC2Q8N2Y8 1516 aa25.59■■□□□ 1.69
LIMS2-208ENST00000410011 PABPN1Q86U42 306 aaKnown RBP eCLIP25.58■■□□□ 1.69
LIMS2-208ENST00000410011 CCER1Q8TC90 406 aaPredicted RBP25.57■■□□□ 1.68
LIMS2-208ENST00000410011 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.55■■□□□ 1.68
LIMS2-208ENST00000410011 ATAD2BQ9ULI0 1458 aa25.54■■□□□ 1.68
LIMS2-208ENST00000410011 KIF21BO75037 1637 aa25.49■■□□□ 1.67
LIMS2-208ENST00000410011 UBTFP17480 764 aaKnown RBP25.49■■□□□ 1.67
LIMS2-208ENST00000410011 CEP164Q9UPV0 1460 aa25.49■■□□□ 1.67
LIMS2-208ENST00000410011 SYNJ1O43426 1573 aa25.46■■□□□ 1.67
LIMS2-208ENST00000410011 BAZ1BQ9UIG0 1483 aaKnown RBP25.44■■□□□ 1.66
LIMS2-208ENST00000410011 CLIP1P30622 1438 aa25.27■■□□□ 1.64
LIMS2-208ENST00000410011 TOP2BQ02880 1626 aa25.25■■□□□ 1.63
LIMS2-208ENST00000410011 VPS8Q8N3P4 1428 aa25.24■■□□□ 1.63
LIMS2-208ENST00000410011 SCAF1Q9H7N4 1312 aaKnown RBP25.23■■□□□ 1.63
LIMS2-208ENST00000410011 TTBK1Q5TCY1 1321 aaPredicted RBP25.19■■□□□ 1.62
LIMS2-208ENST00000410011 BIVM-ERCC5R4GMW8 1640 aa25.18■■□□□ 1.62
LIMS2-208ENST00000410011 DIEXFQ68CQ4 756 aaKnown RBP25.17■■□□□ 1.62
LIMS2-208ENST00000410011 RAPGEF2Q9Y4G8 1499 aa25.17■■□□□ 1.62
LIMS2-208ENST00000410011 HMGXB3Q12766 1538 aa25.13■■□□□ 1.61
LIMS2-208ENST00000410011 PELP1Q8IZL8 1130 aaKnown RBP25.12■■□□□ 1.61
LIMS2-208ENST00000410011 NCAPD3P42695 1498 aa25.11■■□□□ 1.61
LIMS2-208ENST00000410011 ERICH3Q5RHP9 1530 aa25.1■■□□□ 1.61
LIMS2-208ENST00000410011 ACIN1Q9UKV3 1341 aaKnown RBP25.08■■□□□ 1.6
LIMS2-208ENST00000410011 PRXQ9BXM0 1461 aa25.05■■□□□ 1.6
LIMS2-208ENST00000410011 ZNF316A6NFI3 1004 aaPredicted RBP25.03■■□□□ 1.6
LIMS2-208ENST00000410011 APLP2Q06481 763 aa25.02■■□□□ 1.6
LIMS2-208ENST00000410011 CENPBP07199 599 aaPredicted RBP24.96■■□□□ 1.59
LIMS2-208ENST00000410011 NEUROD1Q13562 356 aa24.93■■□□□ 1.58
LIMS2-208ENST00000410011 CFTRP13569 1480 aa24.91■■□□□ 1.58
LIMS2-208ENST00000410011 HNRNPUL2Q1KMD3 747 aaKnown RBP24.91■■□□□ 1.58
LIMS2-208ENST00000410011 CUX1P39880 1505 aa24.91■■□□□ 1.58
LIMS2-208ENST00000410011 KIF27Q86VH2 1401 aa24.88■■□□□ 1.57
LIMS2-208ENST00000410011 CLSPNQ9HAW4 1339 aa24.86■■□□□ 1.57
LIMS2-208ENST00000410011 ARAP1Q96P48 1450 aa24.86■■□□□ 1.57
LIMS2-208ENST00000410011 PRDM2Q13029 1718 aa24.73■■□□□ 1.55
LIMS2-208ENST00000410011 RRBP1Q9P2E9 1410 aaKnown RBP24.72■■□□□ 1.55
LIMS2-208ENST00000410011 RANGAP1P46060 587 aaPredicted RBP24.68■■□□□ 1.54
LIMS2-208ENST00000410011 GTF3C3Q9Y5Q9 886 aa24.68■■□□□ 1.54
LIMS2-208ENST00000410011 CUX2O14529 1486 aa24.65■■□□□ 1.54
LIMS2-208ENST00000410011 DHX57Q6P158 1386 aaKnown RBP24.65■■□□□ 1.54
LIMS2-208ENST00000410011 ARHGAP35Q9NRY4 1499 aa24.64■■□□□ 1.54
LIMS2-208ENST00000410011 KANK4Q5T7N3 995 aaPredicted RBP24.64■■□□□ 1.53
LIMS2-208ENST00000410011 MAP3K1Q13233 1512 aa24.59■■□□□ 1.53
LIMS2-208ENST00000410011 IGF1RP08069 1367 aa24.58■■□□□ 1.53
LIMS2-208ENST00000410011 CADPSQ9ULU8 1353 aa24.57■■□□□ 1.52
LIMS2-208ENST00000410011 MIER1Q8N108 512 aa24.57■■□□□ 1.52
LIMS2-208ENST00000410011 CCNB3Q8WWL7 1395 aa24.53■■□□□ 1.52
LIMS2-208ENST00000410011 CARMIL1Q5VZK9 1371 aa24.45■■□□□ 1.51
LIMS2-208ENST00000410011 FGD5Q6ZNL6 1462 aa24.43■■□□□ 1.5
LIMS2-208ENST00000410011 TIAM1Q13009 1591 aa24.42■■□□□ 1.5
LIMS2-208ENST00000410011 FHAD1B1AJZ9 1412 aa24.35■■□□□ 1.49
LIMS2-208ENST00000410011 YTHDC1Q96MU7 727 aaKnown RBP24.34■■□□□ 1.49
LIMS2-208ENST00000410011 LRRC9Q6ZRR7 1453 aa24.33■■□□□ 1.49
LIMS2-208ENST00000410011 FANCD2Q9BXW9 1451 aa24.28■■□□□ 1.48
LIMS2-208ENST00000410011 RAB3GAP2Q9H2M9 1393 aa24.26■■□□□ 1.47
LIMS2-208ENST00000410011 ABCA10Q8WWZ4 1543 aa24.25■■□□□ 1.47
LIMS2-208ENST00000410011 DNMBPQ6XZF7 1577 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms