RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 AEBP2Q6ZN18 517 aaPredicted RBP20.1■□□□□ 0.81
CLK1-202ENST00000409403 CHIC1Q5VXU3 224 aa19.46■□□□□ 0.71
CLK1-202ENST00000409403 PHF23Q9BUL5 403 aaPredicted RBP17.13■□□□□ 0.33
CLK1-202ENST00000409403 SENP3Q9H4L4 574 aaPredicted RBP17.11■□□□□ 0.33
CLK1-202ENST00000409403 PLPPR3Q6T4P5 718 aa15.99■□□□□ 0.15
CLK1-202ENST00000409403 FOXD1Q16676 465 aa15.93■□□□□ 0.14
CLK1-202ENST00000409403 POTEDQ86YR6 584 aa15.89■□□□□ 0.13
CLK1-202ENST00000409403 ADRA2BP18089 450 aa15□□□□□ -0.01
CLK1-202ENST00000409403 PPP6R1Q9UPN7 881 aa15□□□□□ -0.01
CLK1-202ENST00000409403 PIAS4Q8N2W9 510 aaPredicted RBP14.93□□□□□ -0.02
CLK1-202ENST00000409403 MSH5O43196 834 aa14.86□□□□□ -0.03
CLK1-202ENST00000409403 KCNA4P22459 653 aa14.25□□□□□ -0.13
CLK1-202ENST00000409403 PPP4R3CPQ6ZMV5 832 aa14.13□□□□□ -0.15
CLK1-202ENST00000409403 NCBP3Q53F19 620 aaKnown RBP13.89□□□□□ -0.19
CLK1-202ENST00000409403 SCAF1Q9H7N4 1312 aaKnown RBP13.76□□□□□ -0.21
CLK1-202ENST00000409403 EHMT2Q96KQ7 1210 aa13.71□□□□□ -0.21
CLK1-202ENST00000409403 MAPK8IP2Q13387 824 aaPredicted RBP13.7□□□□□ -0.22
CLK1-202ENST00000409403 NPM3O75607 178 aaKnown RBP13.66□□□□□ -0.22
CLK1-202ENST00000409403 CNKSR2Q8WXI2 1034 aa13.66□□□□□ -0.22
CLK1-202ENST00000409403 SLC4A1APQ9BWU0 796 aaKnown RBP13.65□□□□□ -0.22
CLK1-202ENST00000409403 DMRT2Q9Y5R5 561 aa13.59□□□□□ -0.23
CLK1-202ENST00000409403 CSRNP3Q8WYN3 585 aa13.37□□□□□ -0.27
CLK1-202ENST00000409403 RNF216Q9NWF9 866 aaPredicted RBP13.29□□□□□ -0.28
CLK1-202ENST00000409403 DNAJC5BQ9UF47 199 aa13.24□□□□□ -0.29
CLK1-202ENST00000409403 HOXD11P31277 338 aaPredicted RBP13.14□□□□□ -0.31
CLK1-202ENST00000409403 ZBTB22O15209 634 aa13.11□□□□□ -0.31
CLK1-202ENST00000409403 DCAF8L1A6NGE4 600 aa13.03□□□□□ -0.32
CLK1-202ENST00000409403 FOXD4L1Q9NU39 408 aa13.02□□□□□ -0.33
CLK1-202ENST00000409403 CACNB1Q02641 598 aaPredicted RBP12.81□□□□□ -0.36
CLK1-202ENST00000409403 SLC4A2P04920 1241 aa12.8□□□□□ -0.36
CLK1-202ENST00000409403 RNF39Q9H2S5 420 aa12.7□□□□□ -0.38
CLK1-202ENST00000409403 MYCNP04198 464 aaPredicted RBP12.64□□□□□ -0.39
CLK1-202ENST00000409403 ATXN8OSP0DMR3 200 aa12.53□□□□□ -0.4
CLK1-202ENST00000409403 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.52□□□□□ -0.42e-8■■□□□ 12.7
CLK1-202ENST00000409403 C1QBPQ07021 282 aaKnown RBP12.51□□□□□ -0.41
CLK1-202ENST00000409403 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.36□□□□□ -0.43
CLK1-202ENST00000409403 HNRNPUL2Q1KMD3 747 aaKnown RBP12.36□□□□□ -0.43
CLK1-202ENST00000409403 U3KPZ7 1027 aaPredicted RBP12.35□□□□□ -0.43
CLK1-202ENST00000409403 SAMD1Q6SPF0 538 aaPredicted RBP12.32□□□□□ -0.44
CLK1-202ENST00000409403 ATF5Q9Y2D1 282 aaPredicted RBP12.24□□□□□ -0.45
CLK1-202ENST00000409403 POTEHQ6S545 545 aa12.19□□□□□ -0.46
CLK1-202ENST00000409403 APLP2Q06481 763 aa12.13□□□□□ -0.47
CLK1-202ENST00000409403 FKBP8Q14318 412 aa12.07□□□□□ -0.48
CLK1-202ENST00000409403 SPINK5Q9NQ38 1064 aaPredicted RBP12.06□□□□□ -0.48
CLK1-202ENST00000409403 CAPN15O75808 1086 aa12.03□□□□□ -0.48
CLK1-202ENST00000409403 ZNF219Q9P2Y4 722 aaPredicted RBP12.02□□□□□ -0.49
CLK1-202ENST00000409403 DSG3P32926 999 aa11.93□□□□□ -0.5
CLK1-202ENST00000409403 TRHP20396 242 aaPredicted RBP11.87□□□□□ -0.51
CLK1-202ENST00000409403 ABCB7O75027 752 aa11.78□□□□□ -0.52
CLK1-202ENST00000409403 POLA2Q14181 598 aa11.76□□□□□ -0.53
CLK1-202ENST00000409403 MKRN4PQ13434 485 aaPredicted RBP11.74□□□□□ -0.53
CLK1-202ENST00000409403 FBLN2P98095 1184 aa11.73□□□□□ -0.53
CLK1-202ENST00000409403 AMER1Q5JTC6 1135 aaPredicted RBP11.71□□□□□ -0.54
CLK1-202ENST00000409403 SPDYE4A6NLX3 237 aa11.68□□□□□ -0.54
CLK1-202ENST00000409403 RTN4Q9NQC3 1192 aaKnown RBP11.68□□□□□ -0.54
CLK1-202ENST00000409403 ZBTB12Q9Y330 459 aaPredicted RBP11.62□□□□□ -0.55
CLK1-202ENST00000409403 FBXO3Q9UK99 471 aa11.55□□□□□ -0.56
CLK1-202ENST00000409403 PROM2Q8N271 834 aa11.54□□□□□ -0.56
CLK1-202ENST00000409403 ABCC9O60706 1549 aa11.41□□□□□ -0.58
CLK1-202ENST00000409403 VASPP50552 380 aaPredicted RBP11.37□□□□□ -0.59
CLK1-202ENST00000409403 RBM42Q9BTD8 480 aaKnown RBP11.37□□□□□ -0.59
CLK1-202ENST00000409403 OSCARQ8IYS5 282 aa11.34□□□□□ -0.59
CLK1-202ENST00000409403 ZNF692Q9BU19 519 aaPredicted RBP11.34□□□□□ -0.59
CLK1-202ENST00000409403 SPDYE2BA6NHP3 402 aa11.33□□□□□ -0.6
CLK1-202ENST00000409403 SPDYE6P0CI01 402 aa11.33□□□□□ -0.6
CLK1-202ENST00000409403 SPDYE2Q495Y8 402 aa11.33□□□□□ -0.6
CLK1-202ENST00000409403 SSUH2Q9Y2M2 353 aa11.27□□□□□ -0.6
CLK1-202ENST00000409403 IFNLR1Q8IU57 520 aaPredicted RBP11.24□□□□□ -0.61
CLK1-202ENST00000409403 SLC24A1O60721 1099 aa11.21□□□□□ -0.61
CLK1-202ENST00000409403 DNAJC5Q9H3Z4 198 aa11.2□□□□□ -0.62
CLK1-202ENST00000409403 PABPN1Q86U42 306 aaKnown RBP eCLIP11.2□□□□□ -0.62
CLK1-202ENST00000409403 STAG3Q9UJ98 1225 aa11.18□□□□□ -0.62
CLK1-202ENST00000409403 AKT1S1Q96B36 256 aa11.14□□□□□ -0.63
CLK1-202ENST00000409403 NISCHQ9Y2I1 1504 aa11.11□□□□□ -0.63
CLK1-202ENST00000409403 CHRDL2Q6WN34 429 aa11.08□□□□□ -0.64
CLK1-202ENST00000409403 KLHL34Q8N239 644 aa11.08□□□□□ -0.64
CLK1-202ENST00000409403 PLCD3Q8N3E9 789 aa11.07□□□□□ -0.64
CLK1-202ENST00000409403 REM2Q8IYK8 340 aaPredicted RBP11.04□□□□□ -0.64
CLK1-202ENST00000409403 SPOCK2Q92563 424 aa11.04□□□□□ -0.64
CLK1-202ENST00000409403 MIER1Q8N108 512 aa11.03□□□□□ -0.64
CLK1-202ENST00000409403 PKD2Q13563 968 aa11.01□□□□□ -0.65
CLK1-202ENST00000409403 PLEKHG5O94827 1062 aa10.97□□□□□ -0.65
CLK1-202ENST00000409403 DCAF8L2P0C7V8 631 aa10.94□□□□□ -0.66
CLK1-202ENST00000409403 ZBTB47Q9UFB7 747 aaPredicted RBP10.94□□□□□ -0.66
CLK1-202ENST00000409403 PITPNM1O00562 1244 aa10.93□□□□□ -0.66
CLK1-202ENST00000409403 SPDYE1Q8NFV5 336 aaPredicted RBP10.9□□□□□ -0.66
CLK1-202ENST00000409403 ECM2O94769 699 aaPredicted RBP10.88□□□□□ -0.67
CLK1-202ENST00000409403 PIP4P2Q8N4L2 257 aa10.85□□□□□ -0.67
CLK1-202ENST00000409403 SP7Q8TDD2 431 aaPredicted RBP10.84□□□□□ -0.67
CLK1-202ENST00000409403 CLEC11AQ9Y240 323 aa10.82□□□□□ -0.68
CLK1-202ENST00000409403 PLCB2Q00722 1185 aa10.82□□□□□ -0.68
CLK1-202ENST00000409403 FXR2P51116 673 aaKnown RBP eCLIP10.8□□□□□ -0.68
CLK1-202ENST00000409403 CIZ1Q9ULV3 898 aaPredicted RBP10.8□□□□□ -0.68
CLK1-202ENST00000409403 PRR29P0C7W0 189 aa10.79□□□□□ -0.68
CLK1-202ENST00000409403 RGL2O15211 777 aa10.76□□□□□ -0.69
CLK1-202ENST00000409403 TRIM41Q8WV44 630 aa10.73□□□□□ -0.69
CLK1-202ENST00000409403 CREBZFQ9NS37 354 aa10.73□□□□□ -0.69
CLK1-202ENST00000409403 GSE1Q14687 1217 aa10.71□□□□□ -0.69
CLK1-202ENST00000409403 NUBP1P53384 320 aa10.7□□□□□ -0.7
CLK1-202ENST00000409403 BBXQ8WY36 941 aaPredicted RBP10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms