RNA–Protein interactions for RNA: ENST00000400555.7

PPP4R1-202, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PPP4R1, Length 3,885 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-202ENST00000400555 NISCHQ9Y2I1 1504 aa24.82■■□□□ 1.56
PPP4R1-202ENST00000400555 SHROOM4Q9ULL8 1493 aa22.43■■□□□ 1.18
PPP4R1-202ENST00000400555 SUPT5HO00267 1087 aaKnown RBP22.18■■□□□ 1.14
PPP4R1-202ENST00000400555 DCAF8L2P0C7V8 631 aa22.18■■□□□ 1.14
PPP4R1-202ENST00000400555 CHIC1Q5VXU3 224 aa21.03■□□□□ 0.96
PPP4R1-202ENST00000400555 PCGF6Q9BYE7 350 aa21■□□□□ 0.95
PPP4R1-202ENST00000400555 EHMT2Q96KQ7 1210 aa20.9■□□□□ 0.94
PPP4R1-202ENST00000400555 ZCCHC6Q5VYS8 1495 aaKnown RBP20.86■□□□□ 0.93
PPP4R1-202ENST00000400555 LOC105371045A0A1W2PR82 267 aa20.82■□□□□ 0.92
PPP4R1-202ENST00000400555 MYO15BQ96JP2 1530 aa20.72■□□□□ 0.91
PPP4R1-202ENST00000400555 FAM9AQ8IZU1 332 aaPredicted RBP20.69■□□□□ 0.9
PPP4R1-202ENST00000400555 PPARGC1BQ86YN6 1023 aaKnown RBP20.61■□□□□ 0.89
PPP4R1-202ENST00000400555 HRCP23327 699 aa20.59■□□□□ 0.89
PPP4R1-202ENST00000400555 CCDC180Q9P1Z9 1646 aa20.5■□□□□ 0.87
PPP4R1-202ENST00000400555 TRIM41Q8WV44 630 aa20.38■□□□□ 0.85
PPP4R1-202ENST00000400555 TTBK1Q5TCY1 1321 aaPredicted RBP20.17■□□□□ 0.82
PPP4R1-202ENST00000400555 TRIM26Q12899 539 aaPredicted RBP20.14■□□□□ 0.81
PPP4R1-202ENST00000400555 ABCC9O60706 1549 aa20.07■□□□□ 0.8
PPP4R1-202ENST00000400555 SCRIBQ14160 1630 aa20.06■□□□□ 0.8
PPP4R1-202ENST00000400555 RSF1Q96T23 1441 aaPredicted RBP19.9■□□□□ 0.78
PPP4R1-202ENST00000400555 DCAF1Q9Y4B6 1507 aa19.86■□□□□ 0.77
PPP4R1-202ENST00000400555 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.71■□□□□ 0.75
PPP4R1-202ENST00000400555 CECR2Q9BXF3 1484 aa19.7■□□□□ 0.74
PPP4R1-202ENST00000400555 CCER1Q8TC90 406 aaPredicted RBP19.69■□□□□ 0.74
PPP4R1-202ENST00000400555 RANGAP1P46060 587 aaPredicted RBP19.68■□□□□ 0.74
PPP4R1-202ENST00000400555 RB1CC1Q8TDY2 1594 aa19.65■□□□□ 0.74
PPP4R1-202ENST00000400555 ZEB1P37275 1124 aaPredicted RBP19.65■□□□□ 0.74
PPP4R1-202ENST00000400555 PABPN1Q86U42 306 aaKnown RBP eCLIP19.61■□□□□ 0.73
PPP4R1-202ENST00000400555 UBTFP17480 764 aaKnown RBP19.6■□□□□ 0.73
PPP4R1-202ENST00000400555 MROH2BQ7Z745 1585 aa19.48■□□□□ 0.71
PPP4R1-202ENST00000400555 WIZO95785 1651 aa19.33■□□□□ 0.69
PPP4R1-202ENST00000400555 HNRNPUL2Q1KMD3 747 aaKnown RBP19.31■□□□□ 0.68
PPP4R1-202ENST00000400555 NACADO15069 1562 aa19.25■□□□□ 0.67
PPP4R1-202ENST00000400555 YTHDC1Q96MU7 727 aaKnown RBP19.24■□□□□ 0.67
PPP4R1-202ENST00000400555 APLP2Q06481 763 aa19.21■□□□□ 0.67
PPP4R1-202ENST00000400555 CSRNP3Q8WYN3 585 aa19.2■□□□□ 0.66
PPP4R1-202ENST00000400555 ABCC8Q09428 1581 aa19.19■□□□□ 0.66
PPP4R1-202ENST00000400555 SCAF1Q9H7N4 1312 aaKnown RBP19.18■□□□□ 0.66
PPP4R1-202ENST00000400555 DIEXFQ68CQ4 756 aaKnown RBP19.18■□□□□ 0.66
PPP4R1-202ENST00000400555 SOGA1O94964 1423 aa19.14■□□□□ 0.65
PPP4R1-202ENST00000400555 CCDC88BA6NC98 1476 aa19.14■□□□□ 0.65
PPP4R1-202ENST00000400555 CEP162Q5TB80 1403 aa19.04■□□□□ 0.64
PPP4R1-202ENST00000400555 BAZ1AQ9NRL2 1556 aaPredicted RBP19.03■□□□□ 0.64
PPP4R1-202ENST00000400555 NEUROD1Q13562 356 aa19.02■□□□□ 0.64
PPP4R1-202ENST00000400555 RUSC2Q8N2Y8 1516 aa19.01■□□□□ 0.63
PPP4R1-202ENST00000400555 CENPBP07199 599 aaPredicted RBP18.99■□□□□ 0.63
PPP4R1-202ENST00000400555 ITGAEP38570 1179 aa18.97■□□□□ 0.63
PPP4R1-202ENST00000400555 GTF3C3Q9Y5Q9 886 aa18.97■□□□□ 0.63
PPP4R1-202ENST00000400555 ACIN1Q9UKV3 1341 aaKnown RBP18.93■□□□□ 0.62
PPP4R1-202ENST00000400555 ATP1B4Q9UN42 357 aaPredicted RBP18.86■□□□□ 0.61
PPP4R1-202ENST00000400555 ZNF316A6NFI3 1004 aaPredicted RBP18.85■□□□□ 0.61
PPP4R1-202ENST00000400555 TNIKQ9UKE5 1360 aa18.85■□□□□ 0.61
PPP4R1-202ENST00000400555 WRNQ14191 1432 aaPredicted RBP eCLIP18.83■□□□□ 0.6
PPP4R1-202ENST00000400555 TOP2AP11388 1531 aaKnown RBP18.82■□□□□ 0.6
PPP4R1-202ENST00000400555 SMARCA4P51532 1647 aa18.79■□□□□ 0.6
PPP4R1-202ENST00000400555 SMARCA2P51531 1590 aa18.77■□□□□ 0.59
PPP4R1-202ENST00000400555 CLIP1P30622 1438 aa18.74■□□□□ 0.59
PPP4R1-202ENST00000400555 MIER1Q8N108 512 aa18.74■□□□□ 0.59
PPP4R1-202ENST00000400555 GOLGA3Q08378 1498 aa18.73■□□□□ 0.59
PPP4R1-202ENST00000400555 PELP1Q8IZL8 1130 aaKnown RBP18.69■□□□□ 0.58
PPP4R1-202ENST00000400555 EEA1Q15075 1411 aa18.64■□□□□ 0.57
PPP4R1-202ENST00000400555 P3H3Q8IVL6 736 aa18.63■□□□□ 0.57
PPP4R1-202ENST00000400555 BAZ1BQ9UIG0 1483 aaKnown RBP18.61■□□□□ 0.57
PPP4R1-202ENST00000400555 CEP164Q9UPV0 1460 aa18.57■□□□□ 0.56
PPP4R1-202ENST00000400555 KANK4Q5T7N3 995 aaPredicted RBP18.56■□□□□ 0.56
PPP4R1-202ENST00000400555 RAPGEF2Q9Y4G8 1499 aa18.56■□□□□ 0.56
PPP4R1-202ENST00000400555 EIF4G1Q04637 1599 aaKnown RBP18.54■□□□□ 0.56
PPP4R1-202ENST00000400555 FAM50AQ14320 339 aaKnown RBP18.5■□□□□ 0.55
PPP4R1-202ENST00000400555 ATAD2BQ9ULI0 1458 aa18.49■□□□□ 0.55
PPP4R1-202ENST00000400555 SYNJ1O43426 1573 aa18.47■□□□□ 0.55
PPP4R1-202ENST00000400555 VPS8Q8N3P4 1428 aa18.46■□□□□ 0.55
PPP4R1-202ENST00000400555 UNC13AQ9UPW8 1703 aa18.44■□□□□ 0.54
PPP4R1-202ENST00000400555 BICRAQ9NZM4 1560 aa18.4■□□□□ 0.54
PPP4R1-202ENST00000400555 HIRIP3Q9BW71 556 aaPredicted RBP18.39■□□□□ 0.53
PPP4R1-202ENST00000400555 BCANQ96GW7 911 aa18.3■□□□□ 0.52
PPP4R1-202ENST00000400555 SIN3AQ96ST3 1273 aa18.27■□□□□ 0.51
PPP4R1-202ENST00000400555 KIF21BO75037 1637 aa18.26■□□□□ 0.51
PPP4R1-202ENST00000400555 KIF27Q86VH2 1401 aa18.26■□□□□ 0.51
PPP4R1-202ENST00000400555 ARID3CA6NKF2 412 aa18.25■□□□□ 0.51
PPP4R1-202ENST00000400555 DDX10Q13206 875 aaKnown RBP18.25■□□□□ 0.51
PPP4R1-202ENST00000400555 KCNH8Q96L42 1107 aa18.21■□□□□ 0.51
PPP4R1-202ENST00000400555 DHX57Q6P158 1386 aaKnown RBP18.21■□□□□ 0.51
PPP4R1-202ENST00000400555 CUX2O14529 1486 aa18.17■□□□□ 0.5
PPP4R1-202ENST00000400555 CCNB3Q8WWL7 1395 aa18.17■□□□□ 0.5
PPP4R1-202ENST00000400555 ARAP1Q96P48 1450 aa18.16■□□□□ 0.5
PPP4R1-202ENST00000400555 CNGB1Q14028 1251 aaPredicted RBP18.15■□□□□ 0.5
PPP4R1-202ENST00000400555 CARMIL1Q5VZK9 1371 aa18.1■□□□□ 0.49
PPP4R1-202ENST00000400555 RAB3GAP2Q9H2M9 1393 aa18.08■□□□□ 0.48
PPP4R1-202ENST00000400555 TRIM52Q96A61 297 aa18.08■□□□□ 0.48
PPP4R1-202ENST00000400555 PRXQ9BXM0 1461 aa18.05■□□□□ 0.48
PPP4R1-202ENST00000400555 CUX1P39880 1505 aa18.05■□□□□ 0.48
PPP4R1-202ENST00000400555 CHIC2Q9UKJ5 165 aa18.05■□□□□ 0.48
PPP4R1-202ENST00000400555 TOP2BQ02880 1626 aa18.05■□□□□ 0.48
PPP4R1-202ENST00000400555 PEG3Q9GZU2 1588 aa18.04■□□□□ 0.48
PPP4R1-202ENST00000400555 IGF1RP08069 1367 aa18.03■□□□□ 0.48
PPP4R1-202ENST00000400555 SUPT16HQ9Y5B9 1047 aaKnown RBP18.02■□□□□ 0.48
PPP4R1-202ENST00000400555 CLSPNQ9HAW4 1339 aa18■□□□□ 0.47
PPP4R1-202ENST00000400555 ARHGAP35Q9NRY4 1499 aa18■□□□□ 0.47
PPP4R1-202ENST00000400555 FKBP8Q14318 412 aa17.99■□□□□ 0.47
PPP4R1-202ENST00000400555 NEFLP07196 543 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms