RNA–Protein interactions for RNA: ENST00000399448.5

PTPN6-202, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPN6, Length 2,159 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-202ENST00000399448 NISCHQ9Y2I1 1504 aa29.01■■■□□ 2.24
PTPN6-202ENST00000399448 CCDC180Q9P1Z9 1646 aa24.83■■□□□ 1.57
PTPN6-202ENST00000399448 ZCCHC6Q5VYS8 1495 aaKnown RBP24.5■■□□□ 1.51
PTPN6-202ENST00000399448 SHROOM4Q9ULL8 1493 aa24.36■■□□□ 1.49
PTPN6-202ENST00000399448 DCAF8L2P0C7V8 631 aa23.92■■□□□ 1.42
PTPN6-202ENST00000399448 DCAF1Q9Y4B6 1507 aa23.92■■□□□ 1.42
PTPN6-202ENST00000399448 SUPT5HO00267 1087 aaKnown RBP23.85■■□□□ 1.41
PTPN6-202ENST00000399448 MYO15BQ96JP2 1530 aa23.32■■□□□ 1.32
PTPN6-202ENST00000399448 CHIC1Q5VXU3 224 aa23.19■■□□□ 1.3
PTPN6-202ENST00000399448 SCRIBQ14160 1630 aa23.07■■□□□ 1.28
PTPN6-202ENST00000399448 ABCC9O60706 1549 aa23.06■■□□□ 1.28
PTPN6-202ENST00000399448 NACADO15069 1562 aa23■■□□□ 1.27
PTPN6-202ENST00000399448 RSF1Q96T23 1441 aaPredicted RBP22.85■■□□□ 1.25
PTPN6-202ENST00000399448 RB1CC1Q8TDY2 1594 aa22.63■■□□□ 1.21
PTPN6-202ENST00000399448 CECR2Q9BXF3 1484 aa22.55■■□□□ 1.2
PTPN6-202ENST00000399448 MROH2BQ7Z745 1585 aa22.48■■□□□ 1.19
PTPN6-202ENST00000399448 LOC105371045A0A1W2PR82 267 aa22.4■■□□□ 1.18
PTPN6-202ENST00000399448 WIZO95785 1651 aa22.33■■□□□ 1.17
PTPN6-202ENST00000399448 TRIM41Q8WV44 630 aa22.32■■□□□ 1.16
PTPN6-202ENST00000399448 BAZ1AQ9NRL2 1556 aaPredicted RBP22.31■■□□□ 1.16
PTPN6-202ENST00000399448 UNC13AQ9UPW8 1703 aa22.21■■□□□ 1.15
PTPN6-202ENST00000399448 PCGF6Q9BYE7 350 aa22.19■■□□□ 1.14
PTPN6-202ENST00000399448 HRCP23327 699 aa22.14■■□□□ 1.13
PTPN6-202ENST00000399448 SMARCA4P51532 1647 aa22.12■■□□□ 1.13
PTPN6-202ENST00000399448 TOP2AP11388 1531 aaKnown RBP22.06■■□□□ 1.12
PTPN6-202ENST00000399448 EIF4G1Q04637 1599 aaKnown RBP22■■□□□ 1.11
PTPN6-202ENST00000399448 FAM9AQ8IZU1 332 aaPredicted RBP22■■□□□ 1.11
PTPN6-202ENST00000399448 BICRAQ9NZM4 1560 aa21.97■■□□□ 1.11
PTPN6-202ENST00000399448 TRIM26Q12899 539 aaPredicted RBP21.94■■□□□ 1.1
PTPN6-202ENST00000399448 CCDC88BA6NC98 1476 aa21.93■■□□□ 1.1
PTPN6-202ENST00000399448 SMARCA2P51531 1590 aa21.91■■□□□ 1.1
PTPN6-202ENST00000399448 PABPN1Q86U42 306 aaKnown RBP eCLIP21.9■■□□□ 1.1
PTPN6-202ENST00000399448 PEG3Q9GZU2 1588 aa21.78■■□□□ 1.08
PTPN6-202ENST00000399448 ABCC8Q09428 1581 aa21.72■■□□□ 1.07
PTPN6-202ENST00000399448 EHMT2Q96KQ7 1210 aa21.71■■□□□ 1.07
PTPN6-202ENST00000399448 ATAD2BQ9ULI0 1458 aa21.6■■□□□ 1.05
PTPN6-202ENST00000399448 PPARGC1BQ86YN6 1023 aaKnown RBP21.55■■□□□ 1.04
PTPN6-202ENST00000399448 EEA1Q15075 1411 aa21.53■■□□□ 1.04
PTPN6-202ENST00000399448 BAZ1BQ9UIG0 1483 aaKnown RBP21.52■■□□□ 1.03
PTPN6-202ENST00000399448 SOGA1O94964 1423 aa21.5■■□□□ 1.03
PTPN6-202ENST00000399448 WRNQ14191 1432 aaPredicted RBP eCLIP21.47■■□□□ 1.03
PTPN6-202ENST00000399448 ZEB1P37275 1124 aaPredicted RBP21.44■■□□□ 1.02
PTPN6-202ENST00000399448 CSRNP3Q8WYN3 585 aa21.44■■□□□ 1.02
PTPN6-202ENST00000399448 TNIKQ9UKE5 1360 aa21.4■■□□□ 1.02
PTPN6-202ENST00000399448 RUSC2Q8N2Y8 1516 aa21.39■■□□□ 1.01
PTPN6-202ENST00000399448 CEP162Q5TB80 1403 aa21.35■■□□□ 1.01
PTPN6-202ENST00000399448 SYNJ1O43426 1573 aa21.34■■□□□ 1.01
PTPN6-202ENST00000399448 GOLGA3Q08378 1498 aa21.29■■□□□ 1
PTPN6-202ENST00000399448 UBTFP17480 764 aaKnown RBP21.27■■□□□ 1
PTPN6-202ENST00000399448 NCAPD3P42695 1498 aa21.27■■□□□ 1
PTPN6-202ENST00000399448 HMGXB3Q12766 1538 aa21.25■□□□□ 0.99
PTPN6-202ENST00000399448 CEP164Q9UPV0 1460 aa21.21■□□□□ 0.99
PTPN6-202ENST00000399448 KIF21BO75037 1637 aa21.19■□□□□ 0.98
PTPN6-202ENST00000399448 TOP2BQ02880 1626 aa21.16■□□□□ 0.98
PTPN6-202ENST00000399448 BIVM-ERCC5R4GMW8 1640 aa21.1■□□□□ 0.97
PTPN6-202ENST00000399448 CFTRP13569 1480 aa21.01■□□□□ 0.95
PTPN6-202ENST00000399448 CLIP1P30622 1438 aa21.01■□□□□ 0.95
PTPN6-202ENST00000399448 RAPGEF2Q9Y4G8 1499 aa21.01■□□□□ 0.95
PTPN6-202ENST00000399448 TTBK1Q5TCY1 1321 aaPredicted RBP20.98■□□□□ 0.95
PTPN6-202ENST00000399448 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.97■□□□□ 0.95
PTPN6-202ENST00000399448 CCER1Q8TC90 406 aaPredicted RBP20.97■□□□□ 0.95
PTPN6-202ENST00000399448 CUX1P39880 1505 aa20.96■□□□□ 0.95
PTPN6-202ENST00000399448 VPS8Q8N3P4 1428 aa20.92■□□□□ 0.94
PTPN6-202ENST00000399448 ERICH3Q5RHP9 1530 aa20.91■□□□□ 0.94
PTPN6-202ENST00000399448 PRXQ9BXM0 1461 aa20.9■□□□□ 0.94
PTPN6-202ENST00000399448 KIF27Q86VH2 1401 aa20.86■□□□□ 0.93
PTPN6-202ENST00000399448 PRDM2Q13029 1718 aa20.85■□□□□ 0.93
PTPN6-202ENST00000399448 CADPSQ9ULU8 1353 aa20.81■□□□□ 0.92
PTPN6-202ENST00000399448 APLP2Q06481 763 aa20.81■□□□□ 0.92
PTPN6-202ENST00000399448 RANGAP1P46060 587 aaPredicted RBP20.76■□□□□ 0.91
PTPN6-202ENST00000399448 CC2D2AQ9P2K1 1620 aa20.75■□□□□ 0.91
PTPN6-202ENST00000399448 ARAP1Q96P48 1450 aa20.69■□□□□ 0.9
PTPN6-202ENST00000399448 CUX2O14529 1486 aa20.65■□□□□ 0.9
PTPN6-202ENST00000399448 IGF1RP08069 1367 aa20.63■□□□□ 0.89
PTPN6-202ENST00000399448 HNRNPUL2Q1KMD3 747 aaKnown RBP20.63■□□□□ 0.89
PTPN6-202ENST00000399448 FGD5Q6ZNL6 1462 aa20.61■□□□□ 0.89
PTPN6-202ENST00000399448 FANCD2Q9BXW9 1451 aa20.58■□□□□ 0.88
PTPN6-202ENST00000399448 ARHGAP35Q9NRY4 1499 aa20.55■□□□□ 0.88
PTPN6-202ENST00000399448 CARMIL1Q5VZK9 1371 aa20.54■□□□□ 0.88
PTPN6-202ENST00000399448 KANK4Q5T7N3 995 aaPredicted RBP20.51■□□□□ 0.87
PTPN6-202ENST00000399448 DNMBPQ6XZF7 1577 aa20.49■□□□□ 0.87
PTPN6-202ENST00000399448 DIEXFQ68CQ4 756 aaKnown RBP20.45■□□□□ 0.86
PTPN6-202ENST00000399448 TOPBP1Q92547 1522 aa20.43■□□□□ 0.86
PTPN6-202ENST00000399448 RRBP1Q9P2E9 1410 aaKnown RBP20.42■□□□□ 0.86
PTPN6-202ENST00000399448 ABCA10Q8WWZ4 1543 aa20.42■□□□□ 0.86
PTPN6-202ENST00000399448 NESP48681 1621 aa20.42■□□□□ 0.86
PTPN6-202ENST00000399448 ZNF316A6NFI3 1004 aaPredicted RBP20.41■□□□□ 0.86
PTPN6-202ENST00000399448 POLA1P09884 1462 aaPredicted RBP20.4■□□□□ 0.86
PTPN6-202ENST00000399448 RAD54L2Q9Y4B4 1467 aa20.39■□□□□ 0.85
PTPN6-202ENST00000399448 MAP3K1Q13233 1512 aa20.38■□□□□ 0.85
PTPN6-202ENST00000399448 LAMC3Q9Y6N6 1575 aa20.38■□□□□ 0.85
PTPN6-202ENST00000399448 CLSPNQ9HAW4 1339 aa20.35■□□□□ 0.85
PTPN6-202ENST00000399448 CCNB3Q8WWL7 1395 aa20.32■□□□□ 0.84
PTPN6-202ENST00000399448 TIAM1Q13009 1591 aa20.31■□□□□ 0.84
PTPN6-202ENST00000399448 FHAD1B1AJZ9 1412 aa20.3■□□□□ 0.84
PTPN6-202ENST00000399448 CUL7Q14999 1698 aa20.29■□□□□ 0.84
PTPN6-202ENST00000399448 DHX57Q6P158 1386 aaKnown RBP20.28■□□□□ 0.84
PTPN6-202ENST00000399448 URB2Q14146 1524 aaKnown RBP20.28■□□□□ 0.84
PTPN6-202ENST00000399448 PDS5BQ9NTI5 1447 aa20.25■□□□□ 0.83
PTPN6-202ENST00000399448 LRRC9Q6ZRR7 1453 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms