RNA–Protein interactions for RNA: ENST00000398809.8

CDH23-205, Transcript of cadherin related 23, humanhuman

TSL 5 BASIC

Gene CDH23, Length 4,533 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH23-205ENST00000398809 DCAF8L2P0C7V8 631 aa30■■■□□ 2.39
CDH23-205ENST00000398809 NISCHQ9Y2I1 1504 aa29.43■■■□□ 2.3
CDH23-205ENST00000398809 SUPT5HO00267 1087 aaKnown RBP28.96■■■□□ 2.23
CDH23-205ENST00000398809 SHROOM4Q9ULL8 1493 aa28.53■■■□□ 2.16
CDH23-205ENST00000398809 EHMT2Q96KQ7 1210 aa27.86■■■□□ 2.05
CDH23-205ENST00000398809 FAM9AQ8IZU1 332 aaPredicted RBP27.27■■□□□ 1.96
CDH23-205ENST00000398809 PCGF6Q9BYE7 350 aa27.22■■□□□ 1.95
CDH23-205ENST00000398809 TTBK1Q5TCY1 1321 aaPredicted RBP26.92■■□□□ 1.9
CDH23-205ENST00000398809 APLP2Q06481 763 aa26.85■■□□□ 1.89
CDH23-205ENST00000398809 TRIM41Q8WV44 630 aa26.7■■□□□ 1.87
CDH23-205ENST00000398809 RANGAP1P46060 587 aaPredicted RBP26.5■■□□□ 1.83
CDH23-205ENST00000398809 PELP1Q8IZL8 1130 aaKnown RBP26.47■■□□□ 1.83
CDH23-205ENST00000398809 CCER1Q8TC90 406 aaPredicted RBP26.4■■□□□ 1.82
CDH23-205ENST00000398809 ZEB1P37275 1124 aaPredicted RBP26.35■■□□□ 1.81
CDH23-205ENST00000398809 UBTFP17480 764 aaKnown RBP26.24■■□□□ 1.79
CDH23-205ENST00000398809 PPARGC1BQ86YN6 1023 aaKnown RBP26.22■■□□□ 1.79
CDH23-205ENST00000398809 CENPBP07199 599 aaPredicted RBP26.15■■□□□ 1.78
CDH23-205ENST00000398809 CHIC1Q5VXU3 224 aa26.09■■□□□ 1.77
CDH23-205ENST00000398809 LOC105371045A0A1W2PR82 267 aa26.07■■□□□ 1.76
CDH23-205ENST00000398809 ATP1B4Q9UN42 357 aaPredicted RBP26.02■■□□□ 1.76
CDH23-205ENST00000398809 TRIM26Q12899 539 aaPredicted RBP25.99■■□□□ 1.75
CDH23-205ENST00000398809 HRCP23327 699 aa25.98■■□□□ 1.75
CDH23-205ENST00000398809 YTHDC1Q96MU7 727 aaKnown RBP25.84■■□□□ 1.73
CDH23-205ENST00000398809 ITGAEP38570 1179 aa25.46■■□□□ 1.67
CDH23-205ENST00000398809 HNRNPUL2Q1KMD3 747 aaKnown RBP25.45■■□□□ 1.67
CDH23-205ENST00000398809 ERICH6Q7L0X2 663 aa25.43■■□□□ 1.66
CDH23-205ENST00000398809 NEFLP07196 543 aa25.39■■□□□ 1.65
CDH23-205ENST00000398809 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.35■■□□□ 1.65
CDH23-205ENST00000398809 DIEXFQ68CQ4 756 aaKnown RBP25.06■■□□□ 1.6
CDH23-205ENST00000398809 ABCC9O60706 1549 aa25■■□□□ 1.59
CDH23-205ENST00000398809 PABPN1Q86U42 306 aaKnown RBP eCLIP25■■□□□ 1.59
CDH23-205ENST00000398809 POLR3GLQ9BT43 218 aa24.96■■□□□ 1.59
CDH23-205ENST00000398809 CNGB1Q14028 1251 aaPredicted RBP24.9■■□□□ 1.58
CDH23-205ENST00000398809 MYT1Q01538 1121 aa24.83■■□□□ 1.57
CDH23-205ENST00000398809 FAM50AQ14320 339 aaKnown RBP24.74■■□□□ 1.55
CDH23-205ENST00000398809 MYT1LQ9UL68 1186 aa24.66■■□□□ 1.54
CDH23-205ENST00000398809 NEUROD1Q13562 356 aa24.62■■□□□ 1.53
CDH23-205ENST00000398809 GTF3C3Q9Y5Q9 886 aa24.62■■□□□ 1.53
CDH23-205ENST00000398809 CSRNP3Q8WYN3 585 aa24.55■■□□□ 1.52
CDH23-205ENST00000398809 ZNF316A6NFI3 1004 aaPredicted RBP24.49■■□□□ 1.51
CDH23-205ENST00000398809 TRIM52Q96A61 297 aa24.49■■□□□ 1.51
CDH23-205ENST00000398809 BCANQ96GW7 911 aa24.42■■□□□ 1.5
CDH23-205ENST00000398809 ZCCHC6Q5VYS8 1495 aaKnown RBP24.4■■□□□ 1.5
CDH23-205ENST00000398809 DAXXQ9UER7 740 aaPredicted RBP24.39■■□□□ 1.49
CDH23-205ENST00000398809 P3H3Q8IVL6 736 aa24.34■■□□□ 1.49
CDH23-205ENST00000398809 ACIN1Q9UKV3 1341 aaKnown RBP24.31■■□□□ 1.48
CDH23-205ENST00000398809 ANP32CO43423 234 aa24.26■■□□□ 1.47
CDH23-205ENST00000398809 ZNF326Q5BKZ1 582 aaKnown RBP24.25■■□□□ 1.47
CDH23-205ENST00000398809 DCAF1Q9Y4B6 1507 aa24.23■■□□□ 1.47
CDH23-205ENST00000398809 SLC4A1APQ9BWU0 796 aaKnown RBP24.23■■□□□ 1.47
CDH23-205ENST00000398809 SCRIBQ14160 1630 aa24.18■■□□□ 1.46
CDH23-205ENST00000398809 ARID3CA6NKF2 412 aa24.16■■□□□ 1.46
CDH23-205ENST00000398809 FBLN2P98095 1184 aa24.11■■□□□ 1.45
CDH23-205ENST00000398809 MYO15BQ96JP2 1530 aa24.07■■□□□ 1.44
CDH23-205ENST00000398809 CLSPNQ9HAW4 1339 aa24.06■■□□□ 1.44
CDH23-205ENST00000398809 RTL5Q5HYW3 569 aaPredicted RBP24.02■■□□□ 1.43
CDH23-205ENST00000398809 CDK11AQ9UQ88 783 aaPredicted RBP23.94■■□□□ 1.42
CDH23-205ENST00000398809 DDX10Q13206 875 aaKnown RBP23.87■■□□□ 1.41
CDH23-205ENST00000398809 ZNF777Q9ULD5 760 aaPredicted RBP23.87■■□□□ 1.41
CDH23-205ENST00000398809 RSF1Q96T23 1441 aaPredicted RBP23.8■■□□□ 1.4
CDH23-205ENST00000398809 FKBP8Q14318 412 aa23.78■■□□□ 1.4
CDH23-205ENST00000398809 TONSLQ96HA7 1378 aa23.77■■□□□ 1.4
CDH23-205ENST00000398809 SCAF1Q9H7N4 1312 aaKnown RBP23.75■■□□□ 1.39
CDH23-205ENST00000398809 MIER1Q8N108 512 aa23.74■■□□□ 1.39
CDH23-205ENST00000398809 CCDC180Q9P1Z9 1646 aa23.71■■□□□ 1.39
CDH23-205ENST00000398809 HNRNPUQ00839 825 aaKnown RBP eCLIP23.69■■□□□ 1.38
CDH23-205ENST00000398809 CHIC2Q9UKJ5 165 aa23.68■■□□□ 1.38
CDH23-205ENST00000398809 CLIP1P30622 1438 aa23.67■■□□□ 1.38
CDH23-205ENST00000398809 HIRIP3Q9BW71 556 aaPredicted RBP23.63■■□□□ 1.37
CDH23-205ENST00000398809 FAM9BQ8IZU0 186 aa23.62■■□□□ 1.37
CDH23-205ENST00000398809 CEP162Q5TB80 1403 aa23.58■■□□□ 1.36
CDH23-205ENST00000398809 CANXP27824 592 aaKnown RBP23.54■■□□□ 1.36
CDH23-205ENST00000398809 BCL11AQ9H165 835 aa23.53■■□□□ 1.36
CDH23-205ENST00000398809 SALL2Q9Y467 1007 aaPredicted RBP23.5■■□□□ 1.35
CDH23-205ENST00000398809 NPM2Q86SE8 214 aaKnown RBP23.49■■□□□ 1.35
CDH23-205ENST00000398809 ANP32AP39687 249 aaKnown RBP23.48■■□□□ 1.35
CDH23-205ENST00000398809 MTUS2Q5JR59 1369 aa23.46■■□□□ 1.35
CDH23-205ENST00000398809 GOLGA3Q08378 1498 aa23.42■■□□□ 1.34
CDH23-205ENST00000398809 EEA1Q15075 1411 aa23.41■■□□□ 1.34
CDH23-205ENST00000398809 WRNQ14191 1432 aaPredicted RBP eCLIP23.4■■□□□ 1.34
CDH23-205ENST00000398809 MRS2Q9HD23 443 aa23.39■■□□□ 1.33
CDH23-205ENST00000398809 ZBTB47Q9UFB7 747 aaPredicted RBP23.39■■□□□ 1.33
CDH23-205ENST00000398809 IRX6P78412 446 aaPredicted RBP23.37■■□□□ 1.33
CDH23-205ENST00000398809 RRP7BPQ9NSQ0 103 aa23.37■■□□□ 1.33
CDH23-205ENST00000398809 TMC1Q8TDI8 760 aa23.37■■□□□ 1.33
CDH23-205ENST00000398809 TNIKQ9UKE5 1360 aa23.36■■□□□ 1.33
CDH23-205ENST00000398809 KDM2AQ9Y2K7 1162 aa23.35■■□□□ 1.33
CDH23-205ENST00000398809 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.35■■□□□ 1.33
CDH23-205ENST00000398809 CHGAP10645 457 aaKnown RBP23.34■■□□□ 1.33
CDH23-205ENST00000398809 NEFMP07197 916 aa23.31■■□□□ 1.32
CDH23-205ENST00000398809 CECR2Q9BXF3 1484 aa23.3■■□□□ 1.32
CDH23-205ENST00000398809 SLC24A1O60721 1099 aa23.3■■□□□ 1.32
CDH23-205ENST00000398809 CCDC136Q96JN2 1154 aa23.29■■□□□ 1.32
CDH23-205ENST00000398809 TSPY4P0CV99 314 aa23.28■■□□□ 1.32
CDH23-205ENST00000398809 TSPY10P0CW01 314 aa23.28■■□□□ 1.32
CDH23-205ENST00000398809 EIF4G2P78344 907 aaKnown RBP eCLIP23.26■■□□□ 1.31
CDH23-205ENST00000398809 RB1CC1Q8TDY2 1594 aa23.24■■□□□ 1.31
CDH23-205ENST00000398809 SIN3AQ96ST3 1273 aa23.19■■□□□ 1.3
CDH23-205ENST00000398809 CEP164Q9UPV0 1460 aa23.18■■□□□ 1.3
CDH23-205ENST00000398809 SENP3-EIF4A1A0A087X0R7 540 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms