RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 NISCHQ9Y2I1 1504 aa18.97■□□□□ 0.63
HPS4-202ENST00000398145 DCAF8L2P0C7V8 631 aa18.49■□□□□ 0.55
HPS4-202ENST00000398145 SUPT5HO00267 1087 aaKnown RBP18.35■□□□□ 0.53
HPS4-202ENST00000398145 SHROOM4Q9ULL8 1493 aa18.04■□□□□ 0.48
HPS4-202ENST00000398145 PCGF6Q9BYE7 350 aa17.66■□□□□ 0.42
HPS4-202ENST00000398145 EHMT2Q96KQ7 1210 aa17.4■□□□□ 0.38
HPS4-202ENST00000398145 PELP1Q8IZL8 1130 aaKnown RBP17.29■□□□□ 0.36
HPS4-202ENST00000398145 ZEB1P37275 1124 aaPredicted RBP17.28■□□□□ 0.36
HPS4-202ENST00000398145 HRCP23327 699 aa17.24■□□□□ 0.35
HPS4-202ENST00000398145 FAM9AQ8IZU1 332 aaPredicted RBP17.19■□□□□ 0.34
HPS4-202ENST00000398145 CENPBP07199 599 aaPredicted RBP17.1■□□□□ 0.33
HPS4-202ENST00000398145 TRIM41Q8WV44 630 aa17■□□□□ 0.31
HPS4-202ENST00000398145 CCER1Q8TC90 406 aaPredicted RBP16.98■□□□□ 0.31
HPS4-202ENST00000398145 TRIM26Q12899 539 aaPredicted RBP16.96■□□□□ 0.31
HPS4-202ENST00000398145 APLP2Q06481 763 aa16.95■□□□□ 0.3
HPS4-202ENST00000398145 CHIC1Q5VXU3 224 aa16.93■□□□□ 0.3
HPS4-202ENST00000398145 TTBK1Q5TCY1 1321 aaPredicted RBP16.91■□□□□ 0.3
HPS4-202ENST00000398145 MYT1Q01538 1121 aa16.9■□□□□ 0.3
HPS4-202ENST00000398145 PPARGC1BQ86YN6 1023 aaKnown RBP16.82■□□□□ 0.28
HPS4-202ENST00000398145 LOC105371045A0A1W2PR82 267 aa16.77■□□□□ 0.28
HPS4-202ENST00000398145 YTHDC1Q96MU7 727 aaKnown RBP16.63■□□□□ 0.25
HPS4-202ENST00000398145 UBTFP17480 764 aaKnown RBP16.57■□□□□ 0.24
HPS4-202ENST00000398145 RANGAP1P46060 587 aaPredicted RBP16.48■□□□□ 0.23
HPS4-202ENST00000398145 ERICH6Q7L0X2 663 aa16.44■□□□□ 0.22
HPS4-202ENST00000398145 NEFLP07196 543 aa16.38■□□□□ 0.21
HPS4-202ENST00000398145 DIEXFQ68CQ4 756 aaKnown RBP16.36■□□□□ 0.21
HPS4-202ENST00000398145 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.35■□□□□ 0.21
HPS4-202ENST00000398145 GTF3C3Q9Y5Q9 886 aa16.22■□□□□ 0.19
HPS4-202ENST00000398145 HNRNPUL2Q1KMD3 747 aaKnown RBP16.2■□□□□ 0.18
HPS4-202ENST00000398145 ATP1B4Q9UN42 357 aaPredicted RBP16.15■□□□□ 0.18
HPS4-202ENST00000398145 ACIN1Q9UKV3 1341 aaKnown RBP16.13■□□□□ 0.17
HPS4-202ENST00000398145 DCAF1Q9Y4B6 1507 aa16.1■□□□□ 0.17
HPS4-202ENST00000398145 ITGAEP38570 1179 aa16.01■□□□□ 0.15
HPS4-202ENST00000398145 ZNF316A6NFI3 1004 aaPredicted RBP15.99■□□□□ 0.15
HPS4-202ENST00000398145 SCAF1Q9H7N4 1312 aaKnown RBP15.9■□□□□ 0.14
HPS4-202ENST00000398145 MYO15BQ96JP2 1530 aa15.87■□□□□ 0.13
HPS4-202ENST00000398145 ZCCHC6Q5VYS8 1495 aaKnown RBP15.85■□□□□ 0.13
HPS4-202ENST00000398145 NEUROD1Q13562 356 aa15.84■□□□□ 0.13
HPS4-202ENST00000398145 BCANQ96GW7 911 aa15.75■□□□□ 0.11
HPS4-202ENST00000398145 CSRNP3Q8WYN3 585 aa15.69■□□□□ 0.1
HPS4-202ENST00000398145 CLSPNQ9HAW4 1339 aa15.68■□□□□ 0.1
HPS4-202ENST00000398145 POLR3GLQ9BT43 218 aa15.64■□□□□ 0.09
HPS4-202ENST00000398145 DAXXQ9UER7 740 aaPredicted RBP15.64■□□□□ 0.09
HPS4-202ENST00000398145 ANP32CO43423 234 aa15.62■□□□□ 0.09
HPS4-202ENST00000398145 RTL5Q5HYW3 569 aaPredicted RBP15.62■□□□□ 0.09
HPS4-202ENST00000398145 FAM50AQ14320 339 aaKnown RBP15.62■□□□□ 0.09
HPS4-202ENST00000398145 CDK11AQ9UQ88 783 aaPredicted RBP15.58■□□□□ 0.09
HPS4-202ENST00000398145 CCDC180Q9P1Z9 1646 aa15.58■□□□□ 0.08
HPS4-202ENST00000398145 CNGB1Q14028 1251 aaPredicted RBP15.58■□□□□ 0.08
HPS4-202ENST00000398145 MIER1Q8N108 512 aa15.52■□□□□ 0.08
HPS4-202ENST00000398145 ABCC9O60706 1549 aa15.5■□□□□ 0.07
HPS4-202ENST00000398145 FKBP8Q14318 412 aa15.47■□□□□ 0.07
HPS4-202ENST00000398145 PABPN1Q86U42 306 aaKnown RBP eCLIP15.41■□□□□ 0.06
HPS4-202ENST00000398145 TRIM52Q96A61 297 aa15.41■□□□□ 0.06
HPS4-202ENST00000398145 SCRIBQ14160 1630 aa15.38■□□□□ 0.05
HPS4-202ENST00000398145 DDX10Q13206 875 aaKnown RBP15.35■□□□□ 0.05
HPS4-202ENST00000398145 RSF1Q96T23 1441 aaPredicted RBP15.35■□□□□ 0.05
HPS4-202ENST00000398145 ANP32AP39687 249 aaKnown RBP15.28■□□□□ 0.04
HPS4-202ENST00000398145 CEP162Q5TB80 1403 aa15.28■□□□□ 0.04
HPS4-202ENST00000398145 HNRNPUQ00839 825 aaKnown RBP eCLIP15.27■□□□□ 0.04
HPS4-202ENST00000398145 MYT1LQ9UL68 1186 aa15.24■□□□□ 0.03
HPS4-202ENST00000398145 TONSLQ96HA7 1378 aa15.23■□□□□ 0.03
HPS4-202ENST00000398145 CLIP1P30622 1438 aa15.22■□□□□ 0.03
HPS4-202ENST00000398145 P3H3Q8IVL6 736 aa15.22■□□□□ 0.03
HPS4-202ENST00000398145 ANP32EQ9BTT0 268 aa15.21■□□□□ 0.03
HPS4-202ENST00000398145 ZNF326Q5BKZ1 582 aaKnown RBP15.21■□□□□ 0.03
HPS4-202ENST00000398145 EEA1Q15075 1411 aa15.2■□□□□ 0.02
HPS4-202ENST00000398145 TNIKQ9UKE5 1360 aa15.17■□□□□ 0.02
HPS4-202ENST00000398145 GOLGA3Q08378 1498 aa15.14■□□□□ 0.01
HPS4-202ENST00000398145 SUPT16HQ9Y5B9 1047 aaKnown RBP15.13■□□□□ 0.01
HPS4-202ENST00000398145 FAM9BQ8IZU0 186 aa15.12■□□□□ 0.01
HPS4-202ENST00000398145 NPM2Q86SE8 214 aaKnown RBP15.1■□□□□ 0.01
HPS4-202ENST00000398145 RB1CC1Q8TDY2 1594 aa15.08■□□□□ 0
HPS4-202ENST00000398145 HIRIP3Q9BW71 556 aaPredicted RBP15.07■□□□□ 0
HPS4-202ENST00000398145 IRX6P78412 446 aaPredicted RBP15.06■□□□□ 0
HPS4-202ENST00000398145 CCDC136Q96JN2 1154 aa15.05■□□□□ 0
HPS4-202ENST00000398145 NBR1Q14596 966 aa15.05■□□□□ -0
HPS4-202ENST00000398145 ZBTB47Q9UFB7 747 aaPredicted RBP15.04■□□□□ -0
HPS4-202ENST00000398145 SLC4A1APQ9BWU0 796 aaKnown RBP15.04■□□□□ -0
HPS4-202ENST00000398145 MRS2Q9HD23 443 aa15.02■□□□□ -0
HPS4-202ENST00000398145 WRNQ14191 1432 aaPredicted RBP eCLIP14.98□□□□□ -0.019e-6■■■■■ 50.1
HPS4-202ENST00000398145 CEP164Q9UPV0 1460 aa14.98□□□□□ -0.01
HPS4-202ENST00000398145 EIF5BO60841 1220 aaKnown RBP14.96□□□□□ -0.02
HPS4-202ENST00000398145 ARID3CA6NKF2 412 aa14.95□□□□□ -0.02
HPS4-202ENST00000398145 TMC1Q8TDI8 760 aa14.94□□□□□ -0.02
HPS4-202ENST00000398145 EIF4G2P78344 907 aaKnown RBP eCLIP14.94□□□□□ -0.02
HPS4-202ENST00000398145 CANXP27824 592 aaKnown RBP14.93□□□□□ -0.02
HPS4-202ENST00000398145 CHIC2Q9UKJ5 165 aa14.91□□□□□ -0.02
HPS4-202ENST00000398145 SOGA1O94964 1423 aa14.9□□□□□ -0.02
HPS4-202ENST00000398145 CECR2Q9BXF3 1484 aa14.89□□□□□ -0.03
HPS4-202ENST00000398145 SALL2Q9Y467 1007 aaPredicted RBP14.88□□□□□ -0.03
HPS4-202ENST00000398145 MTUS2Q5JR59 1369 aa14.88□□□□□ -0.03
HPS4-202ENST00000398145 BCL11AQ9H165 835 aa14.88□□□□□ -0.03
HPS4-202ENST00000398145 SIN3AQ96ST3 1273 aa14.86□□□□□ -0.03
HPS4-202ENST00000398145 ZNF777Q9ULD5 760 aaPredicted RBP14.86□□□□□ -0.03
HPS4-202ENST00000398145 RBM19Q9Y4C8 960 aaKnown RBP14.86□□□□□ -0.03
HPS4-202ENST00000398145 TSHZ2Q9NRE2 1034 aa14.86□□□□□ -0.03
HPS4-202ENST00000398145 PPP4R2Q9NY27 417 aa14.85□□□□□ -0.03
HPS4-202ENST00000398145 CCNB3Q8WWL7 1395 aa14.83□□□□□ -0.04
HPS4-202ENST00000398145 VPS8Q8N3P4 1428 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms