RNA–Protein interactions for RNA: ENST00000397477.2

CPSF1P1-201, Transcript of cleavage and polyadenylation specific factor 1 pseudogene 1, humanhuman

BASIC

Gene CPSF1P1, Length 3,730 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1P1-201ENST00000397477 NISCHQ9Y2I1 1504 aa20.86■□□□□ 0.93
CPSF1P1-201ENST00000397477 SHROOM4Q9ULL8 1493 aa18.68■□□□□ 0.58
CPSF1P1-201ENST00000397477 DCAF8L2P0C7V8 631 aa18.66■□□□□ 0.58
CPSF1P1-201ENST00000397477 SUPT5HO00267 1087 aaKnown RBP18.39■□□□□ 0.54
CPSF1P1-201ENST00000397477 ZCCHC6Q5VYS8 1495 aaKnown RBP17.52■□□□□ 0.39
CPSF1P1-201ENST00000397477 CHIC1Q5VXU3 224 aa17.35■□□□□ 0.37
CPSF1P1-201ENST00000397477 CCDC180Q9P1Z9 1646 aa17.35■□□□□ 0.37
CPSF1P1-201ENST00000397477 EHMT2Q96KQ7 1210 aa17.32■□□□□ 0.36
CPSF1P1-201ENST00000397477 FAM9AQ8IZU1 332 aaPredicted RBP17.16■□□□□ 0.34
CPSF1P1-201ENST00000397477 LOC105371045A0A1W2PR82 267 aa17.14■□□□□ 0.34
CPSF1P1-201ENST00000397477 PCGF6Q9BYE7 350 aa17.14■□□□□ 0.33
CPSF1P1-201ENST00000397477 ABCC9O60706 1549 aa17.08■□□□□ 0.33
CPSF1P1-201ENST00000397477 MYO15BQ96JP2 1530 aa17.01■□□□□ 0.31
CPSF1P1-201ENST00000397477 TRIM41Q8WV44 630 aa16.94■□□□□ 0.3
CPSF1P1-201ENST00000397477 SCRIBQ14160 1630 aa16.9■□□□□ 0.3
CPSF1P1-201ENST00000397477 DCAF1Q9Y4B6 1507 aa16.73■□□□□ 0.27
CPSF1P1-201ENST00000397477 PPARGC1BQ86YN6 1023 aaKnown RBP16.72■□□□□ 0.27
CPSF1P1-201ENST00000397477 HRCP23327 699 aa16.69■□□□□ 0.26
CPSF1P1-201ENST00000397477 TTBK1Q5TCY1 1321 aaPredicted RBP16.67■□□□□ 0.26
CPSF1P1-201ENST00000397477 RSF1Q96T23 1441 aaPredicted RBP16.65■□□□□ 0.26
CPSF1P1-201ENST00000397477 PABPN1Q86U42 306 aaKnown RBP eCLIP16.63■□□□□ 0.25
CPSF1P1-201ENST00000397477 CECR2Q9BXF3 1484 aa16.53■□□□□ 0.24
CPSF1P1-201ENST00000397477 TRIM26Q12899 539 aaPredicted RBP16.5■□□□□ 0.23
CPSF1P1-201ENST00000397477 RANGAP1P46060 587 aaPredicted RBP16.41■□□□□ 0.22
CPSF1P1-201ENST00000397477 RB1CC1Q8TDY2 1594 aa16.4■□□□□ 0.22
CPSF1P1-201ENST00000397477 MROH2BQ7Z745 1585 aa16.34■□□□□ 0.21
CPSF1P1-201ENST00000397477 NACADO15069 1562 aa16.34■□□□□ 0.21
CPSF1P1-201ENST00000397477 UBTFP17480 764 aaKnown RBP16.33■□□□□ 0.2
CPSF1P1-201ENST00000397477 WIZO95785 1651 aa16.2■□□□□ 0.18
CPSF1P1-201ENST00000397477 CCER1Q8TC90 406 aaPredicted RBP16.17■□□□□ 0.18
CPSF1P1-201ENST00000397477 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.17■□□□□ 0.18
CPSF1P1-201ENST00000397477 ZEB1P37275 1124 aaPredicted RBP16.07■□□□□ 0.16
CPSF1P1-201ENST00000397477 BAZ1AQ9NRL2 1556 aaPredicted RBP16.04■□□□□ 0.16
CPSF1P1-201ENST00000397477 ABCC8Q09428 1581 aa16.01■□□□□ 0.15
CPSF1P1-201ENST00000397477 CSRNP3Q8WYN3 585 aa16.01■□□□□ 0.15
CPSF1P1-201ENST00000397477 APLP2Q06481 763 aa16■□□□□ 0.15
CPSF1P1-201ENST00000397477 CCDC88BA6NC98 1476 aa15.98■□□□□ 0.15
CPSF1P1-201ENST00000397477 HNRNPUL2Q1KMD3 747 aaKnown RBP15.95■□□□□ 0.14
CPSF1P1-201ENST00000397477 SOGA1O94964 1423 aa15.94■□□□□ 0.14
CPSF1P1-201ENST00000397477 SMARCA4P51532 1647 aa15.84■□□□□ 0.13
CPSF1P1-201ENST00000397477 RUSC2Q8N2Y8 1516 aa15.82■□□□□ 0.12
CPSF1P1-201ENST00000397477 TOP2AP11388 1531 aaKnown RBP15.82■□□□□ 0.12
CPSF1P1-201ENST00000397477 CEP162Q5TB80 1403 aa15.8■□□□□ 0.12
CPSF1P1-201ENST00000397477 WRNQ14191 1432 aaPredicted RBP eCLIP15.78■□□□□ 0.12
CPSF1P1-201ENST00000397477 ATP1B4Q9UN42 357 aaPredicted RBP15.78■□□□□ 0.12
CPSF1P1-201ENST00000397477 ITGAEP38570 1179 aa15.75■□□□□ 0.11
CPSF1P1-201ENST00000397477 SMARCA2P51531 1590 aa15.74■□□□□ 0.11
CPSF1P1-201ENST00000397477 BAZ1BQ9UIG0 1483 aaKnown RBP15.73■□□□□ 0.11
CPSF1P1-201ENST00000397477 YTHDC1Q96MU7 727 aaKnown RBP15.67■□□□□ 0.1
CPSF1P1-201ENST00000397477 TNIKQ9UKE5 1360 aa15.66■□□□□ 0.1
CPSF1P1-201ENST00000397477 DIEXFQ68CQ4 756 aaKnown RBP15.63■□□□□ 0.09
CPSF1P1-201ENST00000397477 ATAD2BQ9ULI0 1458 aa15.62■□□□□ 0.09
CPSF1P1-201ENST00000397477 GOLGA3Q08378 1498 aa15.61■□□□□ 0.09
CPSF1P1-201ENST00000397477 CLIP1P30622 1438 aa15.6■□□□□ 0.09
CPSF1P1-201ENST00000397477 UNC13AQ9UPW8 1703 aa15.6■□□□□ 0.09
CPSF1P1-201ENST00000397477 BICRAQ9NZM4 1560 aa15.6■□□□□ 0.09
CPSF1P1-201ENST00000397477 P3H3Q8IVL6 736 aa15.58■□□□□ 0.08
CPSF1P1-201ENST00000397477 EEA1Q15075 1411 aa15.56■□□□□ 0.08
CPSF1P1-201ENST00000397477 CEP164Q9UPV0 1460 aa15.5■□□□□ 0.07
CPSF1P1-201ENST00000397477 RAPGEF2Q9Y4G8 1499 aa15.48■□□□□ 0.07
CPSF1P1-201ENST00000397477 EIF4G1Q04637 1599 aaKnown RBP15.47■□□□□ 0.07
CPSF1P1-201ENST00000397477 SYNJ1O43426 1573 aa15.45■□□□□ 0.06
CPSF1P1-201ENST00000397477 CENPBP07199 599 aaPredicted RBP15.43■□□□□ 0.06
CPSF1P1-201ENST00000397477 ZNF316A6NFI3 1004 aaPredicted RBP15.43■□□□□ 0.06
CPSF1P1-201ENST00000397477 KANK4Q5T7N3 995 aaPredicted RBP15.41■□□□□ 0.06
CPSF1P1-201ENST00000397477 FAM50AQ14320 339 aaKnown RBP15.4■□□□□ 0.06
CPSF1P1-201ENST00000397477 SCAF1Q9H7N4 1312 aaKnown RBP15.4■□□□□ 0.06
CPSF1P1-201ENST00000397477 NEUROD1Q13562 356 aa15.37■□□□□ 0.05
CPSF1P1-201ENST00000397477 VPS8Q8N3P4 1428 aa15.34■□□□□ 0.05
CPSF1P1-201ENST00000397477 KIF27Q86VH2 1401 aa15.33■□□□□ 0.04
CPSF1P1-201ENST00000397477 PELP1Q8IZL8 1130 aaKnown RBP15.32■□□□□ 0.04
CPSF1P1-201ENST00000397477 GTF3C3Q9Y5Q9 886 aa15.32■□□□□ 0.04
CPSF1P1-201ENST00000397477 ARID3CA6NKF2 412 aa15.3■□□□□ 0.04
CPSF1P1-201ENST00000397477 ACIN1Q9UKV3 1341 aaKnown RBP15.3■□□□□ 0.04
CPSF1P1-201ENST00000397477 CUX2O14529 1486 aa15.28■□□□□ 0.04
CPSF1P1-201ENST00000397477 MIER1Q8N108 512 aa15.27■□□□□ 0.04
CPSF1P1-201ENST00000397477 PEG3Q9GZU2 1588 aa15.23■□□□□ 0.03
CPSF1P1-201ENST00000397477 NCAPD3P42695 1498 aa15.23■□□□□ 0.03
CPSF1P1-201ENST00000397477 CARMIL1Q5VZK9 1371 aa15.19■□□□□ 0.02
CPSF1P1-201ENST00000397477 KIF21BO75037 1637 aa15.19■□□□□ 0.02
CPSF1P1-201ENST00000397477 CADPSQ9ULU8 1353 aa15.18■□□□□ 0.02
CPSF1P1-201ENST00000397477 CUX1P39880 1505 aa15.17■□□□□ 0.02
CPSF1P1-201ENST00000397477 TOP2BQ02880 1626 aa15.14■□□□□ 0.01
CPSF1P1-201ENST00000397477 HIRIP3Q9BW71 556 aaPredicted RBP15.13■□□□□ 0.01
CPSF1P1-201ENST00000397477 DNAJC5BQ9UF47 199 aa15.13■□□□□ 0.01
CPSF1P1-201ENST00000397477 ARAP1Q96P48 1450 aa15.12■□□□□ 0.01
CPSF1P1-201ENST00000397477 IGF1RP08069 1367 aa15.12■□□□□ 0.01
CPSF1P1-201ENST00000397477 CFTRP13569 1480 aa15.12■□□□□ 0.01
CPSF1P1-201ENST00000397477 PRXQ9BXM0 1461 aa15.09■□□□□ 0.01
CPSF1P1-201ENST00000397477 TDRD9Q8NDG6 1382 aaKnown RBP15.09■□□□□ 0.01
CPSF1P1-201ENST00000397477 CCNB3Q8WWL7 1395 aa15.09■□□□□ 0.01
CPSF1P1-201ENST00000397477 SIN3AQ96ST3 1273 aa15.08■□□□□ 0.01
CPSF1P1-201ENST00000397477 RAD54L2Q9Y4B4 1467 aa15.07■□□□□ 0
CPSF1P1-201ENST00000397477 FGD5Q6ZNL6 1462 aa15.07■□□□□ 0
CPSF1P1-201ENST00000397477 NESP48681 1621 aa15.05■□□□□ -0
CPSF1P1-201ENST00000397477 FBLN2P98095 1184 aa15.05■□□□□ -0
CPSF1P1-201ENST00000397477 CHIC2Q9UKJ5 165 aa15.05■□□□□ -0
CPSF1P1-201ENST00000397477 HMGXB3Q12766 1538 aa15.04■□□□□ -0
CPSF1P1-201ENST00000397477 FANCD2Q9BXW9 1451 aa15.03■□□□□ -0
CPSF1P1-201ENST00000397477 FHOD3Q2V2M9 1422 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms