RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 NISCHQ9Y2I1 1504 aa12.43□□□□□ -0.42
VPS41-203ENST00000395969 CCDC180Q9P1Z9 1646 aa11.12□□□□□ -0.63
VPS41-203ENST00000395969 AEBP2Q6ZN18 517 aaPredicted RBP11□□□□□ -0.65
VPS41-203ENST00000395969 CHIC1Q5VXU3 224 aa10.66□□□□□ -0.7
VPS41-203ENST00000395969 DCAF1Q9Y4B6 1507 aa10.62□□□□□ -0.71
VPS41-203ENST00000395969 ZCCHC6Q5VYS8 1495 aaKnown RBP10.54□□□□□ -0.72
VPS41-203ENST00000395969 MYO15BQ96JP2 1530 aa10.53□□□□□ -0.72
VPS41-203ENST00000395969 NACADO15069 1562 aa10.18□□□□□ -0.78
VPS41-203ENST00000395969 RB1CC1Q8TDY2 1594 aa9.96□□□□□ -0.81
VPS41-203ENST00000395969 SHROOM4Q9ULL8 1493 aa9.93□□□□□ -0.82
VPS41-203ENST00000395969 ABCC9O60706 1549 aa9.9□□□□□ -0.82
VPS41-203ENST00000395969 UNC13AQ9UPW8 1703 aa9.86□□□□□ -0.83
VPS41-203ENST00000395969 SCRIBQ14160 1630 aa9.7□□□□□ -0.86
VPS41-203ENST00000395969 PEG3Q9GZU2 1588 aa9.69□□□□□ -0.86
VPS41-203ENST00000395969 BICRAQ9NZM4 1560 aa9.69□□□□□ -0.86
VPS41-203ENST00000395969 PHF23Q9BUL5 403 aaPredicted RBP9.67□□□□□ -0.86
VPS41-203ENST00000395969 BAZ1AQ9NRL2 1556 aaPredicted RBP9.61□□□□□ -0.87
VPS41-203ENST00000395969 SMARCA4P51532 1647 aa9.56□□□□□ -0.88
VPS41-203ENST00000395969 RSF1Q96T23 1441 aaPredicted RBP9.55□□□□□ -0.88
VPS41-203ENST00000395969 EIF4G1Q04637 1599 aaKnown RBP9.52□□□□□ -0.89
VPS41-203ENST00000395969 SMARCA2P51531 1590 aa9.48□□□□□ -0.89
VPS41-203ENST00000395969 TOP2AP11388 1531 aaKnown RBP9.48□□□□□ -0.89
VPS41-203ENST00000395969 MROH2BQ7Z745 1585 aa9.47□□□□□ -0.89
VPS41-203ENST00000395969 HMGXB3Q12766 1538 aa9.41□□□□□ -0.9
VPS41-203ENST00000395969 CECR2Q9BXF3 1484 aa9.41□□□□□ -0.9
VPS41-203ENST00000395969 WIZO95785 1651 aa9.4□□□□□ -0.91
VPS41-203ENST00000395969 SLC24A1O60721 1099 aa9.38□□□□□ -0.91
VPS41-203ENST00000395969 PRDM2Q13029 1718 aa9.35□□□□□ -0.91
VPS41-203ENST00000395969 NCAPD3P42695 1498 aa9.31□□□□□ -0.92
VPS41-203ENST00000395969 ATAD2BQ9ULI0 1458 aa9.29□□□□□ -0.92
VPS41-203ENST00000395969 DCAF8L2P0C7V8 631 aa9.26□□□□□ -0.93
VPS41-203ENST00000395969 CCDC88BA6NC98 1476 aa9.2□□□□□ -0.94
VPS41-203ENST00000395969 BIVM-ERCC5R4GMW8 1640 aa9.17□□□□□ -0.94
VPS41-203ENST00000395969 EHMT2Q96KQ7 1210 aa9.16□□□□□ -0.94
VPS41-203ENST00000395969 BAZ1BQ9UIG0 1483 aaKnown RBP9.15□□□□□ -0.95
VPS41-203ENST00000395969 CFTRP13569 1480 aa9.08□□□□□ -0.96
VPS41-203ENST00000395969 CC2D2AQ9P2K1 1620 aa9.08□□□□□ -0.96
VPS41-203ENST00000395969 TOP2BQ02880 1626 aa9.07□□□□□ -0.96
VPS41-203ENST00000395969 SUPT5HO00267 1087 aaKnown RBP9.07□□□□□ -0.96
VPS41-203ENST00000395969 EEA1Q15075 1411 aa9.06□□□□□ -0.96
VPS41-203ENST00000395969 LAMC3Q9Y6N6 1575 aa9.02□□□□□ -0.97
VPS41-203ENST00000395969 KIF21BO75037 1637 aa8.99□□□□□ -0.97
VPS41-203ENST00000395969 WDR97A6NE52 1622 aa8.98□□□□□ -0.97
VPS41-203ENST00000395969 SYNJ1O43426 1573 aa8.97□□□□□ -0.97
VPS41-203ENST00000395969 PABPN1Q86U42 306 aaKnown RBP eCLIP8.94□□□□□ -0.98
VPS41-203ENST00000395969 ERICH3Q5RHP9 1530 aa8.92□□□□□ -0.98
VPS41-203ENST00000395969 ABCC8Q09428 1581 aa8.92□□□□□ -0.98
VPS41-203ENST00000395969 WRNQ14191 1432 aaPredicted RBP eCLIP8.91□□□□□ -0.98
VPS41-203ENST00000395969 SENP3Q9H4L4 574 aaPredicted RBP8.9□□□□□ -0.98
VPS41-203ENST00000395969 CADPSQ9ULU8 1353 aa8.9□□□□□ -0.99
VPS41-203ENST00000395969 DNMBPQ6XZF7 1577 aa8.89□□□□□ -0.99
VPS41-203ENST00000395969 CUX1P39880 1505 aa8.89□□□□□ -0.99
VPS41-203ENST00000395969 PLPPR3Q6T4P5 718 aa8.88□□□□□ -0.99
VPS41-203ENST00000395969 HRCP23327 699 aa8.82□□□□□ -1
VPS41-203ENST00000395969 PRXQ9BXM0 1461 aa8.82□□□□□ -1
VPS41-203ENST00000395969 ABCA5Q8WWZ7 1642 aa8.81□□□□□ -1
VPS41-203ENST00000395969 CUL7Q14999 1698 aa8.81□□□□□ -1
VPS41-203ENST00000395969 ABCA10Q8WWZ4 1543 aa8.8□□□□□ -1
VPS41-203ENST00000395969 CEP164Q9UPV0 1460 aa8.79□□□□□ -1
VPS41-203ENST00000395969 WDR62O43379 1518 aa8.78□□□□□ -1
VPS41-203ENST00000395969 TNIKQ9UKE5 1360 aa8.78□□□□□ -1
VPS41-203ENST00000395969 TARBP1Q13395 1621 aaKnown RBP8.77□□□□□ -1.01
VPS41-203ENST00000395969 FANCD2Q9BXW9 1451 aa8.77□□□□□ -1.01
VPS41-203ENST00000395969 KIF21AQ7Z4S6 1674 aa8.77□□□□□ -1.01
VPS41-203ENST00000395969 GOLGA3Q08378 1498 aa8.76□□□□□ -1.01
VPS41-203ENST00000395969 TOPBP1Q92547 1522 aa8.76□□□□□ -1.01
VPS41-203ENST00000395969 TRIM41Q8WV44 630 aa8.74□□□□□ -1.01
VPS41-203ENST00000395969 PDS5BQ9NTI5 1447 aa8.73□□□□□ -1.01
VPS41-203ENST00000395969 THOC2Q8NI27 1593 aaKnown RBP8.73□□□□□ -1.01
VPS41-203ENST00000395969 URB2Q14146 1524 aaKnown RBP8.71□□□□□ -1.01
VPS41-203ENST00000395969 MAP3K1Q13233 1512 aa8.71□□□□□ -1.02
VPS41-203ENST00000395969 SOGA1O94964 1423 aa8.7□□□□□ -1.02
VPS41-203ENST00000395969 PELP1Q8IZL8 1130 aaKnown RBP8.7□□□□□ -1.02
VPS41-203ENST00000395969 CTTNBP2Q8WZ74 1663 aa8.7□□□□□ -1.02
VPS41-203ENST00000395969 KIF27Q86VH2 1401 aa8.7□□□□□ -1.02
VPS41-203ENST00000395969 FGD5Q6ZNL6 1462 aa8.7□□□□□ -1.02
VPS41-203ENST00000395969 RTN4Q9NQC3 1192 aaKnown RBP8.69□□□□□ -1.02
VPS41-203ENST00000395969 POLA1P09884 1462 aaPredicted RBP8.68□□□□□ -1.02
VPS41-203ENST00000395969 PBRM1Q86U86 1689 aa8.68□□□□□ -1.02
VPS41-203ENST00000395969 MRC2Q9UBG0 1479 aa8.68□□□□□ -1.02
VPS41-203ENST00000395969 ADRA2BP18089 450 aa8.67□□□□□ -1.02
VPS41-203ENST00000395969 RUSC2Q8N2Y8 1516 aa8.66□□□□□ -1.02
VPS41-203ENST00000395969 EFCAB5A4FU69 1503 aa8.66□□□□□ -1.02
VPS41-203ENST00000395969 SAMD9Q5K651 1589 aa8.64□□□□□ -1.03
VPS41-203ENST00000395969 CSRNP3Q8WYN3 585 aa8.63□□□□□ -1.03
VPS41-203ENST00000395969 AQRO60306 1485 aaKnown RBP eCLIP8.62□□□□□ -1.036e-6■■■■□ 25.1
VPS41-203ENST00000395969 ADAMTS12P58397 1594 aa8.62□□□□□ -1.03
VPS41-203ENST00000395969 IFT140Q96RY7 1462 aa8.62□□□□□ -1.03
VPS41-203ENST00000395969 NESP48681 1621 aa8.61□□□□□ -1.03
VPS41-203ENST00000395969 RAPGEF2Q9Y4G8 1499 aa8.61□□□□□ -1.03
VPS41-203ENST00000395969 IGF1RP08069 1367 aa8.61□□□□□ -1.03
VPS41-203ENST00000395969 CUX2O14529 1486 aa8.6□□□□□ -1.03
VPS41-203ENST00000395969 CEP162Q5TB80 1403 aa8.6□□□□□ -1.03
VPS41-203ENST00000395969 CFAP43Q8NDM7 1665 aa8.6□□□□□ -1.03
VPS41-203ENST00000395969 PPP6R1Q9UPN7 881 aa8.59□□□□□ -1.03
VPS41-203ENST00000395969 PPARGC1BQ86YN6 1023 aaKnown RBP8.57□□□□□ -1.04
VPS41-203ENST00000395969 VPS8Q8N3P4 1428 aa8.56□□□□□ -1.04
VPS41-203ENST00000395969 ARAP1Q96P48 1450 aa8.55□□□□□ -1.04
VPS41-203ENST00000395969 UGGT2Q9NYU1 1516 aa8.53□□□□□ -1.04
VPS41-203ENST00000395969 MAGI1Q96QZ7 1491 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms