RNA–Protein interactions for RNA: ENST00000390462.1

TRAV35-201, Transcript of T cell receptor alpha variable 35, humanhuman

BASIC

Gene TRAV35, Length 330 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV35-201ENST00000390462 CHIC1Q5VXU3 224 aa19.79■□□□□ 0.76
TRAV35-201ENST00000390462 AEBP2Q6ZN18 517 aaPredicted RBP19.71■□□□□ 0.75
TRAV35-201ENST00000390462 PHF23Q9BUL5 403 aaPredicted RBP17.46■□□□□ 0.39
TRAV35-201ENST00000390462 SENP3Q9H4L4 574 aaPredicted RBP16.63■□□□□ 0.25
TRAV35-201ENST00000390462 PLPPR3Q6T4P5 718 aa16.3■□□□□ 0.2
TRAV35-201ENST00000390462 FOXD1Q16676 465 aa15.36■□□□□ 0.05
TRAV35-201ENST00000390462 EHMT2Q96KQ7 1210 aa15.35■□□□□ 0.05
TRAV35-201ENST00000390462 ADRA2BP18089 450 aa15.25■□□□□ 0.03
TRAV35-201ENST00000390462 PPP6R1Q9UPN7 881 aa15.22■□□□□ 0.03
TRAV35-201ENST00000390462 SLC24A1O60721 1099 aa14.83□□□□□ -0.04
TRAV35-201ENST00000390462 KCNA4P22459 653 aa14.82□□□□□ -0.04
TRAV35-201ENST00000390462 PIAS4Q8N2W9 510 aaPredicted RBP14.62□□□□□ -0.07
TRAV35-201ENST00000390462 CSRNP3Q8WYN3 585 aa14.6□□□□□ -0.07
TRAV35-201ENST00000390462 PPP4R3CPQ6ZMV5 832 aa14.44□□□□□ -0.1
TRAV35-201ENST00000390462 SLC4A1APQ9BWU0 796 aaKnown RBP14.33□□□□□ -0.12
TRAV35-201ENST00000390462 NCBP3Q53F19 620 aaKnown RBP14.21□□□□□ -0.13
TRAV35-201ENST00000390462 RTN4Q9NQC3 1192 aaKnown RBP14.14□□□□□ -0.15
TRAV35-201ENST00000390462 AMER1Q5JTC6 1135 aaPredicted RBP14.11□□□□□ -0.15
TRAV35-201ENST00000390462 NPM3O75607 178 aaKnown RBP14.02□□□□□ -0.17
TRAV35-201ENST00000390462 MSH5O43196 834 aa13.95□□□□□ -0.18
TRAV35-201ENST00000390462 SCAF1Q9H7N4 1312 aaKnown RBP13.91□□□□□ -0.18
TRAV35-201ENST00000390462 CNKSR2Q8WXI2 1034 aa13.91□□□□□ -0.18
TRAV35-201ENST00000390462 ZBTB22O15209 634 aa13.66□□□□□ -0.22
TRAV35-201ENST00000390462 MAPK8IP2Q13387 824 aaPredicted RBP13.65□□□□□ -0.22
TRAV35-201ENST00000390462 DNAJC5BQ9UF47 199 aa13.55□□□□□ -0.24
TRAV35-201ENST00000390462 RNF216Q9NWF9 866 aaPredicted RBP13.51□□□□□ -0.25
TRAV35-201ENST00000390462 FOXD4L1Q9NU39 408 aa13.4□□□□□ -0.26
TRAV35-201ENST00000390462 DMRT2Q9Y5R5 561 aa13.37□□□□□ -0.27
TRAV35-201ENST00000390462 HOXD11P31277 338 aaPredicted RBP13.31□□□□□ -0.28
TRAV35-201ENST00000390462 FKBP8Q14318 412 aa13.12□□□□□ -0.31
TRAV35-201ENST00000390462 SLC4A2P04920 1241 aa13.1□□□□□ -0.31
TRAV35-201ENST00000390462 PRKCSHP14314 528 aaPredicted RBP12.99□□□□□ -0.33
TRAV35-201ENST00000390462 MYCNP04198 464 aaPredicted RBP12.94□□□□□ -0.34
TRAV35-201ENST00000390462 PLCB2Q00722 1185 aa12.94□□□□□ -0.34
TRAV35-201ENST00000390462 BCANQ96GW7 911 aa12.91□□□□□ -0.34
TRAV35-201ENST00000390462 ATXN8OSP0DMR3 200 aa12.88□□□□□ -0.35
TRAV35-201ENST00000390462 TAOK2Q9UL54 1235 aa12.86□□□□□ -0.35
TRAV35-201ENST00000390462 HAP1P54257 671 aaPredicted RBP12.78□□□□□ -0.36
TRAV35-201ENST00000390462 DCAF8L1A6NGE4 600 aa12.73□□□□□ -0.37
TRAV35-201ENST00000390462 DAXXQ9UER7 740 aaPredicted RBP12.68□□□□□ -0.38
TRAV35-201ENST00000390462 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.67□□□□□ -0.38
TRAV35-201ENST00000390462 TPRNQ4KMQ1 711 aa12.64□□□□□ -0.39
TRAV35-201ENST00000390462 VSIG10Q8N0Z9 540 aa12.62□□□□□ -0.39
TRAV35-201ENST00000390462 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.56□□□□□ -0.4
TRAV35-201ENST00000390462 HNRNPUL2Q1KMD3 747 aaKnown RBP12.56□□□□□ -0.4
TRAV35-201ENST00000390462 ATF5Q9Y2D1 282 aaPredicted RBP12.55□□□□□ -0.4
TRAV35-201ENST00000390462 SAMD1Q6SPF0 538 aaPredicted RBP12.54□□□□□ -0.4
TRAV35-201ENST00000390462 U3KPZ7 1027 aaPredicted RBP12.54□□□□□ -0.4
TRAV35-201ENST00000390462 ARXQ96QS3 562 aa12.47□□□□□ -0.41
TRAV35-201ENST00000390462 TIMELESSQ9UNS1 1208 aa12.45□□□□□ -0.42
TRAV35-201ENST00000390462 DCAF8L2P0C7V8 631 aa12.4□□□□□ -0.42
TRAV35-201ENST00000390462 TULP1O00294 542 aaPredicted RBP12.36□□□□□ -0.43
TRAV35-201ENST00000390462 KDM2AQ9Y2K7 1162 aa12.34□□□□□ -0.43
TRAV35-201ENST00000390462 APLP2Q06481 763 aa12.29□□□□□ -0.44
TRAV35-201ENST00000390462 FBXO3Q9UK99 471 aa12.29□□□□□ -0.44
TRAV35-201ENST00000390462 ZNF219Q9P2Y4 722 aaPredicted RBP12.28□□□□□ -0.44
TRAV35-201ENST00000390462 GTF3C3Q9Y5Q9 886 aa12.24□□□□□ -0.45
TRAV35-201ENST00000390462 FBLN2P98095 1184 aa12.23□□□□□ -0.45
TRAV35-201ENST00000390462 ERICH6Q7L0X2 663 aa12.23□□□□□ -0.45
TRAV35-201ENST00000390462 POTEDQ86YR6 584 aa12.19□□□□□ -0.46
TRAV35-201ENST00000390462 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.17□□□□□ -0.46
TRAV35-201ENST00000390462 HOMEZQ8IX15 550 aa12.14□□□□□ -0.47
TRAV35-201ENST00000390462 BBXQ8WY36 941 aaPredicted RBP12.13□□□□□ -0.47
TRAV35-201ENST00000390462 PKD2Q13563 968 aa12.12□□□□□ -0.47
TRAV35-201ENST00000390462 VASPP50552 380 aaPredicted RBP12.1□□□□□ -0.47
TRAV35-201ENST00000390462 PAXIP1Q6ZW49 1069 aaPredicted RBP12.1□□□□□ -0.47
TRAV35-201ENST00000390462 CFAP44Q96MT7 982 aa12.06□□□□□ -0.48
TRAV35-201ENST00000390462 MKRN4PQ13434 485 aaPredicted RBP12.04□□□□□ -0.48
TRAV35-201ENST00000390462 IFNLR1Q8IU57 520 aaPredicted RBP12.04□□□□□ -0.48
TRAV35-201ENST00000390462 SPDYE4A6NLX3 237 aa12.02□□□□□ -0.49
TRAV35-201ENST00000390462 RNF39Q9H2S5 420 aa12.02□□□□□ -0.49
TRAV35-201ENST00000390462 SPINK5Q9NQ38 1064 aaPredicted RBP12.02□□□□□ -0.49
TRAV35-201ENST00000390462 TRHP20396 242 aaPredicted RBP12.01□□□□□ -0.49
TRAV35-201ENST00000390462 NPM1P06748 294 aaKnown RBP eCLIP11.97□□□□□ -0.49
TRAV35-201ENST00000390462 TMEM132AQ24JP5 1023 aa11.97□□□□□ -0.49
TRAV35-201ENST00000390462 NBR1Q14596 966 aa11.96□□□□□ -0.49
TRAV35-201ENST00000390462 TSHZ2Q9NRE2 1034 aa11.95□□□□□ -0.5
TRAV35-201ENST00000390462 CAPN15O75808 1086 aa11.93□□□□□ -0.5
TRAV35-201ENST00000390462 POLA2Q14181 598 aa11.93□□□□□ -0.5
TRAV35-201ENST00000390462 PROM2Q8N271 834 aa11.93□□□□□ -0.5
TRAV35-201ENST00000390462 SPRYD3Q8NCJ5 442 aa11.91□□□□□ -0.5
TRAV35-201ENST00000390462 C1QBPQ07021 282 aaKnown RBP11.9□□□□□ -0.5
TRAV35-201ENST00000390462 C14orf37Q86TY3 774 aa11.88□□□□□ -0.51
TRAV35-201ENST00000390462 ECM2O94769 699 aaPredicted RBP11.82□□□□□ -0.52
TRAV35-201ENST00000390462 DNAJC5Q9H3Z4 198 aa11.8□□□□□ -0.52
TRAV35-201ENST00000390462 ZBTB12Q9Y330 459 aaPredicted RBP11.8□□□□□ -0.52
TRAV35-201ENST00000390462 ABCB7O75027 752 aa11.76□□□□□ -0.53
TRAV35-201ENST00000390462 RANGAP1P46060 587 aaPredicted RBP11.75□□□□□ -0.53
TRAV35-201ENST00000390462 SPOCK2Q92563 424 aa11.69□□□□□ -0.54
TRAV35-201ENST00000390462 RGL2O15211 777 aa11.67□□□□□ -0.54
TRAV35-201ENST00000390462 PODXL2Q9NZ53 605 aa11.65□□□□□ -0.54
TRAV35-201ENST00000390462 DSG3P32926 999 aa11.62□□□□□ -0.55
TRAV35-201ENST00000390462 KLHL34Q8N239 644 aa11.62□□□□□ -0.55
TRAV35-201ENST00000390462 CHGAP10645 457 aaKnown RBP11.58□□□□□ -0.56
TRAV35-201ENST00000390462 ZNF692Q9BU19 519 aaPredicted RBP11.55□□□□□ -0.56
TRAV35-201ENST00000390462 SUPT5HO00267 1087 aaKnown RBP11.54□□□□□ -0.56
TRAV35-201ENST00000390462 SPDYE2BA6NHP3 402 aa11.53□□□□□ -0.56
TRAV35-201ENST00000390462 SPDYE6P0CI01 402 aa11.53□□□□□ -0.56
TRAV35-201ENST00000390462 SPDYE2Q495Y8 402 aa11.53□□□□□ -0.56
TRAV35-201ENST00000390462 OSCARQ8IYS5 282 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms