RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 DCAF8L2P0C7V8 631 aa21.7■■□□□ 1.06
CCDC88C-204ENST00000389857 PELP1Q8IZL8 1130 aaKnown RBP20.64■□□□□ 0.89
CCDC88C-204ENST00000389857 SUPT5HO00267 1087 aaKnown RBP20.5■□□□□ 0.87
CCDC88C-204ENST00000389857 APLP2Q06481 763 aa20.09■□□□□ 0.81
CCDC88C-204ENST00000389857 EHMT2Q96KQ7 1210 aa20.05■□□□□ 0.8
CCDC88C-204ENST00000389857 SHROOM4Q9ULL8 1493 aa19.98■□□□□ 0.79
CCDC88C-204ENST00000389857 FAM9AQ8IZU1 332 aaPredicted RBP19.98■□□□□ 0.79
CCDC88C-204ENST00000389857 NISCHQ9Y2I1 1504 aa19.85■□□□□ 0.77
CCDC88C-204ENST00000389857 ERICH6Q7L0X2 663 aa19.75■□□□□ 0.75
CCDC88C-204ENST00000389857 CCER1Q8TC90 406 aaPredicted RBP19.71■□□□□ 0.75
CCDC88C-204ENST00000389857 CENPBP07199 599 aaPredicted RBP19.5■□□□□ 0.71
CCDC88C-204ENST00000389857 TTBK1Q5TCY1 1321 aaPredicted RBP19.44■□□□□ 0.7
CCDC88C-204ENST00000389857 ZEB1P37275 1124 aaPredicted RBP19.36■□□□□ 0.69
CCDC88C-204ENST00000389857 PCGF6Q9BYE7 350 aa19.36■□□□□ 0.69
CCDC88C-204ENST00000389857 ATP1B4Q9UN42 357 aaPredicted RBP19.25■□□□□ 0.67
CCDC88C-204ENST00000389857 NEFLP07196 543 aa19.24■□□□□ 0.67
CCDC88C-204ENST00000389857 RANGAP1P46060 587 aaPredicted RBP19.22■□□□□ 0.67
CCDC88C-204ENST00000389857 MYT1Q01538 1121 aa19.1■□□□□ 0.65
CCDC88C-204ENST00000389857 TRIM41Q8WV44 630 aa19.06■□□□□ 0.64
CCDC88C-204ENST00000389857 UBTFP17480 764 aaKnown RBP18.99■□□□□ 0.63
CCDC88C-204ENST00000389857 DAXXQ9UER7 740 aaPredicted RBP18.89■□□□□ 0.61
CCDC88C-204ENST00000389857 YTHDC1Q96MU7 727 aaKnown RBP18.89■□□□□ 0.61
CCDC88C-204ENST00000389857 MYT1LQ9UL68 1186 aa18.69■□□□□ 0.58
CCDC88C-204ENST00000389857 POLR3GLQ9BT43 218 aa18.58■□□□□ 0.56
CCDC88C-204ENST00000389857 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.52■□□□□ 0.56
CCDC88C-204ENST00000389857 HNRNPUL2Q1KMD3 747 aaKnown RBP18.52■□□□□ 0.56
CCDC88C-204ENST00000389857 TRIM26Q12899 539 aaPredicted RBP18.49■□□□□ 0.55
CCDC88C-204ENST00000389857 PPARGC1BQ86YN6 1023 aaKnown RBP18.46■□□□□ 0.55
CCDC88C-204ENST00000389857 ITGAEP38570 1179 aa18.43■□□□□ 0.54
CCDC88C-204ENST00000389857 ZNF316A6NFI3 1004 aaPredicted RBP18.41■□□□□ 0.54
CCDC88C-204ENST00000389857 SLC4A1APQ9BWU0 796 aaKnown RBP18.38■□□□□ 0.53
CCDC88C-204ENST00000389857 RTL5Q5HYW3 569 aaPredicted RBP18.33■□□□□ 0.52
CCDC88C-204ENST00000389857 CLSPNQ9HAW4 1339 aa18.32■□□□□ 0.52
CCDC88C-204ENST00000389857 CHIC1Q5VXU3 224 aa18.28■□□□□ 0.52
CCDC88C-204ENST00000389857 CNGB1Q14028 1251 aaPredicted RBP18.27■□□□□ 0.52
CCDC88C-204ENST00000389857 HRCP23327 699 aa18.25■□□□□ 0.51
CCDC88C-204ENST00000389857 ZBTB47Q9UFB7 747 aaPredicted RBP18.06■□□□□ 0.48
CCDC88C-204ENST00000389857 FAM50AQ14320 339 aaKnown RBP17.98■□□□□ 0.47
CCDC88C-204ENST00000389857 DIEXFQ68CQ4 756 aaKnown RBP17.97■□□□□ 0.47
CCDC88C-204ENST00000389857 TRIM52Q96A61 297 aa17.97■□□□□ 0.47
CCDC88C-204ENST00000389857 LOC105371045A0A1W2PR82 267 aa17.9■□□□□ 0.46
CCDC88C-204ENST00000389857 CDK11AQ9UQ88 783 aaPredicted RBP17.86■□□□□ 0.45
CCDC88C-204ENST00000389857 ANP32CO43423 234 aa17.84■□□□□ 0.45
CCDC88C-204ENST00000389857 CANXP27824 592 aaKnown RBP17.83■□□□□ 0.44
CCDC88C-204ENST00000389857 NEUROD1Q13562 356 aa17.82■□□□□ 0.44
CCDC88C-204ENST00000389857 SLC24A1O60721 1099 aa17.81■□□□□ 0.44
CCDC88C-204ENST00000389857 NEFMP07197 916 aa17.81■□□□□ 0.44
CCDC88C-204ENST00000389857 ZNF326Q5BKZ1 582 aaKnown RBP17.75■□□□□ 0.43
CCDC88C-204ENST00000389857 BCANQ96GW7 911 aa17.72■□□□□ 0.43
CCDC88C-204ENST00000389857 BCL11AQ9H165 835 aa17.66■□□□□ 0.42
CCDC88C-204ENST00000389857 ANP32AP39687 249 aaKnown RBP17.62■□□□□ 0.41
CCDC88C-204ENST00000389857 ANP32BQ92688 251 aaKnown RBP17.59■□□□□ 0.41
CCDC88C-204ENST00000389857 GTF3C3Q9Y5Q9 886 aa17.57■□□□□ 0.4
CCDC88C-204ENST00000389857 FBLN2P98095 1184 aa17.54■□□□□ 0.4
CCDC88C-204ENST00000389857 HSP90AA1P07900 732 aaKnown RBP17.46■□□□□ 0.39
CCDC88C-204ENST00000389857 UPF2Q9HAU5 1272 aaKnown RBP17.43■□□□□ 0.38
CCDC88C-204ENST00000389857 NPM2Q86SE8 214 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-204ENST00000389857 ESF1Q9H501 851 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-204ENST00000389857 PABPN1Q86U42 306 aaKnown RBP eCLIP17.38■□□□□ 0.37
CCDC88C-204ENST00000389857 ZNF777Q9ULD5 760 aaPredicted RBP17.33■□□□□ 0.37
CCDC88C-204ENST00000389857 STAG3Q9UJ98 1225 aa17.32■□□□□ 0.36
CCDC88C-204ENST00000389857 ABCC9O60706 1549 aa17.31■□□□□ 0.36
CCDC88C-204ENST00000389857 GLIPR1L2Q4G1C9 344 aa17.3■□□□□ 0.36
CCDC88C-204ENST00000389857 EIF5BO60841 1220 aaKnown RBP17.28■□□□□ 0.36
CCDC88C-204ENST00000389857 ARID3CA6NKF2 412 aa17.26■□□□□ 0.35
CCDC88C-204ENST00000389857 P3H3Q8IVL6 736 aa17.26■□□□□ 0.35
CCDC88C-204ENST00000389857 TONSLQ96HA7 1378 aa17.24■□□□□ 0.35
CCDC88C-204ENST00000389857 ACIN1Q9UKV3 1341 aaKnown RBP17.23■□□□□ 0.35
CCDC88C-204ENST00000389857 CHGAP10645 457 aaKnown RBP17.23■□□□□ 0.35
CCDC88C-204ENST00000389857 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.22■□□□□ 0.35
CCDC88C-204ENST00000389857 CDK11BP21127 795 aaKnown RBP17.2■□□□□ 0.34
CCDC88C-204ENST00000389857 FKBP8Q14318 412 aa17.18■□□□□ 0.34
CCDC88C-204ENST00000389857 HNRNPUQ00839 825 aaKnown RBP eCLIP17.14■□□□□ 0.33
CCDC88C-204ENST00000389857 NPM1P06748 294 aaKnown RBP eCLIP17.13■□□□□ 0.33
CCDC88C-204ENST00000389857 WDR43Q15061 677 aaKnown RBP eCLIP17.12■□□□□ 0.33
CCDC88C-204ENST00000389857 FAM9BQ8IZU0 186 aa17.11■□□□□ 0.33
CCDC88C-204ENST00000389857 PLPPR3Q6T4P5 718 aa17.1■□□□□ 0.33
CCDC88C-204ENST00000389857 CSRNP3Q8WYN3 585 aa17.1■□□□□ 0.33
CCDC88C-204ENST00000389857 MYH16Q9H6N6 1097 aa17.1■□□□□ 0.33
CCDC88C-204ENST00000389857 TMC1Q8TDI8 760 aa17.08■□□□□ 0.33
CCDC88C-204ENST00000389857 CCDC136Q96JN2 1154 aa17.08■□□□□ 0.32
CCDC88C-204ENST00000389857 SALL2Q9Y467 1007 aaPredicted RBP17.03■□□□□ 0.32
CCDC88C-204ENST00000389857 SCAF1Q9H7N4 1312 aaKnown RBP17.01■□□□□ 0.31
CCDC88C-204ENST00000389857 NBR1Q14596 966 aa16.99■□□□□ 0.31
CCDC88C-204ENST00000389857 NCLP19338 710 aaKnown RBP16.98■□□□□ 0.31
CCDC88C-204ENST00000389857 DDX10Q13206 875 aaKnown RBP16.98■□□□□ 0.31
CCDC88C-204ENST00000389857 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.98■□□□□ 0.318e-7■■■■□ 20.2
CCDC88C-204ENST00000389857 ARXQ96QS3 562 aa16.98■□□□□ 0.31
CCDC88C-204ENST00000389857 BECN1Q14457 450 aa16.94■□□□□ 0.3
CCDC88C-204ENST00000389857 DDRGK1Q96HY6 314 aa16.93■□□□□ 0.3
CCDC88C-204ENST00000389857 A0A0G2JS52 829 aa16.93■□□□□ 0.3
CCDC88C-204ENST00000389857 ANP32EQ9BTT0 268 aa16.92■□□□□ 0.3
CCDC88C-204ENST00000389857 MRS2Q9HD23 443 aa16.9■□□□□ 0.3
CCDC88C-204ENST00000389857 GOLGA6L22H0YM25 854 aa16.89■□□□□ 0.29
CCDC88C-204ENST00000389857 TRIM44Q96DX7 344 aaPredicted RBP16.89■□□□□ 0.29
CCDC88C-204ENST00000389857 TSPY4P0CV99 314 aa16.89■□□□□ 0.29
CCDC88C-204ENST00000389857 TSPY10P0CW01 314 aa16.89■□□□□ 0.29
CCDC88C-204ENST00000389857 KDM2AQ9Y2K7 1162 aa16.87■□□□□ 0.29
CCDC88C-204ENST00000389857 CHIC2Q9UKJ5 165 aa16.86■□□□□ 0.29
CCDC88C-204ENST00000389857 ZRSR1Q15695 479 aaKnown RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms