RNA–Protein interactions for RNA: ENST00000384709.1

RNU6-541P-201, Transcript of RNA, U6 small nuclear 541, pseudogene, humanhuman

BASIC

Gene RNU6-541P, Length 110 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-541P-201ENST00000384709 AEBP2Q6ZN18 517 aaPredicted RBP14.55□□□□□ -0.08
RNU6-541P-201ENST00000384709 CHIC1Q5VXU3 224 aa13.5□□□□□ -0.25
RNU6-541P-201ENST00000384709 POTEDQ86YR6 584 aa13.18□□□□□ -0.3
RNU6-541P-201ENST00000384709 SENP3Q9H4L4 574 aaPredicted RBP12.51□□□□□ -0.41
RNU6-541P-201ENST00000384709 PHF23Q9BUL5 403 aaPredicted RBP12.25□□□□□ -0.45
RNU6-541P-201ENST00000384709 FOXD1Q16676 465 aa11.87□□□□□ -0.51
RNU6-541P-201ENST00000384709 MSH5O43196 834 aa11.46□□□□□ -0.57
RNU6-541P-201ENST00000384709 PLPPR3Q6T4P5 718 aa10.92□□□□□ -0.66
RNU6-541P-201ENST00000384709 PIAS4Q8N2W9 510 aaPredicted RBP10.77□□□□□ -0.69
RNU6-541P-201ENST00000384709 CACNB1Q02641 598 aaPredicted RBP10.57□□□□□ -0.72
RNU6-541P-201ENST00000384709 PPP6R1Q9UPN7 881 aa10.45□□□□□ -0.74
RNU6-541P-201ENST00000384709 ADRA2BP18089 450 aa10.39□□□□□ -0.75
RNU6-541P-201ENST00000384709 POTEHQ6S545 545 aa10.08□□□□□ -0.8
RNU6-541P-201ENST00000384709 DMRT2Q9Y5R5 561 aa9.76□□□□□ -0.85
RNU6-541P-201ENST00000384709 RNF39Q9H2S5 420 aa9.71□□□□□ -0.86
RNU6-541P-201ENST00000384709 MAPK8IP2Q13387 824 aaPredicted RBP9.69□□□□□ -0.86
RNU6-541P-201ENST00000384709 PPP4R3CPQ6ZMV5 832 aa9.6□□□□□ -0.87
RNU6-541P-201ENST00000384709 SCAF1Q9H7N4 1312 aaKnown RBP9.55□□□□□ -0.88
RNU6-541P-201ENST00000384709 C1QBPQ07021 282 aaKnown RBP9.48□□□□□ -0.89
RNU6-541P-201ENST00000384709 DCAF8L1A6NGE4 600 aa9.45□□□□□ -0.9
RNU6-541P-201ENST00000384709 CNKSR2Q8WXI2 1034 aa9.37□□□□□ -0.91
RNU6-541P-201ENST00000384709 NCBP3Q53F19 620 aaKnown RBP9.32□□□□□ -0.92
RNU6-541P-201ENST00000384709 KCNA4P22459 653 aa9.3□□□□□ -0.92
RNU6-541P-201ENST00000384709 HOXD11P31277 338 aaPredicted RBP9.22□□□□□ -0.93
RNU6-541P-201ENST00000384709 RNF216Q9NWF9 866 aaPredicted RBP9.21□□□□□ -0.94
RNU6-541P-201ENST00000384709 NPM3O75607 178 aaKnown RBP9.2□□□□□ -0.94
RNU6-541P-201ENST00000384709 DNAJC5BQ9UF47 199 aa9.14□□□□□ -0.95
RNU6-541P-201ENST00000384709 SP7Q8TDD2 431 aaPredicted RBP8.91□□□□□ -0.98
RNU6-541P-201ENST00000384709 SLC4A1APQ9BWU0 796 aaKnown RBP8.84□□□□□ -0.99
RNU6-541P-201ENST00000384709 PLSCR2Q9NRY7 297 aa8.82□□□□□ -1
RNU6-541P-201ENST00000384709 SLC4A2P04920 1241 aa8.73□□□□□ -1.01
RNU6-541P-201ENST00000384709 DSG3P32926 999 aa8.73□□□□□ -1.01
RNU6-541P-201ENST00000384709 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.64□□□□□ -1.03
RNU6-541P-201ENST00000384709 CHRDL2Q6WN34 429 aa8.61□□□□□ -1.03
RNU6-541P-201ENST00000384709 FOXD4L1Q9NU39 408 aa8.61□□□□□ -1.03
RNU6-541P-201ENST00000384709 ZBTB22O15209 634 aa8.59□□□□□ -1.03
RNU6-541P-201ENST00000384709 U3KPZ7 1027 aaPredicted RBP8.58□□□□□ -1.04
RNU6-541P-201ENST00000384709 MYCNP04198 464 aaPredicted RBP8.51□□□□□ -1.05
RNU6-541P-201ENST00000384709 CSRNP3Q8WYN3 585 aa8.51□□□□□ -1.05
RNU6-541P-201ENST00000384709 CAPN15O75808 1086 aa8.5□□□□□ -1.05
RNU6-541P-201ENST00000384709 SPINK5Q9NQ38 1064 aaPredicted RBP8.5□□□□□ -1.05
RNU6-541P-201ENST00000384709 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.45□□□□□ -1.06
RNU6-541P-201ENST00000384709 HNRNPUL2Q1KMD3 747 aaKnown RBP8.45□□□□□ -1.06
RNU6-541P-201ENST00000384709 EHMT2Q96KQ7 1210 aa8.44□□□□□ -1.06
RNU6-541P-201ENST00000384709 SAMD1Q6SPF0 538 aaPredicted RBP8.41□□□□□ -1.06
RNU6-541P-201ENST00000384709 ATXN8OSP0DMR3 200 aa8.37□□□□□ -1.07
RNU6-541P-201ENST00000384709 APLP2Q06481 763 aa8.37□□□□□ -1.07
RNU6-541P-201ENST00000384709 LHX8Q68G74 356 aa8.37□□□□□ -1.07
RNU6-541P-201ENST00000384709 HAX1O00165 279 aa8.35□□□□□ -1.07
RNU6-541P-201ENST00000384709 RBM42Q9BTD8 480 aaKnown RBP8.3□□□□□ -1.08
RNU6-541P-201ENST00000384709 ATF5Q9Y2D1 282 aaPredicted RBP8.27□□□□□ -1.09
RNU6-541P-201ENST00000384709 ZNF219Q9P2Y4 722 aaPredicted RBP8.26□□□□□ -1.09
RNU6-541P-201ENST00000384709 ABCB7O75027 752 aa8.23□□□□□ -1.09
RNU6-541P-201ENST00000384709 EVX2Q03828 476 aa8.21□□□□□ -1.1
RNU6-541P-201ENST00000384709 PIP4P2Q8N4L2 257 aa8.17□□□□□ -1.1
RNU6-541P-201ENST00000384709 TRHP20396 242 aaPredicted RBP8.16□□□□□ -1.1
RNU6-541P-201ENST00000384709 POLA2Q14181 598 aa8.07□□□□□ -1.12
RNU6-541P-201ENST00000384709 ZBTB12Q9Y330 459 aaPredicted RBP7.98□□□□□ -1.13
RNU6-541P-201ENST00000384709 POTEMA6NI47 508 aa7.94□□□□□ -1.14
RNU6-541P-201ENST00000384709 FXR2P51116 673 aaKnown RBP eCLIP7.94□□□□□ -1.14
RNU6-541P-201ENST00000384709 MKRN4PQ13434 485 aaPredicted RBP7.93□□□□□ -1.14
RNU6-541P-201ENST00000384709 GABBR2O75899 941 aa7.91□□□□□ -1.14
RNU6-541P-201ENST00000384709 AKT1S1Q96B36 256 aa7.89□□□□□ -1.15
RNU6-541P-201ENST00000384709 FBLN2P98095 1184 aa7.88□□□□□ -1.15
RNU6-541P-201ENST00000384709 POTEGQ6S5H5 508 aa7.87□□□□□ -1.15
RNU6-541P-201ENST00000384709 REM2Q8IYK8 340 aaPredicted RBP7.86□□□□□ -1.15
RNU6-541P-201ENST00000384709 PCDH10Q9P2E7 1040 aa7.81□□□□□ -1.16
RNU6-541P-201ENST00000384709 SPDYE2BA6NHP3 402 aa7.79□□□□□ -1.16
RNU6-541P-201ENST00000384709 SPDYE6P0CI01 402 aa7.79□□□□□ -1.16
RNU6-541P-201ENST00000384709 SPDYE2Q495Y8 402 aa7.79□□□□□ -1.16
RNU6-541P-201ENST00000384709 OSCARQ8IYS5 282 aa7.79□□□□□ -1.16
RNU6-541P-201ENST00000384709 PITPNM1O00562 1244 aa7.78□□□□□ -1.16
RNU6-541P-201ENST00000384709 POTEIP0CG38 1075 aa7.76□□□□□ -1.17
RNU6-541P-201ENST00000384709 SSUH2Q9Y2M2 353 aa7.74□□□□□ -1.17
RNU6-541P-201ENST00000384709 C19orf67A6NJJ6 358 aa7.72□□□□□ -1.17
RNU6-541P-201ENST00000384709 PROM2Q8N271 834 aa7.69□□□□□ -1.18
RNU6-541P-201ENST00000384709 SPDYE4A6NLX3 237 aa7.68□□□□□ -1.18
RNU6-541P-201ENST00000384709 ZNF692Q9BU19 519 aaPredicted RBP7.68□□□□□ -1.18
RNU6-541P-201ENST00000384709 OTUD5Q96G74 571 aa7.67□□□□□ -1.18
RNU6-541P-201ENST00000384709 FKBP8Q14318 412 aa7.61□□□□□ -1.19
RNU6-541P-201ENST00000384709 PRKAR2AP13861 404 aaKnown RBP7.57□□□□□ -1.2
RNU6-541P-201ENST00000384709 PABPN1Q86U42 306 aaKnown RBP eCLIP7.57□□□□□ -1.2
RNU6-541P-201ENST00000384709 SPDYE1Q8NFV5 336 aaPredicted RBP7.52□□□□□ -1.21
RNU6-541P-201ENST00000384709 STAG3Q9UJ98 1225 aa7.5□□□□□ -1.21
RNU6-541P-201ENST00000384709 POTEB2H3BUK9 544 aa7.49□□□□□ -1.21
RNU6-541P-201ENST00000384709 LCE2DQ5TA82 110 aaPredicted RBP7.44□□□□□ -1.22
RNU6-541P-201ENST00000384709 DCBLD2Q96PD2 775 aa7.43□□□□□ -1.22
RNU6-541P-201ENST00000384709 FBXO3Q9UK99 471 aa7.4□□□□□ -1.22
RNU6-541P-201ENST00000384709 CLEC11AQ9Y240 323 aa7.4□□□□□ -1.22
RNU6-541P-201ENST00000384709 PRR29P0C7W0 189 aa7.39□□□□□ -1.23
RNU6-541P-201ENST00000384709 FAM163AQ96GL9 167 aaPredicted RBP7.37□□□□□ -1.23
RNU6-541P-201ENST00000384709 CREBZFQ9NS37 354 aa7.35□□□□□ -1.23
RNU6-541P-201ENST00000384709 CDAN1Q8IWY9 1227 aa7.33□□□□□ -1.24
RNU6-541P-201ENST00000384709 MNX1P50219 401 aaPredicted RBP7.31□□□□□ -1.24
RNU6-541P-201ENST00000384709 VASPP50552 380 aaPredicted RBP7.3□□□□□ -1.24
RNU6-541P-201ENST00000384709 CLCN6P51797 869 aa7.3□□□□□ -1.24
RNU6-541P-201ENST00000384709 MMRN1Q13201 1228 aa7.28□□□□□ -1.24
RNU6-541P-201ENST00000384709 CHADLQ6NUI6 762 aa7.28□□□□□ -1.24
RNU6-541P-201ENST00000384709 CD44P16070 742 aaKnown RBP7.25□□□□□ -1.25
RNU6-541P-201ENST00000384709 MIER1Q8N108 512 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms