RNA–Protein interactions for RNA: ENST00000381431.9

SGCB-201, Transcript of sarcoglycan beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SGCB, Length 4,431 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCB-201ENST00000381431 DCAF8L2P0C7V8 631 aa30.03■■■□□ 2.4
SGCB-201ENST00000381431 NISCHQ9Y2I1 1504 aa29.51■■■□□ 2.32
SGCB-201ENST00000381431 SUPT5HO00267 1087 aaKnown RBP29.01■■■□□ 2.23
SGCB-201ENST00000381431 SHROOM4Q9ULL8 1493 aa28.61■■■□□ 2.17
SGCB-201ENST00000381431 EHMT2Q96KQ7 1210 aa27.92■■■□□ 2.06
SGCB-201ENST00000381431 FAM9AQ8IZU1 332 aaPredicted RBP27.31■■□□□ 1.96
SGCB-201ENST00000381431 PCGF6Q9BYE7 350 aa27.27■■□□□ 1.96
SGCB-201ENST00000381431 TTBK1Q5TCY1 1321 aaPredicted RBP26.96■■□□□ 1.91
SGCB-201ENST00000381431 APLP2Q06481 763 aa26.76■■□□□ 1.88
SGCB-201ENST00000381431 TRIM41Q8WV44 630 aa26.71■■□□□ 1.87
SGCB-201ENST00000381431 RANGAP1P46060 587 aaPredicted RBP26.53■■□□□ 1.84
SGCB-201ENST00000381431 CCER1Q8TC90 406 aaPredicted RBP26.37■■□□□ 1.81
SGCB-201ENST00000381431 PPARGC1BQ86YN6 1023 aaKnown RBP26.3■■□□□ 1.8
SGCB-201ENST00000381431 PELP1Q8IZL8 1130 aaKnown RBP26.27■■□□□ 1.8
SGCB-201ENST00000381431 ZEB1P37275 1124 aaPredicted RBP26.26■■□□□ 1.79
SGCB-201ENST00000381431 UBTFP17480 764 aaKnown RBP26.23■■□□□ 1.79
SGCB-201ENST00000381431 LOC105371045A0A1W2PR82 267 aa26.18■■□□□ 1.78
SGCB-201ENST00000381431 CHIC1Q5VXU3 224 aa26.16■■□□□ 1.78
SGCB-201ENST00000381431 CENPBP07199 599 aaPredicted RBP26.05■■□□□ 1.76
SGCB-201ENST00000381431 HRCP23327 699 aa26■■□□□ 1.75
SGCB-201ENST00000381431 ATP1B4Q9UN42 357 aaPredicted RBP26■■□□□ 1.75
SGCB-201ENST00000381431 TRIM26Q12899 539 aaPredicted RBP25.98■■□□□ 1.75
SGCB-201ENST00000381431 YTHDC1Q96MU7 727 aaKnown RBP25.83■■□□□ 1.73
SGCB-201ENST00000381431 ITGAEP38570 1179 aa25.47■■□□□ 1.67
SGCB-201ENST00000381431 HNRNPUL2Q1KMD3 747 aaKnown RBP25.47■■□□□ 1.67
SGCB-201ENST00000381431 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.4■■□□□ 1.66
SGCB-201ENST00000381431 ERICH6Q7L0X2 663 aa25.28■■□□□ 1.64
SGCB-201ENST00000381431 NEFLP07196 543 aa25.27■■□□□ 1.64
SGCB-201ENST00000381431 PABPN1Q86U42 306 aaKnown RBP eCLIP25.08■■□□□ 1.61
SGCB-201ENST00000381431 ABCC9O60706 1549 aa25.08■■□□□ 1.61
SGCB-201ENST00000381431 DIEXFQ68CQ4 756 aaKnown RBP25.05■■□□□ 1.6
SGCB-201ENST00000381431 POLR3GLQ9BT43 218 aa24.93■■□□□ 1.58
SGCB-201ENST00000381431 CNGB1Q14028 1251 aaPredicted RBP24.92■■□□□ 1.58
SGCB-201ENST00000381431 FAM50AQ14320 339 aaKnown RBP24.73■■□□□ 1.55
SGCB-201ENST00000381431 MYT1Q01538 1121 aa24.64■■□□□ 1.53
SGCB-201ENST00000381431 GTF3C3Q9Y5Q9 886 aa24.63■■□□□ 1.53
SGCB-201ENST00000381431 NEUROD1Q13562 356 aa24.63■■□□□ 1.53
SGCB-201ENST00000381431 MYT1LQ9UL68 1186 aa24.59■■□□□ 1.53
SGCB-201ENST00000381431 CSRNP3Q8WYN3 585 aa24.58■■□□□ 1.53
SGCB-201ENST00000381431 ZNF316A6NFI3 1004 aaPredicted RBP24.48■■□□□ 1.51
SGCB-201ENST00000381431 ZCCHC6Q5VYS8 1495 aaKnown RBP24.48■■□□□ 1.51
SGCB-201ENST00000381431 TRIM52Q96A61 297 aa24.45■■□□□ 1.51
SGCB-201ENST00000381431 BCANQ96GW7 911 aa24.42■■□□□ 1.5
SGCB-201ENST00000381431 P3H3Q8IVL6 736 aa24.39■■□□□ 1.49
SGCB-201ENST00000381431 ACIN1Q9UKV3 1341 aaKnown RBP24.32■■□□□ 1.48
SGCB-201ENST00000381431 DCAF1Q9Y4B6 1507 aa24.25■■□□□ 1.47
SGCB-201ENST00000381431 DAXXQ9UER7 740 aaPredicted RBP24.25■■□□□ 1.47
SGCB-201ENST00000381431 SCRIBQ14160 1630 aa24.24■■□□□ 1.47
SGCB-201ENST00000381431 ZNF326Q5BKZ1 582 aaKnown RBP24.23■■□□□ 1.47
SGCB-201ENST00000381431 ARID3CA6NKF2 412 aa24.21■■□□□ 1.47
SGCB-201ENST00000381431 MYO15BQ96JP2 1530 aa24.21■■□□□ 1.47
SGCB-201ENST00000381431 ANP32CO43423 234 aa24.21■■□□□ 1.47
SGCB-201ENST00000381431 SLC4A1APQ9BWU0 796 aaKnown RBP24.17■■□□□ 1.46
SGCB-201ENST00000381431 FBLN2P98095 1184 aa24.11■■□□□ 1.45
SGCB-201ENST00000381431 CLSPNQ9HAW4 1339 aa23.96■■□□□ 1.43
SGCB-201ENST00000381431 RTL5Q5HYW3 569 aaPredicted RBP23.89■■□□□ 1.42
SGCB-201ENST00000381431 DDX10Q13206 875 aaKnown RBP23.89■■□□□ 1.41
SGCB-201ENST00000381431 RSF1Q96T23 1441 aaPredicted RBP23.88■■□□□ 1.41
SGCB-201ENST00000381431 ZNF777Q9ULD5 760 aaPredicted RBP23.86■■□□□ 1.41
SGCB-201ENST00000381431 CDK11AQ9UQ88 783 aaPredicted RBP23.86■■□□□ 1.41
SGCB-201ENST00000381431 SCAF1Q9H7N4 1312 aaKnown RBP23.82■■□□□ 1.4
SGCB-201ENST00000381431 MIER1Q8N108 512 aa23.79■■□□□ 1.4
SGCB-201ENST00000381431 FKBP8Q14318 412 aa23.77■■□□□ 1.4
SGCB-201ENST00000381431 CCDC180Q9P1Z9 1646 aa23.74■■□□□ 1.39
SGCB-201ENST00000381431 TONSLQ96HA7 1378 aa23.74■■□□□ 1.39
SGCB-201ENST00000381431 CHIC2Q9UKJ5 165 aa23.71■■□□□ 1.39
SGCB-201ENST00000381431 HIRIP3Q9BW71 556 aaPredicted RBP23.71■■□□□ 1.39
SGCB-201ENST00000381431 CLIP1P30622 1438 aa23.68■■□□□ 1.38
SGCB-201ENST00000381431 HNRNPUQ00839 825 aaKnown RBP eCLIP23.68■■□□□ 1.38
SGCB-201ENST00000381431 FAM9BQ8IZU0 186 aa23.62■■□□□ 1.37
SGCB-201ENST00000381431 CEP162Q5TB80 1403 aa23.61■■□□□ 1.37
SGCB-201ENST00000381431 SALL2Q9Y467 1007 aaPredicted RBP23.52■■□□□ 1.36
SGCB-201ENST00000381431 BCL11AQ9H165 835 aa23.51■■□□□ 1.35
SGCB-201ENST00000381431 NPM2Q86SE8 214 aaKnown RBP23.46■■□□□ 1.35
SGCB-201ENST00000381431 CANXP27824 592 aaKnown RBP23.45■■□□□ 1.34
SGCB-201ENST00000381431 MTUS2Q5JR59 1369 aa23.45■■□□□ 1.34
SGCB-201ENST00000381431 WRNQ14191 1432 aaPredicted RBP eCLIP23.43■■□□□ 1.34
SGCB-201ENST00000381431 GOLGA3Q08378 1498 aa23.42■■□□□ 1.34
SGCB-201ENST00000381431 CECR2Q9BXF3 1484 aa23.41■■□□□ 1.34
SGCB-201ENST00000381431 IRX6P78412 446 aaPredicted RBP23.41■■□□□ 1.34
SGCB-201ENST00000381431 RRP7BPQ9NSQ0 103 aa23.4■■□□□ 1.34
SGCB-201ENST00000381431 EEA1Q15075 1411 aa23.39■■□□□ 1.34
SGCB-201ENST00000381431 ANP32AP39687 249 aaKnown RBP23.39■■□□□ 1.33
SGCB-201ENST00000381431 TNIKQ9UKE5 1360 aa23.38■■□□□ 1.33
SGCB-201ENST00000381431 MRS2Q9HD23 443 aa23.37■■□□□ 1.33
SGCB-201ENST00000381431 KDM2AQ9Y2K7 1162 aa23.36■■□□□ 1.33
SGCB-201ENST00000381431 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.35■■□□□ 1.33
SGCB-201ENST00000381431 TMC1Q8TDI8 760 aa23.33■■□□□ 1.33
SGCB-201ENST00000381431 CHGAP10645 457 aaKnown RBP23.32■■□□□ 1.32
SGCB-201ENST00000381431 ZBTB47Q9UFB7 747 aaPredicted RBP23.26■■□□□ 1.31
SGCB-201ENST00000381431 SENP3-EIF4A1A0A087X0R7 540 aa23.26■■□□□ 1.31
SGCB-201ENST00000381431 RB1CC1Q8TDY2 1594 aa23.25■■□□□ 1.31
SGCB-201ENST00000381431 TSPY4P0CV99 314 aa23.25■■□□□ 1.31
SGCB-201ENST00000381431 TSPY10P0CW01 314 aa23.25■■□□□ 1.31
SGCB-201ENST00000381431 SIN3AQ96ST3 1273 aa23.25■■□□□ 1.31
SGCB-201ENST00000381431 CCDC136Q96JN2 1154 aa23.24■■□□□ 1.31
SGCB-201ENST00000381431 SOGA1O94964 1423 aa23.24■■□□□ 1.31
SGCB-201ENST00000381431 EIF4G2P78344 907 aaKnown RBP eCLIP23.24■■□□□ 1.31
SGCB-201ENST00000381431 SLC24A1O60721 1099 aa23.23■■□□□ 1.31
SGCB-201ENST00000381431 NEFMP07197 916 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms