RNA–Protein interactions for RNA: ENST00000380071.7

RFC3-201, Transcript of replication factor C subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFC3, Length 2,402 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3-201ENST00000380071 NISCHQ9Y2I1 1504 aa25.28■■□□□ 1.64
RFC3-201ENST00000380071 SHROOM4Q9ULL8 1493 aa21.61■■□□□ 1.05
RFC3-201ENST00000380071 CCDC180Q9P1Z9 1646 aa21.44■■□□□ 1.02
RFC3-201ENST00000380071 ZCCHC6Q5VYS8 1495 aaKnown RBP21.36■■□□□ 1.01
RFC3-201ENST00000380071 SUPT5HO00267 1087 aaKnown RBP21.19■□□□□ 0.98
RFC3-201ENST00000380071 DCAF8L2P0C7V8 631 aa21.05■□□□□ 0.96
RFC3-201ENST00000380071 DCAF1Q9Y4B6 1507 aa20.7■□□□□ 0.9
RFC3-201ENST00000380071 CHIC1Q5VXU3 224 aa20.58■□□□□ 0.89
RFC3-201ENST00000380071 MYO15BQ96JP2 1530 aa20.5■□□□□ 0.87
RFC3-201ENST00000380071 SCRIBQ14160 1630 aa20.15■□□□□ 0.82
RFC3-201ENST00000380071 ABCC9O60706 1549 aa20.13■□□□□ 0.81
RFC3-201ENST00000380071 LOC105371045A0A1W2PR82 267 aa20.02■□□□□ 0.8
RFC3-201ENST00000380071 RSF1Q96T23 1441 aaPredicted RBP20.02■□□□□ 0.79
RFC3-201ENST00000380071 PCGF6Q9BYE7 350 aa19.95■□□□□ 0.78
RFC3-201ENST00000380071 HRCP23327 699 aa19.91■□□□□ 0.78
RFC3-201ENST00000380071 NACADO15069 1562 aa19.85■□□□□ 0.77
RFC3-201ENST00000380071 RB1CC1Q8TDY2 1594 aa19.79■□□□□ 0.76
RFC3-201ENST00000380071 CECR2Q9BXF3 1484 aa19.76■□□□□ 0.75
RFC3-201ENST00000380071 TRIM41Q8WV44 630 aa19.72■□□□□ 0.75
RFC3-201ENST00000380071 MROH2BQ7Z745 1585 aa19.67■□□□□ 0.74
RFC3-201ENST00000380071 FAM9AQ8IZU1 332 aaPredicted RBP19.59■□□□□ 0.73
RFC3-201ENST00000380071 WIZO95785 1651 aa19.57■□□□□ 0.72
RFC3-201ENST00000380071 PPARGC1BQ86YN6 1023 aaKnown RBP19.55■□□□□ 0.72
RFC3-201ENST00000380071 TRIM26Q12899 539 aaPredicted RBP19.54■□□□□ 0.72
RFC3-201ENST00000380071 EHMT2Q96KQ7 1210 aa19.45■□□□□ 0.7
RFC3-201ENST00000380071 BAZ1AQ9NRL2 1556 aaPredicted RBP19.39■□□□□ 0.69
RFC3-201ENST00000380071 UNC13AQ9UPW8 1703 aa19.27■□□□□ 0.68
RFC3-201ENST00000380071 EIF4G1Q04637 1599 aaKnown RBP19.26■□□□□ 0.67
RFC3-201ENST00000380071 SMARCA4P51532 1647 aa19.24■□□□□ 0.67
RFC3-201ENST00000380071 TOP2AP11388 1531 aaKnown RBP19.22■□□□□ 0.67
RFC3-201ENST00000380071 CCDC88BA6NC98 1476 aa19.19■□□□□ 0.66
RFC3-201ENST00000380071 SMARCA2P51531 1590 aa19.13■□□□□ 0.65
RFC3-201ENST00000380071 ABCC8Q09428 1581 aa19.13■□□□□ 0.65
RFC3-201ENST00000380071 PABPN1Q86U42 306 aaKnown RBP eCLIP19.13■□□□□ 0.65
RFC3-201ENST00000380071 ZEB1P37275 1124 aaPredicted RBP19.06■□□□□ 0.64
RFC3-201ENST00000380071 BICRAQ9NZM4 1560 aa19.03■□□□□ 0.64
RFC3-201ENST00000380071 SOGA1O94964 1423 aa18.97■□□□□ 0.63
RFC3-201ENST00000380071 RUSC2Q8N2Y8 1516 aa18.89■□□□□ 0.62
RFC3-201ENST00000380071 PEG3Q9GZU2 1588 aa18.86■□□□□ 0.61
RFC3-201ENST00000380071 CSRNP3Q8WYN3 585 aa18.85■□□□□ 0.61
RFC3-201ENST00000380071 CEP162Q5TB80 1403 aa18.84■□□□□ 0.61
RFC3-201ENST00000380071 TNIKQ9UKE5 1360 aa18.81■□□□□ 0.6
RFC3-201ENST00000380071 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.8■□□□□ 0.6
RFC3-201ENST00000380071 TTBK1Q5TCY1 1321 aaPredicted RBP18.8■□□□□ 0.6
RFC3-201ENST00000380071 WRNQ14191 1432 aaPredicted RBP eCLIP18.79■□□□□ 0.6
RFC3-201ENST00000380071 EEA1Q15075 1411 aa18.79■□□□□ 0.6
RFC3-201ENST00000380071 UBTFP17480 764 aaKnown RBP18.79■□□□□ 0.6
RFC3-201ENST00000380071 ATAD2BQ9ULI0 1458 aa18.77■□□□□ 0.6
RFC3-201ENST00000380071 CCER1Q8TC90 406 aaPredicted RBP18.72■□□□□ 0.59
RFC3-201ENST00000380071 SYNJ1O43426 1573 aa18.7■□□□□ 0.58
RFC3-201ENST00000380071 BAZ1BQ9UIG0 1483 aaKnown RBP18.7■□□□□ 0.58
RFC3-201ENST00000380071 GOLGA3Q08378 1498 aa18.68■□□□□ 0.58
RFC3-201ENST00000380071 CEP164Q9UPV0 1460 aa18.58■□□□□ 0.56
RFC3-201ENST00000380071 KIF21BO75037 1637 aa18.54■□□□□ 0.56
RFC3-201ENST00000380071 RAPGEF2Q9Y4G8 1499 aa18.49■□□□□ 0.55
RFC3-201ENST00000380071 CLIP1P30622 1438 aa18.49■□□□□ 0.55
RFC3-201ENST00000380071 RANGAP1P46060 587 aaPredicted RBP18.45■□□□□ 0.54
RFC3-201ENST00000380071 TOP2BQ02880 1626 aa18.45■□□□□ 0.54
RFC3-201ENST00000380071 VPS8Q8N3P4 1428 aa18.4■□□□□ 0.54
RFC3-201ENST00000380071 NCAPD3P42695 1498 aa18.4■□□□□ 0.54
RFC3-201ENST00000380071 SCAF1Q9H7N4 1312 aaKnown RBP18.38■□□□□ 0.53
RFC3-201ENST00000380071 HNRNPUL2Q1KMD3 747 aaKnown RBP18.38■□□□□ 0.53
RFC3-201ENST00000380071 BIVM-ERCC5R4GMW8 1640 aa18.37■□□□□ 0.53
RFC3-201ENST00000380071 HMGXB3Q12766 1538 aa18.35■□□□□ 0.53
RFC3-201ENST00000380071 DIEXFQ68CQ4 756 aaKnown RBP18.34■□□□□ 0.53
RFC3-201ENST00000380071 APLP2Q06481 763 aa18.33■□□□□ 0.52
RFC3-201ENST00000380071 CUX1P39880 1505 aa18.3■□□□□ 0.52
RFC3-201ENST00000380071 PRXQ9BXM0 1461 aa18.29■□□□□ 0.52
RFC3-201ENST00000380071 CFTRP13569 1480 aa18.25■□□□□ 0.51
RFC3-201ENST00000380071 ERICH3Q5RHP9 1530 aa18.24■□□□□ 0.51
RFC3-201ENST00000380071 ZNF316A6NFI3 1004 aaPredicted RBP18.21■□□□□ 0.51
RFC3-201ENST00000380071 ARAP1Q96P48 1450 aa18.2■□□□□ 0.5
RFC3-201ENST00000380071 KIF27Q86VH2 1401 aa18.2■□□□□ 0.5
RFC3-201ENST00000380071 NEUROD1Q13562 356 aa18.18■□□□□ 0.5
RFC3-201ENST00000380071 ACIN1Q9UKV3 1341 aaKnown RBP18.17■□□□□ 0.5
RFC3-201ENST00000380071 KANK4Q5T7N3 995 aaPredicted RBP18.16■□□□□ 0.5
RFC3-201ENST00000380071 PELP1Q8IZL8 1130 aaKnown RBP18.06■□□□□ 0.48
RFC3-201ENST00000380071 CADPSQ9ULU8 1353 aa18.06■□□□□ 0.48
RFC3-201ENST00000380071 ARHGAP35Q9NRY4 1499 aa18.05■□□□□ 0.48
RFC3-201ENST00000380071 IGF1RP08069 1367 aa18.05■□□□□ 0.48
RFC3-201ENST00000380071 PRDM2Q13029 1718 aa18.05■□□□□ 0.48
RFC3-201ENST00000380071 CUX2O14529 1486 aa18.04■□□□□ 0.48
RFC3-201ENST00000380071 CENPBP07199 599 aaPredicted RBP18.03■□□□□ 0.48
RFC3-201ENST00000380071 DHX57Q6P158 1386 aaKnown RBP17.99■□□□□ 0.47
RFC3-201ENST00000380071 MIER1Q8N108 512 aa17.98■□□□□ 0.47
RFC3-201ENST00000380071 RRBP1Q9P2E9 1410 aaKnown RBP17.98■□□□□ 0.47
RFC3-201ENST00000380071 FGD5Q6ZNL6 1462 aa17.97■□□□□ 0.47
RFC3-201ENST00000380071 GTF3C3Q9Y5Q9 886 aa17.97■□□□□ 0.47
RFC3-201ENST00000380071 CARMIL1Q5VZK9 1371 aa17.96■□□□□ 0.47
RFC3-201ENST00000380071 CC2D2AQ9P2K1 1620 aa17.95■□□□□ 0.46
RFC3-201ENST00000380071 YTHDC1Q96MU7 727 aaKnown RBP17.92■□□□□ 0.46
RFC3-201ENST00000380071 CLSPNQ9HAW4 1339 aa17.92■□□□□ 0.46
RFC3-201ENST00000380071 CCNB3Q8WWL7 1395 aa17.91■□□□□ 0.46
RFC3-201ENST00000380071 ITGAEP38570 1179 aa17.9■□□□□ 0.46
RFC3-201ENST00000380071 FANCD2Q9BXW9 1451 aa17.88■□□□□ 0.45
RFC3-201ENST00000380071 P3H3Q8IVL6 736 aa17.84■□□□□ 0.45
RFC3-201ENST00000380071 RAD54L2Q9Y4B4 1467 aa17.83■□□□□ 0.44
RFC3-201ENST00000380071 TIAM1Q13009 1591 aa17.82■□□□□ 0.44
RFC3-201ENST00000380071 NESP48681 1621 aa17.8■□□□□ 0.44
RFC3-201ENST00000380071 MAP3K1Q13233 1512 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms