RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 NISCHQ9Y2I1 1504 aa22.66■■□□□ 1.22
NEDD9-201ENST00000379433 DCAF8L2P0C7V8 631 aa19.85■□□□□ 0.77
NEDD9-201ENST00000379433 SHROOM4Q9ULL8 1493 aa19.76■□□□□ 0.75
NEDD9-201ENST00000379433 SUPT5HO00267 1087 aaKnown RBP19.23■□□□□ 0.67
NEDD9-201ENST00000379433 CCDC180Q9P1Z9 1646 aa19.14■□□□□ 0.66
NEDD9-201ENST00000379433 ZCCHC6Q5VYS8 1495 aaKnown RBP19.01■□□□□ 0.63
NEDD9-201ENST00000379433 ABCC9O60706 1549 aa18.77■□□□□ 0.6
NEDD9-201ENST00000379433 SCRIBQ14160 1630 aa18.39■□□□□ 0.53
NEDD9-201ENST00000379433 SLC24A1O60721 1099 aa18.3■□□□□ 0.52
NEDD9-201ENST00000379433 DCAF1Q9Y4B6 1507 aa18.28■□□□□ 0.52
NEDD9-201ENST00000379433 CHIC1Q5VXU3 224 aa18.14■□□□□ 0.49
NEDD9-201ENST00000379433 PABPN1Q86U42 306 aaKnown RBP eCLIP18.09■□□□□ 0.49
NEDD9-201ENST00000379433 EHMT2Q96KQ7 1210 aa18.03■□□□□ 0.48
NEDD9-201ENST00000379433 PELP1Q8IZL8 1130 aaKnown RBP17.97■□□□□ 0.47
NEDD9-201ENST00000379433 NACADO15069 1562 aa17.96■□□□□ 0.47
NEDD9-201ENST00000379433 MYT1Q01538 1121 aa17.96■□□□□ 0.47
NEDD9-201ENST00000379433 CECR2Q9BXF3 1484 aa17.93■□□□□ 0.46
NEDD9-201ENST00000379433 RSF1Q96T23 1441 aaPredicted RBP17.91■□□□□ 0.46
NEDD9-201ENST00000379433 FAM9AQ8IZU1 332 aaPredicted RBP17.9■□□□□ 0.46
NEDD9-201ENST00000379433 MYO15BQ96JP2 1530 aa17.88■□□□□ 0.45
NEDD9-201ENST00000379433 LOC105371045A0A1W2PR82 267 aa17.86■□□□□ 0.45
NEDD9-201ENST00000379433 RB1CC1Q8TDY2 1594 aa17.85■□□□□ 0.45
NEDD9-201ENST00000379433 TRIM41Q8WV44 630 aa17.75■□□□□ 0.43
NEDD9-201ENST00000379433 MROH2BQ7Z745 1585 aa17.72■□□□□ 0.43
NEDD9-201ENST00000379433 WIZO95785 1651 aa17.6■□□□□ 0.41
NEDD9-201ENST00000379433 PRKCSHP14314 528 aaPredicted RBP17.54■□□□□ 0.4
NEDD9-201ENST00000379433 PCGF6Q9BYE7 350 aa17.47■□□□□ 0.39
NEDD9-201ENST00000379433 UNC13AQ9UPW8 1703 aa17.46■□□□□ 0.39
NEDD9-201ENST00000379433 TTBK1Q5TCY1 1321 aaPredicted RBP17.44■□□□□ 0.38
NEDD9-201ENST00000379433 BAZ1AQ9NRL2 1556 aaPredicted RBP17.42■□□□□ 0.38
NEDD9-201ENST00000379433 PPARGC1BQ86YN6 1023 aaKnown RBP17.34■□□□□ 0.37
NEDD9-201ENST00000379433 BICRAQ9NZM4 1560 aa17.33■□□□□ 0.36
NEDD9-201ENST00000379433 SMARCA4P51532 1647 aa17.31■□□□□ 0.36
NEDD9-201ENST00000379433 CCDC88BA6NC98 1476 aa17.26■□□□□ 0.35
NEDD9-201ENST00000379433 ABCC8Q09428 1581 aa17.21■□□□□ 0.35
NEDD9-201ENST00000379433 RANGAP1P46060 587 aaPredicted RBP17.2■□□□□ 0.34
NEDD9-201ENST00000379433 ERICH6Q7L0X2 663 aa17.18■□□□□ 0.34
NEDD9-201ENST00000379433 TOP2AP11388 1531 aaKnown RBP17.16■□□□□ 0.34
NEDD9-201ENST00000379433 SMARCA2P51531 1590 aa17.09■□□□□ 0.33
NEDD9-201ENST00000379433 BAZ1BQ9UIG0 1483 aaKnown RBP17.09■□□□□ 0.33
NEDD9-201ENST00000379433 UBTFP17480 764 aaKnown RBP17.09■□□□□ 0.33
NEDD9-201ENST00000379433 ATAD2BQ9ULI0 1458 aa17.07■□□□□ 0.32
NEDD9-201ENST00000379433 SOGA1O94964 1423 aa17.01■□□□□ 0.31
NEDD9-201ENST00000379433 APLP2Q06481 763 aa17.01■□□□□ 0.31
NEDD9-201ENST00000379433 DAXXQ9UER7 740 aaPredicted RBP16.98■□□□□ 0.31
NEDD9-201ENST00000379433 RUSC2Q8N2Y8 1516 aa16.95■□□□□ 0.3
NEDD9-201ENST00000379433 TRIM26Q12899 539 aaPredicted RBP16.93■□□□□ 0.3
NEDD9-201ENST00000379433 CSRNP3Q8WYN3 585 aa16.91■□□□□ 0.3
NEDD9-201ENST00000379433 WRNQ14191 1432 aaPredicted RBP eCLIP16.9■□□□□ 0.3
NEDD9-201ENST00000379433 EIF4G1Q04637 1599 aaKnown RBP16.89■□□□□ 0.29
NEDD9-201ENST00000379433 HRCP23327 699 aa16.86■□□□□ 0.29
NEDD9-201ENST00000379433 DNAJC5BQ9UF47 199 aa16.77■□□□□ 0.28
NEDD9-201ENST00000379433 PEG3Q9GZU2 1588 aa16.77■□□□□ 0.27
NEDD9-201ENST00000379433 SYNJ1O43426 1573 aa16.73■□□□□ 0.27
NEDD9-201ENST00000379433 NCAPD3P42695 1498 aa16.7■□□□□ 0.26
NEDD9-201ENST00000379433 CEP162Q5TB80 1403 aa16.67■□□□□ 0.26
NEDD9-201ENST00000379433 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.64■□□□□ 0.25
NEDD9-201ENST00000379433 CC2D2AQ9P2K1 1620 aa16.62■□□□□ 0.25
NEDD9-201ENST00000379433 TNIKQ9UKE5 1360 aa16.55■□□□□ 0.24
NEDD9-201ENST00000379433 RAPGEF2Q9Y4G8 1499 aa16.55■□□□□ 0.24
NEDD9-201ENST00000379433 GOLGA3Q08378 1498 aa16.55■□□□□ 0.24
NEDD9-201ENST00000379433 HMGXB3Q12766 1538 aa16.55■□□□□ 0.24
NEDD9-201ENST00000379433 ATP1B4Q9UN42 357 aaPredicted RBP16.54■□□□□ 0.24
NEDD9-201ENST00000379433 NESP48681 1621 aa16.54■□□□□ 0.24
NEDD9-201ENST00000379433 HNRNPUL2Q1KMD3 747 aaKnown RBP16.53■□□□□ 0.24
NEDD9-201ENST00000379433 CCER1Q8TC90 406 aaPredicted RBP16.53■□□□□ 0.24
NEDD9-201ENST00000379433 CADPSQ9ULU8 1353 aa16.53■□□□□ 0.24
NEDD9-201ENST00000379433 EEA1Q15075 1411 aa16.52■□□□□ 0.23
NEDD9-201ENST00000379433 P3H3Q8IVL6 736 aa16.51■□□□□ 0.23
NEDD9-201ENST00000379433 CFTRP13569 1480 aa16.5■□□□□ 0.23
NEDD9-201ENST00000379433 CUX1P39880 1505 aa16.49■□□□□ 0.23
NEDD9-201ENST00000379433 CLIP1P30622 1438 aa16.48■□□□□ 0.23
NEDD9-201ENST00000379433 CEP164Q9UPV0 1460 aa16.47■□□□□ 0.23
NEDD9-201ENST00000379433 BCL11AQ9H165 835 aa16.45■□□□□ 0.22
NEDD9-201ENST00000379433 CUX2O14529 1486 aa16.43■□□□□ 0.22
NEDD9-201ENST00000379433 TOP2BQ02880 1626 aa16.42■□□□□ 0.22
NEDD9-201ENST00000379433 KIF27Q86VH2 1401 aa16.4■□□□□ 0.22
NEDD9-201ENST00000379433 ITGAEP38570 1179 aa16.39■□□□□ 0.21
NEDD9-201ENST00000379433 EIF5BO60841 1220 aaKnown RBP16.39■□□□□ 0.21
NEDD9-201ENST00000379433 FANCD2Q9BXW9 1451 aa16.38■□□□□ 0.21
NEDD9-201ENST00000379433 RAD54L2Q9Y4B4 1467 aa16.35■□□□□ 0.21
NEDD9-201ENST00000379433 FGD5Q6ZNL6 1462 aa16.34■□□□□ 0.21
NEDD9-201ENST00000379433 TDRD9Q8NDG6 1382 aaKnown RBP16.3■□□□□ 0.2
NEDD9-201ENST00000379433 KANK4Q5T7N3 995 aaPredicted RBP16.29■□□□□ 0.2
NEDD9-201ENST00000379433 IGF1RP08069 1367 aa16.27■□□□□ 0.2
NEDD9-201ENST00000379433 CARMIL1Q5VZK9 1371 aa16.27■□□□□ 0.2
NEDD9-201ENST00000379433 BIVM-ERCC5R4GMW8 1640 aa16.26■□□□□ 0.19
NEDD9-201ENST00000379433 ZEB1P37275 1124 aaPredicted RBP16.25■□□□□ 0.19
NEDD9-201ENST00000379433 ARID3CA6NKF2 412 aa16.25■□□□□ 0.19
NEDD9-201ENST00000379433 KIF21BO75037 1637 aa16.25■□□□□ 0.19
NEDD9-201ENST00000379433 VPS8Q8N3P4 1428 aa16.23■□□□□ 0.19
NEDD9-201ENST00000379433 PRXQ9BXM0 1461 aa16.23■□□□□ 0.19
NEDD9-201ENST00000379433 PLPPR3Q6T4P5 718 aa16.2■□□□□ 0.18
NEDD9-201ENST00000379433 POLA1P09884 1462 aaPredicted RBP16.17■□□□□ 0.18
NEDD9-201ENST00000379433 TOPBP1Q92547 1522 aa16.16■□□□□ 0.18
NEDD9-201ENST00000379433 ARAP1Q96P48 1450 aa16.16■□□□□ 0.18
NEDD9-201ENST00000379433 FBLN2P98095 1184 aa16.16■□□□□ 0.18
NEDD9-201ENST00000379433 PDS5BQ9NTI5 1447 aa16.13■□□□□ 0.17
NEDD9-201ENST00000379433 URB2Q14146 1524 aaKnown RBP16.11■□□□□ 0.17
NEDD9-201ENST00000379433 FAM50AQ14320 339 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms