RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 DDX6P26196 483 aaKnown RBP eCLIP10.47□□□□□ -0.731e-23■□□□□ 8.8
NEDD9-201ENST00000379433 RBM5P52756 815 aaKnown RBP eCLIP12.44□□□□□ -0.421e-19■■■■■ 58.1
NEDD9-201ENST00000379433 FXR2P51116 673 aaKnown RBP eCLIP11.94□□□□□ -0.51e-18■□□□□ 8.2
NEDD9-201ENST00000379433 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.99□□□□□ -0.973e-14■■□□□ 12.9
NEDD9-201ENST00000379433 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.14□□□□□ -0.472e-11■■□□□ 11.8
NEDD9-201ENST00000379433 ILF3Q12906 894 aaKnown RBP eCLIP10.2□□□□□ -0.783e-10■■■□□ 16.4
NEDD9-201ENST00000379433 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.85□□□□□ -0.673e-10■■□□□ 12.6
NEDD9-201ENST00000379433 PPIGQ13427 754 aaKnown RBP eCLIP10.61□□□□□ -0.714e-10■□□□□ 8.9
NEDD9-201ENST00000379433 HNRNPLP14866 589 aaKnown RBP eCLIP10.85□□□□□ -0.672e-9■■■□□ 17.6
NEDD9-201ENST00000379433 FUSP35637 526 aaKnown RBP eCLIP7.45□□□□□ -1.221e-8■■■□□ 15.2
NEDD9-201ENST00000379433 TIAL1Q01085 375 aaKnown RBP eCLIP10.67□□□□□ -0.72e-8■□□□□ 10.6
NEDD9-201ENST00000379433 AQRO60306 1485 aaKnown RBP eCLIP16.05■□□□□ 0.163e-8■■■□□ 16.2
NEDD9-201ENST00000379433 PTBP1P26599 531 aaKnown RBP eCLIP10.15□□□□□ -0.793e-8■■■□□ 15.4
NEDD9-201ENST00000379433 AGGF1Q8N302 714 aaeCLIP11.09□□□□□ -0.636e-8■□□□□ 10.6
NEDD9-201ENST00000379433 GTF2F1P35269 517 aaKnown RBP eCLIP11.81□□□□□ -0.527e-8■■■□□ 19.1
NEDD9-201ENST00000379433 QKIQ96PU8 341 aaKnown RBP eCLIP11.02□□□□□ -0.641e-7■■■■□ 19.7
NEDD9-201ENST00000379433 CSTF2P33240 577 aaKnown RBP eCLIP10.27□□□□□ -0.762e-7■■■■□ 21.4
NEDD9-201ENST00000379433 HLTFQ14527 1009 aaKnown RBP eCLIP11.61□□□□□ -0.552e-7■□□□□ 10.4
NEDD9-201ENST00000379433 LSM11P83369 360 aaKnown RBP eCLIP10.18□□□□□ -0.783e-7■■□□□ 13
NEDD9-201ENST00000379433 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.31□□□□□ -0.444e-7■■■■■ 41
NEDD9-201ENST00000379433 U2AF2P26368 475 aaKnown RBP eCLIP12.31□□□□□ -0.444e-7■■■□□ 14.8
NEDD9-201ENST00000379433 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.49□□□□□ -0.575e-7■■□□□ 12.5
NEDD9-201ENST00000379433 KHSRPQ92945 711 aaKnown RBP eCLIP11.19□□□□□ -0.627e-7■□□□□ 10.6
NEDD9-201ENST00000379433 RBM15Q96T37 977 aaKnown RBP eCLIP11.27□□□□□ -0.611e-6■■■□□ 19.2
NEDD9-201ENST00000379433 U2AF1Q01081 240 aaKnown RBP eCLIP14.18□□□□□ -0.141e-6■■□□□ 11.6
NEDD9-201ENST00000379433 SAFBQ15424 915 aaKnown RBP eCLIP12.44□□□□□ -0.421e-6■■■■□ 20.1
NEDD9-201ENST00000379433 HNRNPKP61978 463 aaKnown RBP eCLIP9.99□□□□□ -0.812e-6■□□□□ 10.5
NEDD9-201ENST00000379433 TAF15Q92804 592 aaKnown RBP eCLIP8.8□□□□□ -13e-6■□□□□ 9.1
NEDD9-201ENST00000379433 PCBP2Q15366 365 aaKnown RBP eCLIP10.46□□□□□ -0.743e-6■■■■□ 20.8
NEDD9-201ENST00000379433 SFPQP23246 707 aaKnown RBP eCLIP12.16□□□□□ -0.464e-6■■□□□ 13.1
NEDD9-201ENST00000379433 MATR3P43243 847 aaKnown RBP eCLIP11.85□□□□□ -0.514e-6■□□□□ 8.9
NEDD9-201ENST00000379433 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.99□□□□□ -0.659e-6■■□□□ 13.2
Retrieved 32 of 32 RNA–protein pairs in 14.5 ms