RNA–Protein interactions for RNA: ENST00000378043.8

BEST1-201, Transcript of bestrophin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BEST1, Length 2,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BEST1-201ENST00000378043 NISCHQ9Y2I1 1504 aa22.88■■□□□ 1.25
BEST1-201ENST00000378043 CCDC180Q9P1Z9 1646 aa19.47■□□□□ 0.71
BEST1-201ENST00000378043 SHROOM4Q9ULL8 1493 aa19.42■□□□□ 0.7
BEST1-201ENST00000378043 ZCCHC6Q5VYS8 1495 aaKnown RBP19.36■□□□□ 0.69
BEST1-201ENST00000378043 SUPT5HO00267 1087 aaKnown RBP19.03■□□□□ 0.64
BEST1-201ENST00000378043 DCAF8L2P0C7V8 631 aa18.85■□□□□ 0.61
BEST1-201ENST00000378043 DCAF1Q9Y4B6 1507 aa18.79■□□□□ 0.6
BEST1-201ENST00000378043 CHIC1Q5VXU3 224 aa18.56■□□□□ 0.56
BEST1-201ENST00000378043 MYO15BQ96JP2 1530 aa18.52■□□□□ 0.56
BEST1-201ENST00000378043 ABCC9O60706 1549 aa18.26■□□□□ 0.51
BEST1-201ENST00000378043 SCRIBQ14160 1630 aa18.21■□□□□ 0.51
BEST1-201ENST00000378043 RSF1Q96T23 1441 aaPredicted RBP18.1■□□□□ 0.49
BEST1-201ENST00000378043 LOC105371045A0A1W2PR82 267 aa18■□□□□ 0.47
BEST1-201ENST00000378043 NACADO15069 1562 aa17.98■□□□□ 0.47
BEST1-201ENST00000378043 HRCP23327 699 aa17.95■□□□□ 0.46
BEST1-201ENST00000378043 PCGF6Q9BYE7 350 aa17.92■□□□□ 0.46
BEST1-201ENST00000378043 RB1CC1Q8TDY2 1594 aa17.92■□□□□ 0.46
BEST1-201ENST00000378043 CECR2Q9BXF3 1484 aa17.85■□□□□ 0.45
BEST1-201ENST00000378043 MROH2BQ7Z745 1585 aa17.79■□□□□ 0.44
BEST1-201ENST00000378043 TRIM41Q8WV44 630 aa17.73■□□□□ 0.43
BEST1-201ENST00000378043 WIZO95785 1651 aa17.7■□□□□ 0.42
BEST1-201ENST00000378043 TRIM26Q12899 539 aaPredicted RBP17.6■□□□□ 0.41
BEST1-201ENST00000378043 PPARGC1BQ86YN6 1023 aaKnown RBP17.58■□□□□ 0.4
BEST1-201ENST00000378043 BAZ1AQ9NRL2 1556 aaPredicted RBP17.58■□□□□ 0.4
BEST1-201ENST00000378043 FAM9AQ8IZU1 332 aaPredicted RBP17.57■□□□□ 0.4
BEST1-201ENST00000378043 UNC13AQ9UPW8 1703 aa17.5■□□□□ 0.39
BEST1-201ENST00000378043 EIF4G1Q04637 1599 aaKnown RBP17.5■□□□□ 0.39
BEST1-201ENST00000378043 SMARCA4P51532 1647 aa17.43■□□□□ 0.38
BEST1-201ENST00000378043 EHMT2Q96KQ7 1210 aa17.4■□□□□ 0.38
BEST1-201ENST00000378043 TOP2AP11388 1531 aaKnown RBP17.4■□□□□ 0.38
BEST1-201ENST00000378043 CCDC88BA6NC98 1476 aa17.33■□□□□ 0.36
BEST1-201ENST00000378043 SMARCA2P51531 1590 aa17.32■□□□□ 0.36
BEST1-201ENST00000378043 ABCC8Q09428 1581 aa17.28■□□□□ 0.36
BEST1-201ENST00000378043 BICRAQ9NZM4 1560 aa17.25■□□□□ 0.35
BEST1-201ENST00000378043 PABPN1Q86U42 306 aaKnown RBP eCLIP17.18■□□□□ 0.34
BEST1-201ENST00000378043 ZEB1P37275 1124 aaPredicted RBP17.18■□□□□ 0.34
BEST1-201ENST00000378043 PEG3Q9GZU2 1588 aa17.12■□□□□ 0.33
BEST1-201ENST00000378043 SOGA1O94964 1423 aa17.11■□□□□ 0.33
BEST1-201ENST00000378043 RUSC2Q8N2Y8 1516 aa17.05■□□□□ 0.32
BEST1-201ENST00000378043 WRNQ14191 1432 aaPredicted RBP eCLIP17.02■□□□□ 0.32
BEST1-201ENST00000378043 CEP162Q5TB80 1403 aa17.01■□□□□ 0.31
BEST1-201ENST00000378043 EEA1Q15075 1411 aa17■□□□□ 0.31
BEST1-201ENST00000378043 TNIKQ9UKE5 1360 aa16.99■□□□□ 0.31
BEST1-201ENST00000378043 CSRNP3Q8WYN3 585 aa16.98■□□□□ 0.31
BEST1-201ENST00000378043 ATAD2BQ9ULI0 1458 aa16.97■□□□□ 0.31
BEST1-201ENST00000378043 SYNJ1O43426 1573 aa16.93■□□□□ 0.3
BEST1-201ENST00000378043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.9■□□□□ 0.3
BEST1-201ENST00000378043 BAZ1BQ9UIG0 1483 aaKnown RBP16.89■□□□□ 0.29
BEST1-201ENST00000378043 GOLGA3Q08378 1498 aa16.89■□□□□ 0.29
BEST1-201ENST00000378043 UBTFP17480 764 aaKnown RBP16.88■□□□□ 0.29
BEST1-201ENST00000378043 TTBK1Q5TCY1 1321 aaPredicted RBP16.84■□□□□ 0.29
BEST1-201ENST00000378043 CCER1Q8TC90 406 aaPredicted RBP16.82■□□□□ 0.28
BEST1-201ENST00000378043 KIF21BO75037 1637 aa16.81■□□□□ 0.28
BEST1-201ENST00000378043 CEP164Q9UPV0 1460 aa16.79■□□□□ 0.28
BEST1-201ENST00000378043 TOP2BQ02880 1626 aa16.72■□□□□ 0.27
BEST1-201ENST00000378043 RAPGEF2Q9Y4G8 1499 aa16.7■□□□□ 0.26
BEST1-201ENST00000378043 CLIP1P30622 1438 aa16.69■□□□□ 0.26
BEST1-201ENST00000378043 BIVM-ERCC5R4GMW8 1640 aa16.67■□□□□ 0.26
BEST1-201ENST00000378043 NCAPD3P42695 1498 aa16.65■□□□□ 0.26
BEST1-201ENST00000378043 HMGXB3Q12766 1538 aa16.64■□□□□ 0.25
BEST1-201ENST00000378043 VPS8Q8N3P4 1428 aa16.63■□□□□ 0.25
BEST1-201ENST00000378043 CUX1P39880 1505 aa16.56■□□□□ 0.24
BEST1-201ENST00000378043 PRXQ9BXM0 1461 aa16.55■□□□□ 0.24
BEST1-201ENST00000378043 ERICH3Q5RHP9 1530 aa16.54■□□□□ 0.24
BEST1-201ENST00000378043 SCAF1Q9H7N4 1312 aaKnown RBP16.53■□□□□ 0.24
BEST1-201ENST00000378043 RANGAP1P46060 587 aaPredicted RBP16.52■□□□□ 0.24
BEST1-201ENST00000378043 CFTRP13569 1480 aa16.51■□□□□ 0.23
BEST1-201ENST00000378043 HNRNPUL2Q1KMD3 747 aaKnown RBP16.51■□□□□ 0.23
BEST1-201ENST00000378043 DIEXFQ68CQ4 756 aaKnown RBP16.5■□□□□ 0.23
BEST1-201ENST00000378043 ARAP1Q96P48 1450 aa16.46■□□□□ 0.23
BEST1-201ENST00000378043 APLP2Q06481 763 aa16.46■□□□□ 0.23
BEST1-201ENST00000378043 KIF27Q86VH2 1401 aa16.44■□□□□ 0.22
BEST1-201ENST00000378043 PRDM2Q13029 1718 aa16.41■□□□□ 0.22
BEST1-201ENST00000378043 ZNF316A6NFI3 1004 aaPredicted RBP16.39■□□□□ 0.22
BEST1-201ENST00000378043 NEUROD1Q13562 356 aa16.37■□□□□ 0.21
BEST1-201ENST00000378043 ACIN1Q9UKV3 1341 aaKnown RBP16.37■□□□□ 0.21
BEST1-201ENST00000378043 KANK4Q5T7N3 995 aaPredicted RBP16.35■□□□□ 0.21
BEST1-201ENST00000378043 ARHGAP35Q9NRY4 1499 aa16.32■□□□□ 0.2
BEST1-201ENST00000378043 CADPSQ9ULU8 1353 aa16.3■□□□□ 0.2
BEST1-201ENST00000378043 IGF1RP08069 1367 aa16.29■□□□□ 0.2
BEST1-201ENST00000378043 CUX2O14529 1486 aa16.28■□□□□ 0.2
BEST1-201ENST00000378043 RRBP1Q9P2E9 1410 aaKnown RBP16.26■□□□□ 0.19
BEST1-201ENST00000378043 FGD5Q6ZNL6 1462 aa16.24■□□□□ 0.19
BEST1-201ENST00000378043 DHX57Q6P158 1386 aaKnown RBP16.24■□□□□ 0.19
BEST1-201ENST00000378043 CC2D2AQ9P2K1 1620 aa16.23■□□□□ 0.19
BEST1-201ENST00000378043 CENPBP07199 599 aaPredicted RBP16.22■□□□□ 0.19
BEST1-201ENST00000378043 CLSPNQ9HAW4 1339 aa16.2■□□□□ 0.18
BEST1-201ENST00000378043 CARMIL1Q5VZK9 1371 aa16.19■□□□□ 0.18
BEST1-201ENST00000378043 MIER1Q8N108 512 aa16.18■□□□□ 0.18
BEST1-201ENST00000378043 CCNB3Q8WWL7 1395 aa16.17■□□□□ 0.18
BEST1-201ENST00000378043 GTF3C3Q9Y5Q9 886 aa16.17■□□□□ 0.18
BEST1-201ENST00000378043 FANCD2Q9BXW9 1451 aa16.15■□□□□ 0.18
BEST1-201ENST00000378043 TIAM1Q13009 1591 aa16.14■□□□□ 0.17
BEST1-201ENST00000378043 MAP3K1Q13233 1512 aa16.12■□□□□ 0.17
BEST1-201ENST00000378043 DNMBPQ6XZF7 1577 aa16.09■□□□□ 0.17
BEST1-201ENST00000378043 RAD54L2Q9Y4B4 1467 aa16.08■□□□□ 0.16
BEST1-201ENST00000378043 PELP1Q8IZL8 1130 aaKnown RBP16.07■□□□□ 0.16
BEST1-201ENST00000378043 YTHDC1Q96MU7 727 aaKnown RBP16.07■□□□□ 0.16
BEST1-201ENST00000378043 LRRC9Q6ZRR7 1453 aa16.07■□□□□ 0.16
BEST1-201ENST00000378043 ABCA10Q8WWZ4 1543 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms