RNA–Protein interactions for RNA: ENST00000377625.6

TBC1D4-201, Transcript of TBC1 domain family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TBC1D4, Length 6,182 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TBC1D4-201ENST00000377625 DCAF8L2P0C7V8 631 aa32.95■■■□□ 2.86
TBC1D4-201ENST00000377625 SUPT5HO00267 1087 aaKnown RBP31.15■■■□□ 2.58
TBC1D4-201ENST00000377625 SHROOM4Q9ULL8 1493 aa30.44■■■□□ 2.46
TBC1D4-201ENST00000377625 EHMT2Q96KQ7 1210 aa30.42■■■□□ 2.46
TBC1D4-201ENST00000377625 NISCHQ9Y2I1 1504 aa30.29■■■□□ 2.44
TBC1D4-201ENST00000377625 PELP1Q8IZL8 1130 aaKnown RBP30.09■■■□□ 2.41
TBC1D4-201ENST00000377625 APLP2Q06481 763 aa29.94■■■□□ 2.38
TBC1D4-201ENST00000377625 FAM9AQ8IZU1 332 aaPredicted RBP29.5■■■□□ 2.31
TBC1D4-201ENST00000377625 TTBK1Q5TCY1 1321 aaPredicted RBP29.41■■■□□ 2.3
TBC1D4-201ENST00000377625 PCGF6Q9BYE7 350 aa29.13■■■□□ 2.25
TBC1D4-201ENST00000377625 RANGAP1P46060 587 aaPredicted RBP29.09■■■□□ 2.25
TBC1D4-201ENST00000377625 ATP1B4Q9UN42 357 aaPredicted RBP28.91■■■□□ 2.22
TBC1D4-201ENST00000377625 ERICH6Q7L0X2 663 aa28.89■■■□□ 2.22
TBC1D4-201ENST00000377625 CENPBP07199 599 aaPredicted RBP28.84■■■□□ 2.21
TBC1D4-201ENST00000377625 TRIM41Q8WV44 630 aa28.81■■■□□ 2.2
TBC1D4-201ENST00000377625 CCER1Q8TC90 406 aaPredicted RBP28.8■■■□□ 2.2
TBC1D4-201ENST00000377625 ZEB1P37275 1124 aaPredicted RBP28.73■■■□□ 2.19
TBC1D4-201ENST00000377625 UBTFP17480 764 aaKnown RBP28.62■■■□□ 2.17
TBC1D4-201ENST00000377625 NEFLP07196 543 aa28.39■■■□□ 2.14
TBC1D4-201ENST00000377625 YTHDC1Q96MU7 727 aaKnown RBP28.29■■■□□ 2.12
TBC1D4-201ENST00000377625 PPARGC1BQ86YN6 1023 aaKnown RBP28.11■■■□□ 2.09
TBC1D4-201ENST00000377625 MYT1LQ9UL68 1186 aa27.92■■■□□ 2.06
TBC1D4-201ENST00000377625 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.86■■■□□ 2.05
TBC1D4-201ENST00000377625 HNRNPUL2Q1KMD3 747 aaKnown RBP27.86■■■□□ 2.05
TBC1D4-201ENST00000377625 ITGAEP38570 1179 aa27.83■■■□□ 2.05
TBC1D4-201ENST00000377625 POLR3GLQ9BT43 218 aa27.81■■■□□ 2.04
TBC1D4-201ENST00000377625 TRIM26Q12899 539 aaPredicted RBP27.78■■■□□ 2.04
TBC1D4-201ENST00000377625 DAXXQ9UER7 740 aaPredicted RBP27.71■■■□□ 2.03
TBC1D4-201ENST00000377625 MYT1Q01538 1121 aa27.64■■■□□ 2.01
TBC1D4-201ENST00000377625 CNGB1Q14028 1251 aaPredicted RBP27.53■■■□□ 2
TBC1D4-201ENST00000377625 HRCP23327 699 aa27.48■■□□□ 1.99
TBC1D4-201ENST00000377625 CHIC1Q5VXU3 224 aa27.43■■□□□ 1.98
TBC1D4-201ENST00000377625 LOC105371045A0A1W2PR82 267 aa27.4■■□□□ 1.98
TBC1D4-201ENST00000377625 SLC4A1APQ9BWU0 796 aaKnown RBP27.36■■□□□ 1.97
TBC1D4-201ENST00000377625 CLSPNQ9HAW4 1339 aa27.1■■□□□ 1.93
TBC1D4-201ENST00000377625 FAM50AQ14320 339 aaKnown RBP27.05■■□□□ 1.92
TBC1D4-201ENST00000377625 ZNF316A6NFI3 1004 aaPredicted RBP27.03■■□□□ 1.92
TBC1D4-201ENST00000377625 TRIM52Q96A61 297 aa26.98■■□□□ 1.91
TBC1D4-201ENST00000377625 RTL5Q5HYW3 569 aaPredicted RBP26.94■■□□□ 1.9
TBC1D4-201ENST00000377625 DIEXFQ68CQ4 756 aaKnown RBP26.94■■□□□ 1.9
TBC1D4-201ENST00000377625 NEUROD1Q13562 356 aa26.84■■□□□ 1.89
TBC1D4-201ENST00000377625 ZNF326Q5BKZ1 582 aaKnown RBP26.72■■□□□ 1.87
TBC1D4-201ENST00000377625 PABPN1Q86U42 306 aaKnown RBP eCLIP26.72■■□□□ 1.87
TBC1D4-201ENST00000377625 ZBTB47Q9UFB7 747 aaPredicted RBP26.61■■□□□ 1.85
TBC1D4-201ENST00000377625 ANP32CO43423 234 aa26.6■■□□□ 1.85
TBC1D4-201ENST00000377625 BCANQ96GW7 911 aa26.6■■□□□ 1.85
TBC1D4-201ENST00000377625 FBLN2P98095 1184 aa26.58■■□□□ 1.85
TBC1D4-201ENST00000377625 ABCC9O60706 1549 aa26.51■■□□□ 1.83
TBC1D4-201ENST00000377625 SLC24A1O60721 1099 aa26.48■■□□□ 1.83
TBC1D4-201ENST00000377625 CDK11AQ9UQ88 783 aaPredicted RBP26.43■■□□□ 1.82
TBC1D4-201ENST00000377625 CANXP27824 592 aaKnown RBP26.43■■□□□ 1.82
TBC1D4-201ENST00000377625 BCL11AQ9H165 835 aa26.4■■□□□ 1.82
TBC1D4-201ENST00000377625 GTF3C3Q9Y5Q9 886 aa26.36■■□□□ 1.81
TBC1D4-201ENST00000377625 NEFMP07197 916 aa26.36■■□□□ 1.81
TBC1D4-201ENST00000377625 ARID3CA6NKF2 412 aa26.31■■□□□ 1.8
TBC1D4-201ENST00000377625 P3H3Q8IVL6 736 aa26.29■■□□□ 1.8
TBC1D4-201ENST00000377625 ZNF777Q9ULD5 760 aaPredicted RBP26.19■■□□□ 1.78
TBC1D4-201ENST00000377625 CSRNP3Q8WYN3 585 aa26.07■■□□□ 1.76
TBC1D4-201ENST00000377625 ANP32AP39687 249 aaKnown RBP26.02■■□□□ 1.76
TBC1D4-201ENST00000377625 ESF1Q9H501 851 aaKnown RBP26.01■■□□□ 1.75
TBC1D4-201ENST00000377625 NPM2Q86SE8 214 aaKnown RBP25.95■■□□□ 1.75
TBC1D4-201ENST00000377625 CHGAP10645 457 aaKnown RBP25.93■■□□□ 1.74
TBC1D4-201ENST00000377625 STAG3Q9UJ98 1225 aa25.9■■□□□ 1.74
TBC1D4-201ENST00000377625 ACIN1Q9UKV3 1341 aaKnown RBP25.87■■□□□ 1.73
TBC1D4-201ENST00000377625 TONSLQ96HA7 1378 aa25.84■■□□□ 1.73
TBC1D4-201ENST00000377625 PLPPR3Q6T4P5 718 aa25.8■■□□□ 1.72
TBC1D4-201ENST00000377625 HSP90AA1P07900 732 aaKnown RBP25.79■■□□□ 1.72
TBC1D4-201ENST00000377625 FKBP8Q14318 412 aa25.74■■□□□ 1.71
TBC1D4-201ENST00000377625 ANP32BQ92688 251 aaKnown RBP25.74■■□□□ 1.71
TBC1D4-201ENST00000377625 NPM1P06748 294 aaKnown RBP eCLIP25.73■■□□□ 1.71
TBC1D4-201ENST00000377625 HNRNPUQ00839 825 aaKnown RBP eCLIP25.72■■□□□ 1.71
TBC1D4-201ENST00000377625 FAM9BQ8IZU0 186 aa25.71■■□□□ 1.71
TBC1D4-201ENST00000377625 UPF2Q9HAU5 1272 aaKnown RBP25.71■■□□□ 1.71
TBC1D4-201ENST00000377625 SALL2Q9Y467 1007 aaPredicted RBP25.67■■□□□ 1.7
TBC1D4-201ENST00000377625 DDX10Q13206 875 aaKnown RBP25.65■■□□□ 1.7
TBC1D4-201ENST00000377625 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.63■■□□□ 1.692e-8■□□□□ 11.2
TBC1D4-201ENST00000377625 CHIC2Q9UKJ5 165 aa25.61■■□□□ 1.69
TBC1D4-201ENST00000377625 TMC1Q8TDI8 760 aa25.57■■□□□ 1.68
TBC1D4-201ENST00000377625 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.52■■□□□ 1.68
TBC1D4-201ENST00000377625 WDR43Q15061 677 aaKnown RBP eCLIP25.51■■□□□ 1.67
TBC1D4-201ENST00000377625 SCRIBQ14160 1630 aa25.49■■□□□ 1.67
TBC1D4-201ENST00000377625 CCDC136Q96JN2 1154 aa25.49■■□□□ 1.67
TBC1D4-201ENST00000377625 EIF5BO60841 1220 aaKnown RBP25.48■■□□□ 1.67
TBC1D4-201ENST00000377625 KDM2AQ9Y2K7 1162 aa25.47■■□□□ 1.67
TBC1D4-201ENST00000377625 TSPY4P0CV99 314 aa25.46■■□□□ 1.67
TBC1D4-201ENST00000377625 TSPY10P0CW01 314 aa25.46■■□□□ 1.67
TBC1D4-201ENST00000377625 MRS2Q9HD23 443 aa25.4■■□□□ 1.66
TBC1D4-201ENST00000377625 SCAF1Q9H7N4 1312 aaKnown RBP25.4■■□□□ 1.66
TBC1D4-201ENST00000377625 MTUS2Q5JR59 1369 aa25.34■■□□□ 1.65
TBC1D4-201ENST00000377625 A0A0G2JS52 829 aa25.29■■□□□ 1.64
TBC1D4-201ENST00000377625 MYH16Q9H6N6 1097 aa25.29■■□□□ 1.64
TBC1D4-201ENST00000377625 CHMP7Q8WUX9 453 aaPredicted RBP25.28■■□□□ 1.64
TBC1D4-201ENST00000377625 ARXQ96QS3 562 aa25.28■■□□□ 1.64
TBC1D4-201ENST00000377625 NBR1Q14596 966 aa25.28■■□□□ 1.64
TBC1D4-201ENST00000377625 DCAF1Q9Y4B6 1507 aa25.23■■□□□ 1.63
TBC1D4-201ENST00000377625 ZBTB7CA1YPR0 619 aa25.23■■□□□ 1.63
TBC1D4-201ENST00000377625 HIRIP3Q9BW71 556 aaPredicted RBP25.22■■□□□ 1.63
TBC1D4-201ENST00000377625 SENP3Q9H4L4 574 aaPredicted RBP25.21■■□□□ 1.63
TBC1D4-201ENST00000377625 IRX6P78412 446 aaPredicted RBP25.2■■□□□ 1.62
TBC1D4-201ENST00000377625 PLEKHG5O94827 1062 aa25.19■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms