RNA–Protein interactions for RNA: ENST00000374826.8

PMS1-202, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

TSL 1 (best) BASIC

Gene PMS1, Length 948 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-202ENST00000374826 AEBP2Q6ZN18 517 aaPredicted RBP30.05■■■□□ 2.4
PMS1-202ENST00000374826 CHIC1Q5VXU3 224 aa28.55■■■□□ 2.16
PMS1-202ENST00000374826 SENP3Q9H4L4 574 aaPredicted RBP25.62■■□□□ 1.69
PMS1-202ENST00000374826 PHF23Q9BUL5 403 aaPredicted RBP25.33■■□□□ 1.65
PMS1-202ENST00000374826 FOXD1Q16676 465 aa23.89■■□□□ 1.41
PMS1-202ENST00000374826 PLPPR3Q6T4P5 718 aa22.82■■□□□ 1.24
PMS1-202ENST00000374826 PPP6R1Q9UPN7 881 aa22.38■■□□□ 1.17
PMS1-202ENST00000374826 MSH5O43196 834 aa22.33■■□□□ 1.17
PMS1-202ENST00000374826 PIAS4Q8N2W9 510 aaPredicted RBP22.3■■□□□ 1.16
PMS1-202ENST00000374826 ADRA2BP18089 450 aa22.29■■□□□ 1.16
PMS1-202ENST00000374826 POTEDQ86YR6 584 aa21.88■■□□□ 1.09
PMS1-202ENST00000374826 MAPK8IP2Q13387 824 aaPredicted RBP20.49■□□□□ 0.87
PMS1-202ENST00000374826 SCAF1Q9H7N4 1312 aaKnown RBP20.4■□□□□ 0.86
PMS1-202ENST00000374826 DMRT2Q9Y5R5 561 aa20.33■□□□□ 0.85
PMS1-202ENST00000374826 PPP4R3CPQ6ZMV5 832 aa20.02■□□□□ 0.8
PMS1-202ENST00000374826 CNKSR2Q8WXI2 1034 aa19.64■□□□□ 0.73
PMS1-202ENST00000374826 HOXD11P31277 338 aaPredicted RBP19.59■□□□□ 0.73
PMS1-202ENST00000374826 DCAF8L1A6NGE4 600 aa19.47■□□□□ 0.71
PMS1-202ENST00000374826 RNF216Q9NWF9 866 aaPredicted RBP19.45■□□□□ 0.7
PMS1-202ENST00000374826 NCBP3Q53F19 620 aaKnown RBP19.25■□□□□ 0.67
PMS1-202ENST00000374826 CACNB1Q02641 598 aaPredicted RBP19.16■□□□□ 0.66
PMS1-202ENST00000374826 RNF39Q9H2S5 420 aa19.07■□□□□ 0.64
PMS1-202ENST00000374826 NPM3O75607 178 aaKnown RBP18.97■□□□□ 0.63
PMS1-202ENST00000374826 DNAJC5BQ9UF47 199 aa18.93■□□□□ 0.62
PMS1-202ENST00000374826 C1QBPQ07021 282 aaKnown RBP18.8■□□□□ 0.6
PMS1-202ENST00000374826 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.66■□□□□ 0.584e-6■□□□□ 11.1
PMS1-202ENST00000374826 KCNA4P22459 653 aa18.62■□□□□ 0.57
PMS1-202ENST00000374826 U3KPZ7 1027 aaPredicted RBP18.26■□□□□ 0.51
PMS1-202ENST00000374826 SLC4A2P04920 1241 aa18.12■□□□□ 0.49
PMS1-202ENST00000374826 SPINK5Q9NQ38 1064 aaPredicted RBP18■□□□□ 0.47
PMS1-202ENST00000374826 CAPN15O75808 1086 aa17.96■□□□□ 0.47
PMS1-202ENST00000374826 DSG3P32926 999 aa17.87■□□□□ 0.45
PMS1-202ENST00000374826 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.76■□□□□ 0.43
PMS1-202ENST00000374826 HNRNPUL2Q1KMD3 747 aaKnown RBP17.76■□□□□ 0.43
PMS1-202ENST00000374826 APLP2Q06481 763 aa17.75■□□□□ 0.43
PMS1-202ENST00000374826 TRHP20396 242 aaPredicted RBP17.69■□□□□ 0.42
PMS1-202ENST00000374826 SAMD1Q6SPF0 538 aaPredicted RBP17.66■□□□□ 0.42
PMS1-202ENST00000374826 ZNF219Q9P2Y4 722 aaPredicted RBP17.63■□□□□ 0.41
PMS1-202ENST00000374826 SLC4A1APQ9BWU0 796 aaKnown RBP17.58■□□□□ 0.4
PMS1-202ENST00000374826 ABCB7O75027 752 aa17.54■□□□□ 0.4
PMS1-202ENST00000374826 MYCNP04198 464 aaPredicted RBP17.53■□□□□ 0.4
PMS1-202ENST00000374826 FOXD4L1Q9NU39 408 aa17.36■□□□□ 0.37
PMS1-202ENST00000374826 POLA2Q14181 598 aa17.24■□□□□ 0.35
PMS1-202ENST00000374826 ATF5Q9Y2D1 282 aaPredicted RBP17.15■□□□□ 0.34
PMS1-202ENST00000374826 ZBTB22O15209 634 aa17.11■□□□□ 0.33
PMS1-202ENST00000374826 POTEHQ6S545 545 aa17.06■□□□□ 0.32
PMS1-202ENST00000374826 RBM42Q9BTD8 480 aaKnown RBP17.03■□□□□ 0.32
PMS1-202ENST00000374826 ZBTB12Q9Y330 459 aaPredicted RBP16.86■□□□□ 0.29
PMS1-202ENST00000374826 ATXN8OSP0DMR3 200 aa16.85■□□□□ 0.29
PMS1-202ENST00000374826 CHRDL2Q6WN34 429 aa16.66■□□□□ 0.26
PMS1-202ENST00000374826 AKT1S1Q96B36 256 aa16.66■□□□□ 0.26
PMS1-202ENST00000374826 OSCARQ8IYS5 282 aa16.63■□□□□ 0.25
PMS1-202ENST00000374826 REM2Q8IYK8 340 aaPredicted RBP16.51■□□□□ 0.23
PMS1-202ENST00000374826 FBLN2P98095 1184 aa16.46■□□□□ 0.23
PMS1-202ENST00000374826 CSRNP3Q8WYN3 585 aa16.38■□□□□ 0.21
PMS1-202ENST00000374826 SPDYE2BA6NHP3 402 aa16.35■□□□□ 0.21
PMS1-202ENST00000374826 SPDYE6P0CI01 402 aa16.35■□□□□ 0.21
PMS1-202ENST00000374826 MKRN4PQ13434 485 aaPredicted RBP16.35■□□□□ 0.21
PMS1-202ENST00000374826 SPDYE2Q495Y8 402 aa16.35■□□□□ 0.21
PMS1-202ENST00000374826 PITPNM1O00562 1244 aa16.31■□□□□ 0.2
PMS1-202ENST00000374826 PIP4P2Q8N4L2 257 aa16.27■□□□□ 0.2
PMS1-202ENST00000374826 FXR2P51116 673 aaKnown RBP eCLIP16.19■□□□□ 0.18
PMS1-202ENST00000374826 ZNF692Q9BU19 519 aaPredicted RBP16.18■□□□□ 0.18
PMS1-202ENST00000374826 SSUH2Q9Y2M2 353 aa16.13■□□□□ 0.17
PMS1-202ENST00000374826 EHMT2Q96KQ7 1210 aa16.12■□□□□ 0.17
PMS1-202ENST00000374826 SPDYE1Q8NFV5 336 aaPredicted RBP16.06■□□□□ 0.16
PMS1-202ENST00000374826 CLEC11AQ9Y240 323 aa16.03■□□□□ 0.16
PMS1-202ENST00000374826 SP7Q8TDD2 431 aaPredicted RBP16■□□□□ 0.15
PMS1-202ENST00000374826 HAX1O00165 279 aa15.99■□□□□ 0.15
PMS1-202ENST00000374826 PABPN1Q86U42 306 aaKnown RBP eCLIP15.93■□□□□ 0.14
PMS1-202ENST00000374826 PRKAR2AP13861 404 aaKnown RBP15.9■□□□□ 0.14
PMS1-202ENST00000374826 EVX2Q03828 476 aa15.8■□□□□ 0.12
PMS1-202ENST00000374826 PRR29P0C7W0 189 aa15.79■□□□□ 0.12
PMS1-202ENST00000374826 CHADLQ6NUI6 762 aa15.72■□□□□ 0.11
PMS1-202ENST00000374826 C19orf67A6NJJ6 358 aa15.67■□□□□ 0.1
PMS1-202ENST00000374826 SPDYE4A6NLX3 237 aa15.59■□□□□ 0.09
PMS1-202ENST00000374826 FARP1Q9Y4F1 1045 aaPredicted RBP15.51■□□□□ 0.07
PMS1-202ENST00000374826 STAG3Q9UJ98 1225 aa15.5■□□□□ 0.07
PMS1-202ENST00000374826 GABBR2O75899 941 aa15.44■□□□□ 0.06
PMS1-202ENST00000374826 CREBZFQ9NS37 354 aa15.39■□□□□ 0.05
PMS1-202ENST00000374826 CD44P16070 742 aaKnown RBP15.38■□□□□ 0.05
PMS1-202ENST00000374826 CLCN6P51797 869 aa15.22■□□□□ 0.03
PMS1-202ENST00000374826 PROM2Q8N271 834 aa15.22■□□□□ 0.03
PMS1-202ENST00000374826 ZRANB1Q9UGI0 708 aa15.19■□□□□ 0.02
PMS1-202ENST00000374826 ZNF579Q8NAF0 562 aaKnown RBP15.15■□□□□ 0.02
PMS1-202ENST00000374826 MNX1P50219 401 aaPredicted RBP15.14■□□□□ 0.01
PMS1-202ENST00000374826 NPM1P06748 294 aaKnown RBP eCLIP15.11■□□□□ 0.01
PMS1-202ENST00000374826 POTEIP0CG38 1075 aa15.11■□□□□ 0.01
PMS1-202ENST00000374826 PAK3O75914 559 aaPredicted RBP15.05■□□□□ -0
PMS1-202ENST00000374826 LHX8Q68G74 356 aa15.03■□□□□ -0
PMS1-202ENST00000374826 DCBLD2Q96PD2 775 aa15.02■□□□□ -0
PMS1-202ENST00000374826 GALR2O43603 387 aaPredicted RBP14.97□□□□□ -0.01
PMS1-202ENST00000374826 PHF12Q96QT6 1004 aa14.96□□□□□ -0.01
PMS1-202ENST00000374826 MIER1Q8N108 512 aa14.9□□□□□ -0.02
PMS1-202ENST00000374826 PLEKHG5O94827 1062 aa14.85□□□□□ -0.03
PMS1-202ENST00000374826 TSPYL2Q9H2G4 693 aaPredicted RBP14.84□□□□□ -0.03
PMS1-202ENST00000374826 FKBP8Q14318 412 aa14.82□□□□□ -0.04
PMS1-202ENST00000374826 CCDC61Q9Y6R9 512 aa14.77□□□□□ -0.05
PMS1-202ENST00000374826 MS4A3Q96HJ5 214 aa14.76□□□□□ -0.05
PMS1-202ENST00000374826 PLCD3Q8N3E9 789 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms