RNA–Protein interactions for RNA: ENST00000374199.8

PRPF4-202, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PRPF4, Length 3,212 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-202ENST00000374199 NISCHQ9Y2I1 1504 aa28.6■■■□□ 2.17
PRPF4-202ENST00000374199 CCDC180Q9P1Z9 1646 aa25.02■■□□□ 1.6
PRPF4-202ENST00000374199 ZCCHC6Q5VYS8 1495 aaKnown RBP24.16■■□□□ 1.46
PRPF4-202ENST00000374199 DCAF1Q9Y4B6 1507 aa23.87■■□□□ 1.41
PRPF4-202ENST00000374199 MYO15BQ96JP2 1530 aa23.52■■□□□ 1.36
PRPF4-202ENST00000374199 NACADO15069 1562 aa23.09■■□□□ 1.29
PRPF4-202ENST00000374199 SHROOM4Q9ULL8 1493 aa22.96■■□□□ 1.27
PRPF4-202ENST00000374199 ABCC9O60706 1549 aa22.88■■□□□ 1.25
PRPF4-202ENST00000374199 RB1CC1Q8TDY2 1594 aa22.75■■□□□ 1.23
PRPF4-202ENST00000374199 DCAF8L2P0C7V8 631 aa22.7■■□□□ 1.23
PRPF4-202ENST00000374199 SCRIBQ14160 1630 aa22.7■■□□□ 1.22
PRPF4-202ENST00000374199 UNC13AQ9UPW8 1703 aa22.52■■□□□ 1.2
PRPF4-202ENST00000374199 RSF1Q96T23 1441 aaPredicted RBP22.21■■□□□ 1.15
PRPF4-202ENST00000374199 BICRAQ9NZM4 1560 aa22.2■■□□□ 1.15
PRPF4-202ENST00000374199 SUPT5HO00267 1087 aaKnown RBP22.14■■□□□ 1.13
PRPF4-202ENST00000374199 CECR2Q9BXF3 1484 aa22.07■■□□□ 1.12
PRPF4-202ENST00000374199 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
PRPF4-202ENST00000374199 BAZ1AQ9NRL2 1556 aaPredicted RBP22.04■■□□□ 1.12
PRPF4-202ENST00000374199 SMARCA4P51532 1647 aa21.96■■□□□ 1.11
PRPF4-202ENST00000374199 WIZO95785 1651 aa21.89■■□□□ 1.1
PRPF4-202ENST00000374199 PEG3Q9GZU2 1588 aa21.87■■□□□ 1.09
PRPF4-202ENST00000374199 TOP2AP11388 1531 aaKnown RBP21.75■■□□□ 1.07
PRPF4-202ENST00000374199 EIF4G1Q04637 1599 aaKnown RBP21.72■■□□□ 1.07
PRPF4-202ENST00000374199 CHIC1Q5VXU3 224 aa21.64■■□□□ 1.05
PRPF4-202ENST00000374199 SMARCA2P51531 1590 aa21.56■■□□□ 1.04
PRPF4-202ENST00000374199 PABPN1Q86U42 306 aaKnown RBP eCLIP21.47■■□□□ 1.03
PRPF4-202ENST00000374199 ATAD2BQ9ULI0 1458 aa21.44■■□□□ 1.02
PRPF4-202ENST00000374199 CCDC88BA6NC98 1476 aa21.41■■□□□ 1.02
PRPF4-202ENST00000374199 HMGXB3Q12766 1538 aa21.36■■□□□ 1.01
PRPF4-202ENST00000374199 NCAPD3P42695 1498 aa21.27■■□□□ 1
PRPF4-202ENST00000374199 BAZ1BQ9UIG0 1483 aaKnown RBP21.23■□□□□ 0.99
PRPF4-202ENST00000374199 PRDM2Q13029 1718 aa21.02■□□□□ 0.96
PRPF4-202ENST00000374199 ABCC8Q09428 1581 aa20.98■□□□□ 0.95
PRPF4-202ENST00000374199 CC2D2AQ9P2K1 1620 aa20.96■□□□□ 0.95
PRPF4-202ENST00000374199 TRIM41Q8WV44 630 aa20.91■□□□□ 0.94
PRPF4-202ENST00000374199 BIVM-ERCC5R4GMW8 1640 aa20.88■□□□□ 0.93
PRPF4-202ENST00000374199 CFTRP13569 1480 aa20.86■□□□□ 0.93
PRPF4-202ENST00000374199 SYNJ1O43426 1573 aa20.86■□□□□ 0.93
PRPF4-202ENST00000374199 TOP2BQ02880 1626 aa20.82■□□□□ 0.92
PRPF4-202ENST00000374199 WRNQ14191 1432 aaPredicted RBP eCLIP20.8■□□□□ 0.92
PRPF4-202ENST00000374199 EEA1Q15075 1411 aa20.75■□□□□ 0.91
PRPF4-202ENST00000374199 LOC105371045A0A1W2PR82 267 aa20.64■□□□□ 0.89
PRPF4-202ENST00000374199 CUX1P39880 1505 aa20.62■□□□□ 0.89
PRPF4-202ENST00000374199 SOGA1O94964 1423 aa20.6■□□□□ 0.89
PRPF4-202ENST00000374199 KIF21BO75037 1637 aa20.6■□□□□ 0.89
PRPF4-202ENST00000374199 CADPSQ9ULU8 1353 aa20.6■□□□□ 0.89
PRPF4-202ENST00000374199 RUSC2Q8N2Y8 1516 aa20.54■□□□□ 0.88
PRPF4-202ENST00000374199 LAMC3Q9Y6N6 1575 aa20.52■□□□□ 0.88
PRPF4-202ENST00000374199 TNIKQ9UKE5 1360 aa20.4■□□□□ 0.86
PRPF4-202ENST00000374199 ERICH3Q5RHP9 1530 aa20.39■□□□□ 0.86
PRPF4-202ENST00000374199 GOLGA3Q08378 1498 aa20.39■□□□□ 0.85
PRPF4-202ENST00000374199 CEP164Q9UPV0 1460 aa20.39■□□□□ 0.85
PRPF4-202ENST00000374199 DNMBPQ6XZF7 1577 aa20.38■□□□□ 0.85
PRPF4-202ENST00000374199 FANCD2Q9BXW9 1451 aa20.37■□□□□ 0.85
PRPF4-202ENST00000374199 CSRNP3Q8WYN3 585 aa20.36■□□□□ 0.85
PRPF4-202ENST00000374199 PRXQ9BXM0 1461 aa20.34■□□□□ 0.85
PRPF4-202ENST00000374199 FAM9AQ8IZU1 332 aaPredicted RBP20.33■□□□□ 0.84
PRPF4-202ENST00000374199 WDR97A6NE52 1622 aa20.33■□□□□ 0.84
PRPF4-202ENST00000374199 NESP48681 1621 aa20.28■□□□□ 0.84
PRPF4-202ENST00000374199 FGD5Q6ZNL6 1462 aa20.25■□□□□ 0.83
PRPF4-202ENST00000374199 TOPBP1Q92547 1522 aa20.25■□□□□ 0.83
PRPF4-202ENST00000374199 CEP162Q5TB80 1403 aa20.25■□□□□ 0.83
PRPF4-202ENST00000374199 KIF21AQ7Z4S6 1674 aa20.24■□□□□ 0.83
PRPF4-202ENST00000374199 KIF27Q86VH2 1401 aa20.22■□□□□ 0.83
PRPF4-202ENST00000374199 RAPGEF2Q9Y4G8 1499 aa20.21■□□□□ 0.83
PRPF4-202ENST00000374199 ABCA10Q8WWZ4 1543 aa20.21■□□□□ 0.83
PRPF4-202ENST00000374199 URB2Q14146 1524 aaKnown RBP20.19■□□□□ 0.82
PRPF4-202ENST00000374199 POLA1P09884 1462 aaPredicted RBP20.16■□□□□ 0.82
PRPF4-202ENST00000374199 PDS5BQ9NTI5 1447 aa20.15■□□□□ 0.82
PRPF4-202ENST00000374199 ABCA5Q8WWZ7 1642 aa20.13■□□□□ 0.81
PRPF4-202ENST00000374199 DNAJC5BQ9UF47 199 aa20.1■□□□□ 0.81
PRPF4-202ENST00000374199 TARBP1Q13395 1621 aaKnown RBP20.09■□□□□ 0.81
PRPF4-202ENST00000374199 CUL7Q14999 1698 aa20.08■□□□□ 0.8
PRPF4-202ENST00000374199 IGF1RP08069 1367 aa20.07■□□□□ 0.8
PRPF4-202ENST00000374199 CUX2O14529 1486 aa20.07■□□□□ 0.8
PRPF4-202ENST00000374199 TRIM26Q12899 539 aaPredicted RBP20.02■□□□□ 0.79
PRPF4-202ENST00000374199 WDR62O43379 1518 aa20■□□□□ 0.79
PRPF4-202ENST00000374199 CLIP1P30622 1438 aa19.98■□□□□ 0.79
PRPF4-202ENST00000374199 RAD54L2Q9Y4B4 1467 aa19.98■□□□□ 0.79
PRPF4-202ENST00000374199 MRC2Q9UBG0 1479 aa19.96■□□□□ 0.79
PRPF4-202ENST00000374199 VPS8Q8N3P4 1428 aa19.95■□□□□ 0.78
PRPF4-202ENST00000374199 ARAP1Q96P48 1450 aa19.94■□□□□ 0.78
PRPF4-202ENST00000374199 THOC2Q8NI27 1593 aaKnown RBP19.92■□□□□ 0.78
PRPF4-202ENST00000374199 CTTNBP2Q8WZ74 1663 aa19.91■□□□□ 0.78
PRPF4-202ENST00000374199 PBRM1Q86U86 1689 aa19.9■□□□□ 0.78
PRPF4-202ENST00000374199 PCGF6Q9BYE7 350 aa19.88■□□□□ 0.77
PRPF4-202ENST00000374199 CARMIL1Q5VZK9 1371 aa19.87■□□□□ 0.77
PRPF4-202ENST00000374199 UBTFP17480 764 aaKnown RBP19.87■□□□□ 0.77
PRPF4-202ENST00000374199 ARHGAP35Q9NRY4 1499 aa19.85■□□□□ 0.77
PRPF4-202ENST00000374199 EHMT2Q96KQ7 1210 aa19.85■□□□□ 0.77
PRPF4-202ENST00000374199 GAPVD1Q14C86 1478 aa19.81■□□□□ 0.76
PRPF4-202ENST00000374199 EFCAB5A4FU69 1503 aa19.78■□□□□ 0.76
PRPF4-202ENST00000374199 MAP3K1Q13233 1512 aa19.78■□□□□ 0.76
PRPF4-202ENST00000374199 ADAMTS12P58397 1594 aa19.77■□□□□ 0.76
PRPF4-202ENST00000374199 IFT140Q96RY7 1462 aa19.77■□□□□ 0.76
PRPF4-202ENST00000374199 HRCP23327 699 aa19.76■□□□□ 0.75
PRPF4-202ENST00000374199 SAMD9Q5K651 1589 aa19.76■□□□□ 0.75
PRPF4-202ENST00000374199 CFAP43Q8NDM7 1665 aa19.69■□□□□ 0.74
PRPF4-202ENST00000374199 AQRO60306 1485 aaKnown RBP eCLIP19.67■□□□□ 0.741e-6■■■■□ 23.1
PRPF4-202ENST00000374199 EIF4G3O43432 1585 aaKnown RBP19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms