RNA–Protein interactions for RNA: ENST00000374014.3

LINC00474-201, long intergenic non-protein coding RNA 474, humanhuman

TSL 1 (best) BASIC

Gene LINC00474, Length 769 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00474-201ENST00000374014 AEBP2Q6ZN18 517 aaPredicted RBP27.57■■■□□ 2
LINC00474-201ENST00000374014 CHIC1Q5VXU3 224 aa26.08■■□□□ 1.77
LINC00474-201ENST00000374014 SENP3Q9H4L4 574 aaPredicted RBP23.54■■□□□ 1.36
LINC00474-201ENST00000374014 PHF23Q9BUL5 403 aaPredicted RBP23.22■■□□□ 1.31
LINC00474-201ENST00000374014 FOXD1Q16676 465 aa21.94■■□□□ 1.1
LINC00474-201ENST00000374014 PLPPR3Q6T4P5 718 aa20.79■□□□□ 0.92
LINC00474-201ENST00000374014 MSH5O43196 834 aa20.58■□□□□ 0.89
LINC00474-201ENST00000374014 PIAS4Q8N2W9 510 aaPredicted RBP20.48■□□□□ 0.87
LINC00474-201ENST00000374014 PPP6R1Q9UPN7 881 aa20.45■□□□□ 0.86
LINC00474-201ENST00000374014 ADRA2BP18089 450 aa20.38■□□□□ 0.85
LINC00474-201ENST00000374014 POTEDQ86YR6 584 aa20.25■□□□□ 0.83
LINC00474-201ENST00000374014 MAPK8IP2Q13387 824 aaPredicted RBP18.75■□□□□ 0.59
LINC00474-201ENST00000374014 DMRT2Q9Y5R5 561 aa18.65■□□□□ 0.58
LINC00474-201ENST00000374014 SCAF1Q9H7N4 1312 aaKnown RBP18.65■□□□□ 0.58
LINC00474-201ENST00000374014 PPP4R3CPQ6ZMV5 832 aa18.22■□□□□ 0.51
LINC00474-201ENST00000374014 HOXD11P31277 338 aaPredicted RBP17.92■□□□□ 0.46
LINC00474-201ENST00000374014 CNKSR2Q8WXI2 1034 aa17.9■□□□□ 0.46
LINC00474-201ENST00000374014 DCAF8L1A6NGE4 600 aa17.89■□□□□ 0.45
LINC00474-201ENST00000374014 RNF216Q9NWF9 866 aaPredicted RBP17.76■□□□□ 0.43
LINC00474-201ENST00000374014 CACNB1Q02641 598 aaPredicted RBP17.72■□□□□ 0.43
LINC00474-201ENST00000374014 RNF39Q9H2S5 420 aa17.55■□□□□ 0.4
LINC00474-201ENST00000374014 NCBP3Q53F19 620 aaKnown RBP17.49■□□□□ 0.39
LINC00474-201ENST00000374014 DNAJC5BQ9UF47 199 aa17.33■□□□□ 0.36
LINC00474-201ENST00000374014 C1QBPQ07021 282 aaKnown RBP17.29■□□□□ 0.36
LINC00474-201ENST00000374014 NPM3O75607 178 aaKnown RBP17.23■□□□□ 0.35
LINC00474-201ENST00000374014 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.08■□□□□ 0.32
LINC00474-201ENST00000374014 KCNA4P22459 653 aa16.81■□□□□ 0.28
LINC00474-201ENST00000374014 U3KPZ7 1027 aaPredicted RBP16.7■□□□□ 0.26
LINC00474-201ENST00000374014 SPINK5Q9NQ38 1064 aaPredicted RBP16.5■□□□□ 0.23
LINC00474-201ENST00000374014 SLC4A2P04920 1241 aa16.49■□□□□ 0.23
LINC00474-201ENST00000374014 CAPN15O75808 1086 aa16.47■□□□□ 0.23
LINC00474-201ENST00000374014 DSG3P32926 999 aa16.41■□□□□ 0.22
LINC00474-201ENST00000374014 APLP2Q06481 763 aa16.23■□□□□ 0.19
LINC00474-201ENST00000374014 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.2■□□□□ 0.18
LINC00474-201ENST00000374014 HNRNPUL2Q1KMD3 747 aaKnown RBP16.2■□□□□ 0.18
LINC00474-201ENST00000374014 TRHP20396 242 aaPredicted RBP16.19■□□□□ 0.18
LINC00474-201ENST00000374014 ZNF219Q9P2Y4 722 aaPredicted RBP16.15■□□□□ 0.18
LINC00474-201ENST00000374014 SAMD1Q6SPF0 538 aaPredicted RBP16.1■□□□□ 0.17
LINC00474-201ENST00000374014 ABCB7O75027 752 aa16.08■□□□□ 0.16
LINC00474-201ENST00000374014 MYCNP04198 464 aaPredicted RBP15.94■□□□□ 0.14
LINC00474-201ENST00000374014 POTEHQ6S545 545 aa15.86■□□□□ 0.13
LINC00474-201ENST00000374014 SLC4A1APQ9BWU0 796 aaKnown RBP15.85■□□□□ 0.13
LINC00474-201ENST00000374014 POLA2Q14181 598 aa15.74■□□□□ 0.11
LINC00474-201ENST00000374014 FOXD4L1Q9NU39 408 aa15.72■□□□□ 0.11
LINC00474-201ENST00000374014 RBM42Q9BTD8 480 aaKnown RBP15.65■□□□□ 0.1
LINC00474-201ENST00000374014 ATF5Q9Y2D1 282 aaPredicted RBP15.58■□□□□ 0.08
LINC00474-201ENST00000374014 ZBTB22O15209 634 aa15.45■□□□□ 0.06
LINC00474-201ENST00000374014 ZBTB12Q9Y330 459 aaPredicted RBP15.39■□□□□ 0.05
LINC00474-201ENST00000374014 CHRDL2Q6WN34 429 aa15.35■□□□□ 0.05
LINC00474-201ENST00000374014 AKT1S1Q96B36 256 aa15.28■□□□□ 0.04
LINC00474-201ENST00000374014 ATXN8OSP0DMR3 200 aa15.26■□□□□ 0.03
LINC00474-201ENST00000374014 OSCARQ8IYS5 282 aa15.23■□□□□ 0.03
LINC00474-201ENST00000374014 REM2Q8IYK8 340 aaPredicted RBP15.14■□□□□ 0.01
LINC00474-201ENST00000374014 FBLN2P98095 1184 aa14.98□□□□□ -0.01
LINC00474-201ENST00000374014 PITPNM1O00562 1244 aa14.96□□□□□ -0.01
LINC00474-201ENST00000374014 PIP4P2Q8N4L2 257 aa14.96□□□□□ -0.01
LINC00474-201ENST00000374014 SPDYE2BA6NHP3 402 aa14.92□□□□□ -0.02
LINC00474-201ENST00000374014 SPDYE6P0CI01 402 aa14.92□□□□□ -0.02
LINC00474-201ENST00000374014 SPDYE2Q495Y8 402 aa14.92□□□□□ -0.02
LINC00474-201ENST00000374014 FXR2P51116 673 aaKnown RBP eCLIP14.86□□□□□ -0.03
LINC00474-201ENST00000374014 MKRN4PQ13434 485 aaPredicted RBP14.85□□□□□ -0.03
LINC00474-201ENST00000374014 SP7Q8TDD2 431 aaPredicted RBP14.81□□□□□ -0.04
LINC00474-201ENST00000374014 HAX1O00165 279 aa14.73□□□□□ -0.05
LINC00474-201ENST00000374014 ZNF692Q9BU19 519 aaPredicted RBP14.73□□□□□ -0.05
LINC00474-201ENST00000374014 SSUH2Q9Y2M2 353 aa14.7□□□□□ -0.06
LINC00474-201ENST00000374014 SPDYE1Q8NFV5 336 aaPredicted RBP14.69□□□□□ -0.06
LINC00474-201ENST00000374014 CLEC11AQ9Y240 323 aa14.67□□□□□ -0.06
LINC00474-201ENST00000374014 CSRNP3Q8WYN3 585 aa14.65□□□□□ -0.06
LINC00474-201ENST00000374014 PRKAR2AP13861 404 aaKnown RBP14.58□□□□□ -0.08
LINC00474-201ENST00000374014 EVX2Q03828 476 aa14.53□□□□□ -0.08
LINC00474-201ENST00000374014 PABPN1Q86U42 306 aaKnown RBP eCLIP14.51□□□□□ -0.09
LINC00474-201ENST00000374014 PRR29P0C7W0 189 aa14.42□□□□□ -0.1
LINC00474-201ENST00000374014 EHMT2Q96KQ7 1210 aa14.4□□□□□ -0.1
LINC00474-201ENST00000374014 C19orf67A6NJJ6 358 aa14.39□□□□□ -0.11
LINC00474-201ENST00000374014 CHADLQ6NUI6 762 aa14.39□□□□□ -0.11
LINC00474-201ENST00000374014 GABBR2O75899 941 aa14.2□□□□□ -0.14
LINC00474-201ENST00000374014 FARP1Q9Y4F1 1045 aaPredicted RBP14.18□□□□□ -0.14
LINC00474-201ENST00000374014 SPDYE4A6NLX3 237 aa14.11□□□□□ -0.15
LINC00474-201ENST00000374014 CD44P16070 742 aaKnown RBP14.11□□□□□ -0.15
LINC00474-201ENST00000374014 STAG3Q9UJ98 1225 aa14.09□□□□□ -0.15
LINC00474-201ENST00000374014 CREBZFQ9NS37 354 aa14.03□□□□□ -0.16
LINC00474-201ENST00000374014 CLCN6P51797 869 aa13.96□□□□□ -0.17
LINC00474-201ENST00000374014 POTEIP0CG38 1075 aa13.9□□□□□ -0.18
LINC00474-201ENST00000374014 LHX8Q68G74 356 aa13.9□□□□□ -0.18
LINC00474-201ENST00000374014 ZNF579Q8NAF0 562 aaKnown RBP13.89□□□□□ -0.19
LINC00474-201ENST00000374014 ZRANB1Q9UGI0 708 aa13.89□□□□□ -0.19
LINC00474-201ENST00000374014 DCBLD2Q96PD2 775 aa13.81□□□□□ -0.2
LINC00474-201ENST00000374014 NPM1P06748 294 aaKnown RBP eCLIP13.78□□□□□ -0.2
LINC00474-201ENST00000374014 MNX1P50219 401 aaPredicted RBP13.77□□□□□ -0.21
LINC00474-201ENST00000374014 PAK3O75914 559 aaPredicted RBP13.76□□□□□ -0.21
LINC00474-201ENST00000374014 PROM2Q8N271 834 aa13.75□□□□□ -0.21
LINC00474-201ENST00000374014 GALR2O43603 387 aaPredicted RBP13.73□□□□□ -0.21
LINC00474-201ENST00000374014 PHF12Q96QT6 1004 aa13.7□□□□□ -0.22
LINC00474-201ENST00000374014 TSPYL2Q9H2G4 693 aaPredicted RBP13.52□□□□□ -0.25
LINC00474-201ENST00000374014 MS4A3Q96HJ5 214 aa13.51□□□□□ -0.25
LINC00474-201ENST00000374014 PELP1Q8IZL8 1130 aaKnown RBP13.48□□□□□ -0.25
LINC00474-201ENST00000374014 MIER1Q8N108 512 aa13.48□□□□□ -0.25
LINC00474-201ENST00000374014 PLEKHG5O94827 1062 aa13.47□□□□□ -0.25
LINC00474-201ENST00000374014 CCDC61Q9Y6R9 512 aa13.46□□□□□ -0.25
LINC00474-201ENST00000374014 POTEB2H3BUK9 544 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms