RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 AEBP2Q6ZN18 517 aaPredicted RBP27.94■■■□□ 2.06
RNU4-28P-201ENST00000364739 CHIC1Q5VXU3 224 aa26.43■■□□□ 1.82
RNU4-28P-201ENST00000364739 SENP3Q9H4L4 574 aaPredicted RBP23.92■■□□□ 1.42
RNU4-28P-201ENST00000364739 PHF23Q9BUL5 403 aaPredicted RBP23.55■■□□□ 1.36
RNU4-28P-201ENST00000364739 FOXD1Q16676 465 aa22.26■■□□□ 1.15
RNU4-28P-201ENST00000364739 PLPPR3Q6T4P5 718 aa21.06■□□□□ 0.96
RNU4-28P-201ENST00000364739 MSH5O43196 834 aa20.97■□□□□ 0.95
RNU4-28P-201ENST00000364739 PIAS4Q8N2W9 510 aaPredicted RBP20.77■□□□□ 0.92
RNU4-28P-201ENST00000364739 POTEDQ86YR6 584 aa20.68■□□□□ 0.9
RNU4-28P-201ENST00000364739 PPP6R1Q9UPN7 881 aa20.66■□□□□ 0.9
RNU4-28P-201ENST00000364739 ADRA2BP18089 450 aa20.58■□□□□ 0.89
RNU4-28P-201ENST00000364739 MAPK8IP2Q13387 824 aaPredicted RBP18.94■□□□□ 0.62
RNU4-28P-201ENST00000364739 DMRT2Q9Y5R5 561 aa18.94■□□□□ 0.62
RNU4-28P-201ENST00000364739 SCAF1Q9H7N4 1312 aaKnown RBP18.94■□□□□ 0.62
RNU4-28P-201ENST00000364739 PPP4R3CPQ6ZMV5 832 aa18.43■□□□□ 0.54
RNU4-28P-201ENST00000364739 HOXD11P31277 338 aaPredicted RBP18.19■□□□□ 0.5
RNU4-28P-201ENST00000364739 CNKSR2Q8WXI2 1034 aa18.13■□□□□ 0.49
RNU4-28P-201ENST00000364739 DCAF8L1A6NGE4 600 aa18.1■□□□□ 0.49
RNU4-28P-201ENST00000364739 CACNB1Q02641 598 aaPredicted RBP18.04■□□□□ 0.48
RNU4-28P-201ENST00000364739 RNF216Q9NWF9 866 aaPredicted RBP18.01■□□□□ 0.47
RNU4-28P-201ENST00000364739 KCNA4P22459 653 aa17.94■□□□□ 0.46
RNU4-28P-201ENST00000364739 RNF39Q9H2S5 420 aa17.85■□□□□ 0.45
RNU4-28P-201ENST00000364739 NCBP3Q53F19 620 aaKnown RBP17.83■□□□□ 0.44
RNU4-28P-201ENST00000364739 DNAJC5BQ9UF47 199 aa17.68■□□□□ 0.42
RNU4-28P-201ENST00000364739 NPM3O75607 178 aaKnown RBP17.67■□□□□ 0.42
RNU4-28P-201ENST00000364739 C1QBPQ07021 282 aaKnown RBP17.61■□□□□ 0.41
RNU4-28P-201ENST00000364739 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.3■□□□□ 0.36
RNU4-28P-201ENST00000364739 SLC4A1APQ9BWU0 796 aaKnown RBP17.01■□□□□ 0.31
RNU4-28P-201ENST00000364739 U3KPZ7 1027 aaPredicted RBP16.91■□□□□ 0.3
RNU4-28P-201ENST00000364739 SLC4A2P04920 1241 aa16.73■□□□□ 0.27
RNU4-28P-201ENST00000364739 CAPN15O75808 1086 aa16.68■□□□□ 0.26
RNU4-28P-201ENST00000364739 SPINK5Q9NQ38 1064 aaPredicted RBP16.68■□□□□ 0.26
RNU4-28P-201ENST00000364739 DSG3P32926 999 aa16.65■□□□□ 0.26
RNU4-28P-201ENST00000364739 ZBTB22O15209 634 aa16.53■□□□□ 0.24
RNU4-28P-201ENST00000364739 APLP2Q06481 763 aa16.51■□□□□ 0.23
RNU4-28P-201ENST00000364739 EHMT2Q96KQ7 1210 aa16.5■□□□□ 0.23
RNU4-28P-201ENST00000364739 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.45■□□□□ 0.22
RNU4-28P-201ENST00000364739 HNRNPUL2Q1KMD3 747 aaKnown RBP16.45■□□□□ 0.22
RNU4-28P-201ENST00000364739 FOXD4L1Q9NU39 408 aa16.44■□□□□ 0.22
RNU4-28P-201ENST00000364739 ZNF219Q9P2Y4 722 aaPredicted RBP16.4■□□□□ 0.22
RNU4-28P-201ENST00000364739 TRHP20396 242 aaPredicted RBP16.36■□□□□ 0.21
RNU4-28P-201ENST00000364739 SAMD1Q6SPF0 538 aaPredicted RBP16.34■□□□□ 0.21
RNU4-28P-201ENST00000364739 CSRNP3Q8WYN3 585 aa16.32■□□□□ 0.2
RNU4-28P-201ENST00000364739 ABCB7O75027 752 aa16.25■□□□□ 0.19
RNU4-28P-201ENST00000364739 MYCNP04198 464 aaPredicted RBP16.25■□□□□ 0.19
RNU4-28P-201ENST00000364739 POTEHQ6S545 545 aa16.18■□□□□ 0.18
RNU4-28P-201ENST00000364739 ATF5Q9Y2D1 282 aaPredicted RBP15.98■□□□□ 0.15
RNU4-28P-201ENST00000364739 RBM42Q9BTD8 480 aaKnown RBP15.94■□□□□ 0.14
RNU4-28P-201ENST00000364739 POLA2Q14181 598 aa15.9■□□□□ 0.14
RNU4-28P-201ENST00000364739 ATXN8OSP0DMR3 200 aa15.81■□□□□ 0.12
RNU4-28P-201ENST00000364739 ZBTB12Q9Y330 459 aaPredicted RBP15.65■□□□□ 0.1
RNU4-28P-201ENST00000364739 CHRDL2Q6WN34 429 aa15.61■□□□□ 0.09
RNU4-28P-201ENST00000364739 AKT1S1Q96B36 256 aa15.53■□□□□ 0.08
RNU4-28P-201ENST00000364739 OSCARQ8IYS5 282 aa15.4■□□□□ 0.06
RNU4-28P-201ENST00000364739 REM2Q8IYK8 340 aaPredicted RBP15.34■□□□□ 0.05
RNU4-28P-201ENST00000364739 MKRN4PQ13434 485 aaPredicted RBP15.24■□□□□ 0.03
RNU4-28P-201ENST00000364739 PIP4P2Q8N4L2 257 aa15.19■□□□□ 0.02
RNU4-28P-201ENST00000364739 PITPNM1O00562 1244 aa15.17■□□□□ 0.02
RNU4-28P-201ENST00000364739 FBLN2P98095 1184 aa15.17■□□□□ 0.02
RNU4-28P-201ENST00000364739 SPDYE2BA6NHP3 402 aa15.13■□□□□ 0.01
RNU4-28P-201ENST00000364739 SPDYE6P0CI01 402 aa15.13■□□□□ 0.01
RNU4-28P-201ENST00000364739 SPDYE2Q495Y8 402 aa15.13■□□□□ 0.01
RNU4-28P-201ENST00000364739 SP7Q8TDD2 431 aaPredicted RBP15.11■□□□□ 0.01
RNU4-28P-201ENST00000364739 FXR2P51116 673 aaKnown RBP eCLIP15.1■□□□□ 0.01
RNU4-28P-201ENST00000364739 HAX1O00165 279 aa14.95□□□□□ -0.02
RNU4-28P-201ENST00000364739 SSUH2Q9Y2M2 353 aa14.91□□□□□ -0.02
RNU4-28P-201ENST00000364739 SPDYE1Q8NFV5 336 aaPredicted RBP14.89□□□□□ -0.03
RNU4-28P-201ENST00000364739 ZNF692Q9BU19 519 aaPredicted RBP14.89□□□□□ -0.03
RNU4-28P-201ENST00000364739 CLEC11AQ9Y240 323 aa14.82□□□□□ -0.04
RNU4-28P-201ENST00000364739 SPDYE4A6NLX3 237 aa14.8□□□□□ -0.04
RNU4-28P-201ENST00000364739 PRKAR2AP13861 404 aaKnown RBP14.78□□□□□ -0.04
RNU4-28P-201ENST00000364739 FKBP8Q14318 412 aa14.76□□□□□ -0.05
RNU4-28P-201ENST00000364739 EVX2Q03828 476 aa14.71□□□□□ -0.05
RNU4-28P-201ENST00000364739 PABPN1Q86U42 306 aaKnown RBP eCLIP14.66□□□□□ -0.06
RNU4-28P-201ENST00000364739 C19orf67A6NJJ6 358 aa14.62□□□□□ -0.07
RNU4-28P-201ENST00000364739 PRR29P0C7W0 189 aa14.59□□□□□ -0.07
RNU4-28P-201ENST00000364739 CHADLQ6NUI6 762 aa14.54□□□□□ -0.08
RNU4-28P-201ENST00000364739 PROM2Q8N271 834 aa14.47□□□□□ -0.09
RNU4-28P-201ENST00000364739 GABBR2O75899 941 aa14.42□□□□□ -0.1
RNU4-28P-201ENST00000364739 FARP1Q9Y4F1 1045 aaPredicted RBP14.36□□□□□ -0.11
RNU4-28P-201ENST00000364739 CD44P16070 742 aaKnown RBP14.31□□□□□ -0.12
RNU4-28P-201ENST00000364739 STAG3Q9UJ98 1225 aa14.28□□□□□ -0.12
RNU4-28P-201ENST00000364739 CLCN6P51797 869 aa14.25□□□□□ -0.13
RNU4-28P-201ENST00000364739 CREBZFQ9NS37 354 aa14.18□□□□□ -0.14
RNU4-28P-201ENST00000364739 LHX8Q68G74 356 aa14.15□□□□□ -0.14
RNU4-28P-201ENST00000364739 FBXO3Q9UK99 471 aa14.13□□□□□ -0.15
RNU4-28P-201ENST00000364739 ZNF579Q8NAF0 562 aaKnown RBP14.11□□□□□ -0.15
RNU4-28P-201ENST00000364739 POTEIP0CG38 1075 aa14.09□□□□□ -0.15
RNU4-28P-201ENST00000364739 MIER1Q8N108 512 aa14.08□□□□□ -0.16
RNU4-28P-201ENST00000364739 ZRANB1Q9UGI0 708 aa14.07□□□□□ -0.16
RNU4-28P-201ENST00000364739 PLCD3Q8N3E9 789 aa14.02□□□□□ -0.17
RNU4-28P-201ENST00000364739 VASPP50552 380 aaPredicted RBP14.01□□□□□ -0.17
RNU4-28P-201ENST00000364739 DCBLD2Q96PD2 775 aa14.01□□□□□ -0.17
RNU4-28P-201ENST00000364739 PAK3O75914 559 aaPredicted RBP13.96□□□□□ -0.17
RNU4-28P-201ENST00000364739 NPM1P06748 294 aaKnown RBP eCLIP13.95□□□□□ -0.18
RNU4-28P-201ENST00000364739 MNX1P50219 401 aaPredicted RBP13.93□□□□□ -0.18
RNU4-28P-201ENST00000364739 GALR2O43603 387 aaPredicted RBP13.89□□□□□ -0.19
RNU4-28P-201ENST00000364739 PLEKHG5O94827 1062 aa13.89□□□□□ -0.19
RNU4-28P-201ENST00000364739 IFNLR1Q8IU57 520 aaPredicted RBP13.88□□□□□ -0.19
RNU4-28P-201ENST00000364739 KLHL34Q8N239 644 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms