RNA–Protein interactions for RNA: ENST00000364351.1

RNU4-40P-201, Transcript of RNA, U4 small nuclear 40, pseudogene, humanhuman

BASIC

Gene RNU4-40P, Length 143 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-40P-201ENST00000364351 AEBP2Q6ZN18 517 aaPredicted RBP33.67■■■□□ 2.98
RNU4-40P-201ENST00000364351 CHIC1Q5VXU3 224 aa32.08■■■□□ 2.73
RNU4-40P-201ENST00000364351 SENP3Q9H4L4 574 aaPredicted RBP28.7■■■□□ 2.18
RNU4-40P-201ENST00000364351 PHF23Q9BUL5 403 aaPredicted RBP28.37■■■□□ 2.13
RNU4-40P-201ENST00000364351 FOXD1Q16676 465 aa26.74■■□□□ 1.87
RNU4-40P-201ENST00000364351 PLPPR3Q6T4P5 718 aa25.7■■□□□ 1.7
RNU4-40P-201ENST00000364351 PPP6R1Q9UPN7 881 aa25.12■■□□□ 1.61
RNU4-40P-201ENST00000364351 ADRA2BP18089 450 aa25.06■■□□□ 1.6
RNU4-40P-201ENST00000364351 PIAS4Q8N2W9 510 aaPredicted RBP25.04■■□□□ 1.6
RNU4-40P-201ENST00000364351 MSH5O43196 834 aa24.97■■□□□ 1.59
RNU4-40P-201ENST00000364351 POTEDQ86YR6 584 aa24.18■■□□□ 1.46
RNU4-40P-201ENST00000364351 MAPK8IP2Q13387 824 aaPredicted RBP22.99■■□□□ 1.27
RNU4-40P-201ENST00000364351 SCAF1Q9H7N4 1312 aaKnown RBP22.91■■□□□ 1.26
RNU4-40P-201ENST00000364351 DMRT2Q9Y5R5 561 aa22.77■■□□□ 1.24
RNU4-40P-201ENST00000364351 PPP4R3CPQ6ZMV5 832 aa22.57■■□□□ 1.2
RNU4-40P-201ENST00000364351 CNKSR2Q8WXI2 1034 aa22.09■■□□□ 1.13
RNU4-40P-201ENST00000364351 HOXD11P31277 338 aaPredicted RBP21.96■■□□□ 1.11
RNU4-40P-201ENST00000364351 DCAF8L1A6NGE4 600 aa21.93■■□□□ 1.1
RNU4-40P-201ENST00000364351 RNF216Q9NWF9 866 aaPredicted RBP21.85■■□□□ 1.09
RNU4-40P-201ENST00000364351 NCBP3Q53F19 620 aaKnown RBP21.74■■□□□ 1.07
RNU4-40P-201ENST00000364351 NPM3O75607 178 aaKnown RBP21.41■■□□□ 1.02
RNU4-40P-201ENST00000364351 CACNB1Q02641 598 aaPredicted RBP21.41■■□□□ 1.02
RNU4-40P-201ENST00000364351 RNF39Q9H2S5 420 aa21.3■■□□□ 1
RNU4-40P-201ENST00000364351 DNAJC5BQ9UF47 199 aa21.13■□□□□ 0.97
RNU4-40P-201ENST00000364351 KCNA4P22459 653 aa21.12■□□□□ 0.97
RNU4-40P-201ENST00000364351 C1QBPQ07021 282 aaKnown RBP21.01■□□□□ 0.95
RNU4-40P-201ENST00000364351 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.01■□□□□ 0.95
RNU4-40P-201ENST00000364351 U3KPZ7 1027 aaPredicted RBP20.52■□□□□ 0.88
RNU4-40P-201ENST00000364351 SLC4A2P04920 1241 aa20.41■□□□□ 0.86
RNU4-40P-201ENST00000364351 SPINK5Q9NQ38 1064 aaPredicted RBP20.23■□□□□ 0.83
RNU4-40P-201ENST00000364351 CAPN15O75808 1086 aa20.21■□□□□ 0.83
RNU4-40P-201ENST00000364351 DSG3P32926 999 aa20.01■□□□□ 0.79
RNU4-40P-201ENST00000364351 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.98■□□□□ 0.79
RNU4-40P-201ENST00000364351 HNRNPUL2Q1KMD3 747 aaKnown RBP19.98■□□□□ 0.79
RNU4-40P-201ENST00000364351 APLP2Q06481 763 aa19.97■□□□□ 0.79
RNU4-40P-201ENST00000364351 SLC4A1APQ9BWU0 796 aaKnown RBP19.97■□□□□ 0.79
RNU4-40P-201ENST00000364351 TRHP20396 242 aaPredicted RBP19.93■□□□□ 0.78
RNU4-40P-201ENST00000364351 SAMD1Q6SPF0 538 aaPredicted RBP19.88■□□□□ 0.77
RNU4-40P-201ENST00000364351 ZNF219Q9P2Y4 722 aaPredicted RBP19.83■□□□□ 0.77
RNU4-40P-201ENST00000364351 MYCNP04198 464 aaPredicted RBP19.79■□□□□ 0.76
RNU4-40P-201ENST00000364351 ABCB7O75027 752 aa19.76■□□□□ 0.75
RNU4-40P-201ENST00000364351 FOXD4L1Q9NU39 408 aa19.65■□□□□ 0.74
RNU4-40P-201ENST00000364351 ZBTB22O15209 634 aa19.4■□□□□ 0.7
RNU4-40P-201ENST00000364351 POLA2Q14181 598 aa19.4■□□□□ 0.7
RNU4-40P-201ENST00000364351 ATF5Q9Y2D1 282 aaPredicted RBP19.35■□□□□ 0.69
RNU4-40P-201ENST00000364351 RBM42Q9BTD8 480 aaKnown RBP19.09■□□□□ 0.65
RNU4-40P-201ENST00000364351 ATXN8OSP0DMR3 200 aa19.01■□□□□ 0.63
RNU4-40P-201ENST00000364351 POTEHQ6S545 545 aa18.98■□□□□ 0.63
RNU4-40P-201ENST00000364351 ZBTB12Q9Y330 459 aaPredicted RBP18.97■□□□□ 0.63
RNU4-40P-201ENST00000364351 OSCARQ8IYS5 282 aa18.76■□□□□ 0.59
RNU4-40P-201ENST00000364351 AKT1S1Q96B36 256 aa18.68■□□□□ 0.58
RNU4-40P-201ENST00000364351 CHRDL2Q6WN34 429 aa18.63■□□□□ 0.57
RNU4-40P-201ENST00000364351 CSRNP3Q8WYN3 585 aa18.63■□□□□ 0.57
RNU4-40P-201ENST00000364351 FBLN2P98095 1184 aa18.6■□□□□ 0.57
RNU4-40P-201ENST00000364351 REM2Q8IYK8 340 aaPredicted RBP18.52■□□□□ 0.56
RNU4-40P-201ENST00000364351 EHMT2Q96KQ7 1210 aa18.51■□□□□ 0.55
RNU4-40P-201ENST00000364351 MKRN4PQ13434 485 aaPredicted RBP18.45■□□□□ 0.54
RNU4-40P-201ENST00000364351 SPDYE2BA6NHP3 402 aa18.4■□□□□ 0.54
RNU4-40P-201ENST00000364351 SPDYE6P0CI01 402 aa18.4■□□□□ 0.54
RNU4-40P-201ENST00000364351 SPDYE2Q495Y8 402 aa18.4■□□□□ 0.54
RNU4-40P-201ENST00000364351 PITPNM1O00562 1244 aa18.32■□□□□ 0.52
RNU4-40P-201ENST00000364351 ZNF692Q9BU19 519 aaPredicted RBP18.25■□□□□ 0.51
RNU4-40P-201ENST00000364351 PIP4P2Q8N4L2 257 aa18.22■□□□□ 0.51
RNU4-40P-201ENST00000364351 SSUH2Q9Y2M2 353 aa18.15■□□□□ 0.5
RNU4-40P-201ENST00000364351 FXR2P51116 673 aaKnown RBP eCLIP18.11■□□□□ 0.49
RNU4-40P-201ENST00000364351 CLEC11AQ9Y240 323 aa18.09■□□□□ 0.49
RNU4-40P-201ENST00000364351 SPDYE1Q8NFV5 336 aaPredicted RBP18.06■□□□□ 0.48
RNU4-40P-201ENST00000364351 PABPN1Q86U42 306 aaKnown RBP eCLIP17.97■□□□□ 0.47
RNU4-40P-201ENST00000364351 HAX1O00165 279 aa17.91■□□□□ 0.46
RNU4-40P-201ENST00000364351 PRKAR2AP13861 404 aaKnown RBP17.87■□□□□ 0.45
RNU4-40P-201ENST00000364351 SP7Q8TDD2 431 aaPredicted RBP17.84■□□□□ 0.45
RNU4-40P-201ENST00000364351 PRR29P0C7W0 189 aa17.78■□□□□ 0.44
RNU4-40P-201ENST00000364351 CHADLQ6NUI6 762 aa17.72■□□□□ 0.43
RNU4-40P-201ENST00000364351 SPDYE4A6NLX3 237 aa17.67■□□□□ 0.42
RNU4-40P-201ENST00000364351 EVX2Q03828 476 aa17.66■□□□□ 0.42
RNU4-40P-201ENST00000364351 C19orf67A6NJJ6 358 aa17.53■□□□□ 0.4
RNU4-40P-201ENST00000364351 STAG3Q9UJ98 1225 aa17.49■□□□□ 0.39
RNU4-40P-201ENST00000364351 FARP1Q9Y4F1 1045 aaPredicted RBP17.43■□□□□ 0.38
RNU4-40P-201ENST00000364351 CREBZFQ9NS37 354 aa17.33■□□□□ 0.36
RNU4-40P-201ENST00000364351 CD44P16070 742 aaKnown RBP17.3■□□□□ 0.36
RNU4-40P-201ENST00000364351 GABBR2O75899 941 aa17.27■□□□□ 0.36
RNU4-40P-201ENST00000364351 PROM2Q8N271 834 aa17.18■□□□□ 0.34
RNU4-40P-201ENST00000364351 ZRANB1Q9UGI0 708 aa17.1■□□□□ 0.33
RNU4-40P-201ENST00000364351 NPM1P06748 294 aaKnown RBP eCLIP17.04■□□□□ 0.32
RNU4-40P-201ENST00000364351 MNX1P50219 401 aaPredicted RBP17.02■□□□□ 0.32
RNU4-40P-201ENST00000364351 ZNF579Q8NAF0 562 aaKnown RBP17■□□□□ 0.31
RNU4-40P-201ENST00000364351 PAK3O75914 559 aaPredicted RBP16.98■□□□□ 0.31
RNU4-40P-201ENST00000364351 CLCN6P51797 869 aa16.98■□□□□ 0.31
RNU4-40P-201ENST00000364351 FKBP8Q14318 412 aa16.93■□□□□ 0.3
RNU4-40P-201ENST00000364351 POTEIP0CG38 1075 aa16.89■□□□□ 0.29
RNU4-40P-201ENST00000364351 MIER1Q8N108 512 aa16.88■□□□□ 0.29
RNU4-40P-201ENST00000364351 DCBLD2Q96PD2 775 aa16.86■□□□□ 0.29
RNU4-40P-201ENST00000364351 PHF12Q96QT6 1004 aa16.86■□□□□ 0.29
RNU4-40P-201ENST00000364351 PLEKHG5O94827 1062 aa16.84■□□□□ 0.29
RNU4-40P-201ENST00000364351 GALR2O43603 387 aaPredicted RBP16.82■□□□□ 0.28
RNU4-40P-201ENST00000364351 TSPYL2Q9H2G4 693 aaPredicted RBP16.78■□□□□ 0.28
RNU4-40P-201ENST00000364351 LHX8Q68G74 356 aa16.76■□□□□ 0.27
RNU4-40P-201ENST00000364351 PLCD3Q8N3E9 789 aa16.76■□□□□ 0.27
RNU4-40P-201ENST00000364351 MS4A3Q96HJ5 214 aa16.62■□□□□ 0.25
RNU4-40P-201ENST00000364351 CCDC61Q9Y6R9 512 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms