RNA–Protein interactions for RNA: ENST00000362773.1

RNU4-90P-201, Transcript of RNA, U4 small nuclear 90, pseudogene, humanhuman

BASIC

Gene RNU4-90P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-90P-201ENST00000362773 AEBP2Q6ZN18 517 aaPredicted RBP16.13■□□□□ 0.17
RNU4-90P-201ENST00000362773 CHIC1Q5VXU3 224 aa15.32■□□□□ 0.04
RNU4-90P-201ENST00000362773 SENP3Q9H4L4 574 aaPredicted RBP13.68□□□□□ -0.22
RNU4-90P-201ENST00000362773 PHF23Q9BUL5 403 aaPredicted RBP13.53□□□□□ -0.24
RNU4-90P-201ENST00000362773 FOXD1Q16676 465 aa12.79□□□□□ -0.36
RNU4-90P-201ENST00000362773 PLPPR3Q6T4P5 718 aa12.22□□□□□ -0.45
RNU4-90P-201ENST00000362773 PPP6R1Q9UPN7 881 aa12.02□□□□□ -0.49
RNU4-90P-201ENST00000362773 ADRA2BP18089 450 aa11.95□□□□□ -0.5
RNU4-90P-201ENST00000362773 PIAS4Q8N2W9 510 aaPredicted RBP11.93□□□□□ -0.5
RNU4-90P-201ENST00000362773 MSH5O43196 834 aa11.9□□□□□ -0.5
RNU4-90P-201ENST00000362773 POTEDQ86YR6 584 aa11.59□□□□□ -0.55
RNU4-90P-201ENST00000362773 MAPK8IP2Q13387 824 aaPredicted RBP10.98□□□□□ -0.65
RNU4-90P-201ENST00000362773 DMRT2Q9Y5R5 561 aa10.88□□□□□ -0.67
RNU4-90P-201ENST00000362773 SCAF1Q9H7N4 1312 aaKnown RBP10.85□□□□□ -0.67
RNU4-90P-201ENST00000362773 PPP4R3CPQ6ZMV5 832 aa10.74□□□□□ -0.69
RNU4-90P-201ENST00000362773 HOXD11P31277 338 aaPredicted RBP10.51□□□□□ -0.73
RNU4-90P-201ENST00000362773 CNKSR2Q8WXI2 1034 aa10.51□□□□□ -0.73
RNU4-90P-201ENST00000362773 RNF216Q9NWF9 866 aaPredicted RBP10.41□□□□□ -0.74
RNU4-90P-201ENST00000362773 DCAF8L1A6NGE4 600 aa10.37□□□□□ -0.75
RNU4-90P-201ENST00000362773 NCBP3Q53F19 620 aaKnown RBP10.27□□□□□ -0.77
RNU4-90P-201ENST00000362773 NPM3O75607 178 aaKnown RBP10.21□□□□□ -0.77
RNU4-90P-201ENST00000362773 RNF39Q9H2S5 420 aa10.19□□□□□ -0.78
RNU4-90P-201ENST00000362773 CACNB1Q02641 598 aaPredicted RBP10.18□□□□□ -0.78
RNU4-90P-201ENST00000362773 DNAJC5BQ9UF47 199 aa10.11□□□□□ -0.79
RNU4-90P-201ENST00000362773 KCNA4P22459 653 aa10.05□□□□□ -0.8
RNU4-90P-201ENST00000362773 C1QBPQ07021 282 aaKnown RBP10.02□□□□□ -0.81
RNU4-90P-201ENST00000362773 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.95□□□□□ -0.82
RNU4-90P-201ENST00000362773 U3KPZ7 1027 aaPredicted RBP9.81□□□□□ -0.84
RNU4-90P-201ENST00000362773 SLC4A2P04920 1241 aa9.76□□□□□ -0.85
RNU4-90P-201ENST00000362773 SPINK5Q9NQ38 1064 aaPredicted RBP9.65□□□□□ -0.86
RNU4-90P-201ENST00000362773 CAPN15O75808 1086 aa9.58□□□□□ -0.88
RNU4-90P-201ENST00000362773 DSG3P32926 999 aa9.56□□□□□ -0.88
RNU4-90P-201ENST00000362773 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.46□□□□□ -0.9
RNU4-90P-201ENST00000362773 HNRNPUL2Q1KMD3 747 aaKnown RBP9.46□□□□□ -0.9
RNU4-90P-201ENST00000362773 SLC4A1APQ9BWU0 796 aaKnown RBP9.46□□□□□ -0.9
RNU4-90P-201ENST00000362773 TRHP20396 242 aaPredicted RBP9.45□□□□□ -0.9
RNU4-90P-201ENST00000362773 APLP2Q06481 763 aa9.44□□□□□ -0.9
RNU4-90P-201ENST00000362773 SAMD1Q6SPF0 538 aaPredicted RBP9.43□□□□□ -0.9
RNU4-90P-201ENST00000362773 ZNF219Q9P2Y4 722 aaPredicted RBP9.41□□□□□ -0.9
RNU4-90P-201ENST00000362773 MYCNP04198 464 aaPredicted RBP9.4□□□□□ -0.9
RNU4-90P-201ENST00000362773 ABCB7O75027 752 aa9.39□□□□□ -0.91
RNU4-90P-201ENST00000362773 FOXD4L1Q9NU39 408 aa9.34□□□□□ -0.91
RNU4-90P-201ENST00000362773 ZBTB22O15209 634 aa9.28□□□□□ -0.92
RNU4-90P-201ENST00000362773 ATF5Q9Y2D1 282 aaPredicted RBP9.24□□□□□ -0.93
RNU4-90P-201ENST00000362773 POLA2Q14181 598 aa9.21□□□□□ -0.94
RNU4-90P-201ENST00000362773 POTEHQ6S545 545 aa9.08□□□□□ -0.96
RNU4-90P-201ENST00000362773 RBM42Q9BTD8 480 aaKnown RBP9.07□□□□□ -0.96
RNU4-90P-201ENST00000362773 ATXN8OSP0DMR3 200 aa9.03□□□□□ -0.96
RNU4-90P-201ENST00000362773 ZBTB12Q9Y330 459 aaPredicted RBP8.99□□□□□ -0.97
RNU4-90P-201ENST00000362773 OSCARQ8IYS5 282 aa8.94□□□□□ -0.98
RNU4-90P-201ENST00000362773 AKT1S1Q96B36 256 aa8.89□□□□□ -0.99
RNU4-90P-201ENST00000362773 CHRDL2Q6WN34 429 aa8.88□□□□□ -0.99
RNU4-90P-201ENST00000362773 CSRNP3Q8WYN3 585 aa8.86□□□□□ -0.99
RNU4-90P-201ENST00000362773 MKRN4PQ13434 485 aaPredicted RBP8.82□□□□□ -1
RNU4-90P-201ENST00000362773 REM2Q8IYK8 340 aaPredicted RBP8.82□□□□□ -1
RNU4-90P-201ENST00000362773 FBLN2P98095 1184 aa8.78□□□□□ -1
RNU4-90P-201ENST00000362773 SPDYE2BA6NHP3 402 aa8.74□□□□□ -1.01
RNU4-90P-201ENST00000362773 PITPNM1O00562 1244 aa8.74□□□□□ -1.01
RNU4-90P-201ENST00000362773 SPDYE6P0CI01 402 aa8.74□□□□□ -1.01
RNU4-90P-201ENST00000362773 SPDYE2Q495Y8 402 aa8.74□□□□□ -1.01
RNU4-90P-201ENST00000362773 EHMT2Q96KQ7 1210 aa8.73□□□□□ -1.01
RNU4-90P-201ENST00000362773 PIP4P2Q8N4L2 257 aa8.69□□□□□ -1.02
RNU4-90P-201ENST00000362773 SSUH2Q9Y2M2 353 aa8.67□□□□□ -1.02
RNU4-90P-201ENST00000362773 FXR2P51116 673 aaKnown RBP eCLIP8.66□□□□□ -1.02
RNU4-90P-201ENST00000362773 ZNF692Q9BU19 519 aaPredicted RBP8.64□□□□□ -1.03
RNU4-90P-201ENST00000362773 SPDYE1Q8NFV5 336 aaPredicted RBP8.57□□□□□ -1.04
RNU4-90P-201ENST00000362773 CLEC11AQ9Y240 323 aa8.55□□□□□ -1.04
RNU4-90P-201ENST00000362773 PABPN1Q86U42 306 aaKnown RBP eCLIP8.53□□□□□ -1.04
RNU4-90P-201ENST00000362773 SP7Q8TDD2 431 aaPredicted RBP8.52□□□□□ -1.05
RNU4-90P-201ENST00000362773 PRKAR2AP13861 404 aaKnown RBP8.49□□□□□ -1.05
RNU4-90P-201ENST00000362773 HAX1O00165 279 aa8.48□□□□□ -1.05
RNU4-90P-201ENST00000362773 EVX2Q03828 476 aa8.47□□□□□ -1.05
RNU4-90P-201ENST00000362773 CHADLQ6NUI6 762 aa8.43□□□□□ -1.06
RNU4-90P-201ENST00000362773 PRR29P0C7W0 189 aa8.41□□□□□ -1.06
RNU4-90P-201ENST00000362773 C19orf67A6NJJ6 358 aa8.38□□□□□ -1.07
RNU4-90P-201ENST00000362773 SPDYE4A6NLX3 237 aa8.37□□□□□ -1.07
RNU4-90P-201ENST00000362773 FARP1Q9Y4F1 1045 aaPredicted RBP8.29□□□□□ -1.08
RNU4-90P-201ENST00000362773 CREBZFQ9NS37 354 aa8.26□□□□□ -1.09
RNU4-90P-201ENST00000362773 STAG3Q9UJ98 1225 aa8.26□□□□□ -1.09
RNU4-90P-201ENST00000362773 GABBR2O75899 941 aa8.24□□□□□ -1.09
RNU4-90P-201ENST00000362773 CD44P16070 742 aaKnown RBP8.22□□□□□ -1.09
RNU4-90P-201ENST00000362773 PROM2Q8N271 834 aa8.22□□□□□ -1.09
RNU4-90P-201ENST00000362773 MNX1P50219 401 aaPredicted RBP8.15□□□□□ -1.1
RNU4-90P-201ENST00000362773 POTEIP0CG38 1075 aa8.11□□□□□ -1.11
RNU4-90P-201ENST00000362773 ZNF579Q8NAF0 562 aaKnown RBP8.11□□□□□ -1.11
RNU4-90P-201ENST00000362773 ZRANB1Q9UGI0 708 aa8.11□□□□□ -1.11
RNU4-90P-201ENST00000362773 CLCN6P51797 869 aa8.06□□□□□ -1.12
RNU4-90P-201ENST00000362773 NPM1P06748 294 aaKnown RBP eCLIP8.04□□□□□ -1.12
RNU4-90P-201ENST00000362773 GALR2O43603 387 aaPredicted RBP8.03□□□□□ -1.12
RNU4-90P-201ENST00000362773 PHF12Q96QT6 1004 aa8.03□□□□□ -1.12
RNU4-90P-201ENST00000362773 PAK3O75914 559 aaPredicted RBP8□□□□□ -1.13
RNU4-90P-201ENST00000362773 FKBP8Q14318 412 aa8□□□□□ -1.13
RNU4-90P-201ENST00000362773 LHX8Q68G74 356 aa7.99□□□□□ -1.13
RNU4-90P-201ENST00000362773 DCBLD2Q96PD2 775 aa7.97□□□□□ -1.13
RNU4-90P-201ENST00000362773 MIER1Q8N108 512 aa7.95□□□□□ -1.14
RNU4-90P-201ENST00000362773 TSPYL2Q9H2G4 693 aaPredicted RBP7.94□□□□□ -1.14
RNU4-90P-201ENST00000362773 MS4A3Q96HJ5 214 aa7.93□□□□□ -1.14
RNU4-90P-201ENST00000362773 CCDC61Q9Y6R9 512 aa7.93□□□□□ -1.14
RNU4-90P-201ENST00000362773 RASEFQ8IZ41 740 aa7.91□□□□□ -1.14
RNU4-90P-201ENST00000362773 PLEKHG5O94827 1062 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms