RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 DCAF8L2P0C7V8 631 aa31.65■■■□□ 2.66
SHANK1-202ENST00000359082 SUPT5HO00267 1087 aaKnown RBP29.97■■■□□ 2.39
SHANK1-202ENST00000359082 EHMT2Q96KQ7 1210 aa29.63■■■□□ 2.33
SHANK1-202ENST00000359082 NISCHQ9Y2I1 1504 aa29.47■■■□□ 2.31
SHANK1-202ENST00000359082 PELP1Q8IZL8 1130 aaKnown RBP29.33■■■□□ 2.29
SHANK1-202ENST00000359082 SHROOM4Q9ULL8 1493 aa29.32■■■□□ 2.28
SHANK1-202ENST00000359082 APLP2Q06481 763 aa28.84■■■□□ 2.21
SHANK1-202ENST00000359082 TTBK1Q5TCY1 1321 aaPredicted RBP28.64■■■□□ 2.18
SHANK1-202ENST00000359082 FAM9AQ8IZU1 332 aaPredicted RBP28.46■■■□□ 2.15
SHANK1-202ENST00000359082 ERICH6Q7L0X2 663 aa28.39■■■□□ 2.14
SHANK1-202ENST00000359082 PCGF6Q9BYE7 350 aa28.23■■■□□ 2.11
SHANK1-202ENST00000359082 RANGAP1P46060 587 aaPredicted RBP28.21■■■□□ 2.11
SHANK1-202ENST00000359082 CCER1Q8TC90 406 aaPredicted RBP28.05■■■□□ 2.08
SHANK1-202ENST00000359082 CENPBP07199 599 aaPredicted RBP28.01■■■□□ 2.07
SHANK1-202ENST00000359082 ATP1B4Q9UN42 357 aaPredicted RBP27.99■■■□□ 2.07
SHANK1-202ENST00000359082 ZEB1P37275 1124 aaPredicted RBP27.7■■■□□ 2.02
SHANK1-202ENST00000359082 YTHDC1Q96MU7 727 aaKnown RBP27.68■■■□□ 2.02
SHANK1-202ENST00000359082 TRIM41Q8WV44 630 aa27.61■■■□□ 2.01
SHANK1-202ENST00000359082 NEFLP07196 543 aa27.6■■■□□ 2.01
SHANK1-202ENST00000359082 MYT1Q01538 1121 aa27.59■■■□□ 2.01
SHANK1-202ENST00000359082 UBTFP17480 764 aaKnown RBP27.51■■□□□ 1.99
SHANK1-202ENST00000359082 PPARGC1BQ86YN6 1023 aaKnown RBP27.28■■□□□ 1.96
SHANK1-202ENST00000359082 POLR3GLQ9BT43 218 aa27.06■■□□□ 1.92
SHANK1-202ENST00000359082 DAXXQ9UER7 740 aaPredicted RBP27.05■■□□□ 1.92
SHANK1-202ENST00000359082 MYT1LQ9UL68 1186 aa27.01■■□□□ 1.91
SHANK1-202ENST00000359082 ITGAEP38570 1179 aa26.92■■□□□ 1.9
SHANK1-202ENST00000359082 CNGB1Q14028 1251 aaPredicted RBP26.86■■□□□ 1.89
SHANK1-202ENST00000359082 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.83■■□□□ 1.89
SHANK1-202ENST00000359082 HNRNPUL2Q1KMD3 747 aaKnown RBP26.83■■□□□ 1.89
SHANK1-202ENST00000359082 TRIM26Q12899 539 aaPredicted RBP26.73■■□□□ 1.87
SHANK1-202ENST00000359082 CHIC1Q5VXU3 224 aa26.71■■□□□ 1.87
SHANK1-202ENST00000359082 SLC4A1APQ9BWU0 796 aaKnown RBP26.62■■□□□ 1.85
SHANK1-202ENST00000359082 HRCP23327 699 aa26.57■■□□□ 1.84
SHANK1-202ENST00000359082 ZNF316A6NFI3 1004 aaPredicted RBP26.44■■□□□ 1.82
SHANK1-202ENST00000359082 CLSPNQ9HAW4 1339 aa26.39■■□□□ 1.81
SHANK1-202ENST00000359082 LOC105371045A0A1W2PR82 267 aa26.35■■□□□ 1.81
SHANK1-202ENST00000359082 RTL5Q5HYW3 569 aaPredicted RBP26.31■■□□□ 1.8
SHANK1-202ENST00000359082 FAM50AQ14320 339 aaKnown RBP26.1■■□□□ 1.77
SHANK1-202ENST00000359082 DIEXFQ68CQ4 756 aaKnown RBP26.08■■□□□ 1.77
SHANK1-202ENST00000359082 TRIM52Q96A61 297 aa26.04■■□□□ 1.76
SHANK1-202ENST00000359082 BCANQ96GW7 911 aa26.01■■□□□ 1.75
SHANK1-202ENST00000359082 NEUROD1Q13562 356 aa25.98■■□□□ 1.75
SHANK1-202ENST00000359082 ZNF326Q5BKZ1 582 aaKnown RBP25.85■■□□□ 1.73
SHANK1-202ENST00000359082 BCL11AQ9H165 835 aa25.85■■□□□ 1.73
SHANK1-202ENST00000359082 ZBTB47Q9UFB7 747 aaPredicted RBP25.82■■□□□ 1.72
SHANK1-202ENST00000359082 SLC24A1O60721 1099 aa25.8■■□□□ 1.72
SHANK1-202ENST00000359082 ANP32CO43423 234 aa25.71■■□□□ 1.71
SHANK1-202ENST00000359082 CDK11AQ9UQ88 783 aaPredicted RBP25.71■■□□□ 1.71
SHANK1-202ENST00000359082 CANXP27824 592 aaKnown RBP25.69■■□□□ 1.7
SHANK1-202ENST00000359082 GTF3C3Q9Y5Q9 886 aa25.67■■□□□ 1.7
SHANK1-202ENST00000359082 ABCC9O60706 1549 aa25.62■■□□□ 1.69
SHANK1-202ENST00000359082 FBLN2P98095 1184 aa25.49■■□□□ 1.67
SHANK1-202ENST00000359082 PABPN1Q86U42 306 aaKnown RBP eCLIP25.45■■□□□ 1.67
SHANK1-202ENST00000359082 NEFMP07197 916 aa25.43■■□□□ 1.66
SHANK1-202ENST00000359082 NPM2Q86SE8 214 aaKnown RBP25.39■■□□□ 1.66
SHANK1-202ENST00000359082 ARID3CA6NKF2 412 aa25.38■■□□□ 1.65
SHANK1-202ENST00000359082 ANP32AP39687 249 aaKnown RBP25.32■■□□□ 1.64
SHANK1-202ENST00000359082 P3H3Q8IVL6 736 aa25.27■■□□□ 1.64
SHANK1-202ENST00000359082 ZNF777Q9ULD5 760 aaPredicted RBP25.21■■□□□ 1.63
SHANK1-202ENST00000359082 HSP90AA1P07900 732 aaKnown RBP25.09■■□□□ 1.61
SHANK1-202ENST00000359082 ANP32BQ92688 251 aaKnown RBP25.08■■□□□ 1.61
SHANK1-202ENST00000359082 EIF5BO60841 1220 aaKnown RBP25.07■■□□□ 1.6
SHANK1-202ENST00000359082 ACIN1Q9UKV3 1341 aaKnown RBP25.07■■□□□ 1.6
SHANK1-202ENST00000359082 PLPPR3Q6T4P5 718 aa25.05■■□□□ 1.6
SHANK1-202ENST00000359082 FKBP8Q14318 412 aa25.02■■□□□ 1.6
SHANK1-202ENST00000359082 CHGAP10645 457 aaKnown RBP25■■□□□ 1.59
SHANK1-202ENST00000359082 ESF1Q9H501 851 aaKnown RBP24.96■■□□□ 1.59
SHANK1-202ENST00000359082 STAG3Q9UJ98 1225 aa24.95■■□□□ 1.58
SHANK1-202ENST00000359082 SALL2Q9Y467 1007 aaPredicted RBP24.93■■□□□ 1.58
SHANK1-202ENST00000359082 UPF2Q9HAU5 1272 aaKnown RBP24.92■■□□□ 1.58
SHANK1-202ENST00000359082 FAM9BQ8IZU0 186 aa24.91■■□□□ 1.58
SHANK1-202ENST00000359082 HNRNPUQ00839 825 aaKnown RBP eCLIP24.87■■□□□ 1.57
SHANK1-202ENST00000359082 ARXQ96QS3 562 aa24.84■■□□□ 1.57
SHANK1-202ENST00000359082 TONSLQ96HA7 1378 aa24.84■■□□□ 1.57
SHANK1-202ENST00000359082 NBR1Q14596 966 aa24.8■■□□□ 1.56
SHANK1-202ENST00000359082 CSRNP3Q8WYN3 585 aa24.75■■□□□ 1.55
SHANK1-202ENST00000359082 DDX10Q13206 875 aaKnown RBP24.75■■□□□ 1.55
SHANK1-202ENST00000359082 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.69■■□□□ 1.54
SHANK1-202ENST00000359082 GLIPR1L2Q4G1C9 344 aa24.68■■□□□ 1.54
SHANK1-202ENST00000359082 CCDC136Q96JN2 1154 aa24.67■■□□□ 1.54
SHANK1-202ENST00000359082 SCAF1Q9H7N4 1312 aaKnown RBP24.66■■□□□ 1.54
SHANK1-202ENST00000359082 WDR43Q15061 677 aaKnown RBP eCLIP24.64■■□□□ 1.54
SHANK1-202ENST00000359082 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.64■■□□□ 1.53
SHANK1-202ENST00000359082 TMC1Q8TDI8 760 aa24.64■■□□□ 1.53
SHANK1-202ENST00000359082 CHIC2Q9UKJ5 165 aa24.63■■□□□ 1.53
SHANK1-202ENST00000359082 SCRIBQ14160 1630 aa24.59■■□□□ 1.53
SHANK1-202ENST00000359082 A0A0G2JS52 829 aa24.57■■□□□ 1.52
SHANK1-202ENST00000359082 KDM2AQ9Y2K7 1162 aa24.56■■□□□ 1.52
SHANK1-202ENST00000359082 IRX6P78412 446 aaPredicted RBP24.56■■□□□ 1.52
SHANK1-202ENST00000359082 ZBTB7CA1YPR0 619 aa24.54■■□□□ 1.52
SHANK1-202ENST00000359082 NPM1P06748 294 aaKnown RBP eCLIP24.53■■□□□ 1.52
SHANK1-202ENST00000359082 SENP3Q9H4L4 574 aaPredicted RBP24.52■■□□□ 1.52
SHANK1-202ENST00000359082 PLEKHG5O94827 1062 aa24.51■■□□□ 1.51
SHANK1-202ENST00000359082 MYH16Q9H6N6 1097 aa24.48■■□□□ 1.51
SHANK1-202ENST00000359082 MRS2Q9HD23 443 aa24.48■■□□□ 1.51
SHANK1-202ENST00000359082 CDK11BP21127 795 aaKnown RBP24.48■■□□□ 1.51
SHANK1-202ENST00000359082 HIRIP3Q9BW71 556 aaPredicted RBP24.41■■□□□ 1.5
SHANK1-202ENST00000359082 C14orf37Q86TY3 774 aa24.37■■□□□ 1.49
SHANK1-202ENST00000359082 CCDC180Q9P1Z9 1646 aa24.36■■□□□ 1.49
SHANK1-202ENST00000359082 ZCCHC6Q5VYS8 1495 aaKnown RBP24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 292.7 ms