RNA–Protein interactions for RNA: ENST00000356020.2

LINC01565-201, Transcript of long intergenic non-protein coding RNA 1565, humanhuman

TSL 2 BASIC

Gene LINC01565, Length 2,697 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01565-201ENST00000356020 NISCHQ9Y2I1 1504 aa32.23■■■□□ 2.75
LINC01565-201ENST00000356020 CCDC180Q9P1Z9 1646 aa27.49■■□□□ 1.99
LINC01565-201ENST00000356020 SHROOM4Q9ULL8 1493 aa27.34■■□□□ 1.97
LINC01565-201ENST00000356020 ZCCHC6Q5VYS8 1495 aaKnown RBP27.32■■□□□ 1.96
LINC01565-201ENST00000356020 SUPT5HO00267 1087 aaKnown RBP26.85■■□□□ 1.89
LINC01565-201ENST00000356020 DCAF1Q9Y4B6 1507 aa26.54■■□□□ 1.84
LINC01565-201ENST00000356020 DCAF8L2P0C7V8 631 aa26.41■■□□□ 1.82
LINC01565-201ENST00000356020 CHIC1Q5VXU3 224 aa26.25■■□□□ 1.79
LINC01565-201ENST00000356020 MYO15BQ96JP2 1530 aa26.22■■□□□ 1.79
LINC01565-201ENST00000356020 ABCC9O60706 1549 aa25.84■■□□□ 1.73
LINC01565-201ENST00000356020 HRCP23327 699 aa25.65■■□□□ 1.7
LINC01565-201ENST00000356020 SCRIBQ14160 1630 aa25.62■■□□□ 1.69
LINC01565-201ENST00000356020 RSF1Q96T23 1441 aaPredicted RBP25.5■■□□□ 1.67
LINC01565-201ENST00000356020 PCGF6Q9BYE7 350 aa25.47■■□□□ 1.67
LINC01565-201ENST00000356020 LOC105371045A0A1W2PR82 267 aa25.38■■□□□ 1.65
LINC01565-201ENST00000356020 NACADO15069 1562 aa25.32■■□□□ 1.64
LINC01565-201ENST00000356020 RB1CC1Q8TDY2 1594 aa25.32■■□□□ 1.64
LINC01565-201ENST00000356020 TRIM41Q8WV44 630 aa25.07■■□□□ 1.6
LINC01565-201ENST00000356020 TRIM26Q12899 539 aaPredicted RBP25.06■■□□□ 1.6
LINC01565-201ENST00000356020 CECR2Q9BXF3 1484 aa25.05■■□□□ 1.6
LINC01565-201ENST00000356020 MROH2BQ7Z745 1585 aa25.02■■□□□ 1.6
LINC01565-201ENST00000356020 PPARGC1BQ86YN6 1023 aaKnown RBP24.98■■□□□ 1.59
LINC01565-201ENST00000356020 WIZO95785 1651 aa24.91■■□□□ 1.58
LINC01565-201ENST00000356020 BAZ1AQ9NRL2 1556 aaPredicted RBP24.86■■□□□ 1.57
LINC01565-201ENST00000356020 FAM9AQ8IZU1 332 aaPredicted RBP24.78■■□□□ 1.56
LINC01565-201ENST00000356020 EIF4G1Q04637 1599 aaKnown RBP24.73■■□□□ 1.55
LINC01565-201ENST00000356020 ZEB1P37275 1124 aaPredicted RBP24.62■■□□□ 1.53
LINC01565-201ENST00000356020 TOP2AP11388 1531 aaKnown RBP24.58■■□□□ 1.53
LINC01565-201ENST00000356020 SMARCA4P51532 1647 aa24.56■■□□□ 1.52
LINC01565-201ENST00000356020 UNC13AQ9UPW8 1703 aa24.53■■□□□ 1.52
LINC01565-201ENST00000356020 EHMT2Q96KQ7 1210 aa24.48■■□□□ 1.51
LINC01565-201ENST00000356020 SMARCA2P51531 1590 aa24.43■■□□□ 1.5
LINC01565-201ENST00000356020 PELP1Q8IZL8 1130 aaKnown RBP24.41■■□□□ 1.5
LINC01565-201ENST00000356020 CCDC88BA6NC98 1476 aa24.39■■□□□ 1.5
LINC01565-201ENST00000356020 ABCC8Q09428 1581 aa24.35■■□□□ 1.49
LINC01565-201ENST00000356020 WRNQ14191 1432 aaPredicted RBP eCLIP24.18■■□□□ 1.46
LINC01565-201ENST00000356020 BICRAQ9NZM4 1560 aa24.17■■□□□ 1.46
LINC01565-201ENST00000356020 EEA1Q15075 1411 aa24.15■■□□□ 1.46
LINC01565-201ENST00000356020 PEG3Q9GZU2 1588 aa24.13■■□□□ 1.45
LINC01565-201ENST00000356020 SOGA1O94964 1423 aa24.11■■□□□ 1.45
LINC01565-201ENST00000356020 CEP162Q5TB80 1403 aa24.11■■□□□ 1.45
LINC01565-201ENST00000356020 TNIKQ9UKE5 1360 aa24.08■■□□□ 1.45
LINC01565-201ENST00000356020 RUSC2Q8N2Y8 1516 aa23.98■■□□□ 1.43
LINC01565-201ENST00000356020 CSRNP3Q8WYN3 585 aa23.98■■□□□ 1.43
LINC01565-201ENST00000356020 PABPN1Q86U42 306 aaKnown RBP eCLIP23.96■■□□□ 1.43
LINC01565-201ENST00000356020 GOLGA3Q08378 1498 aa23.95■■□□□ 1.43
LINC01565-201ENST00000356020 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.95■■□□□ 1.42
LINC01565-201ENST00000356020 CCER1Q8TC90 406 aaPredicted RBP23.93■■□□□ 1.42
LINC01565-201ENST00000356020 SCAF1Q9H7N4 1312 aaKnown RBP23.9■■□□□ 1.42
LINC01565-201ENST00000356020 SYNJ1O43426 1573 aa23.87■■□□□ 1.41
LINC01565-201ENST00000356020 KIF21BO75037 1637 aa23.84■■□□□ 1.41
LINC01565-201ENST00000356020 ATAD2BQ9ULI0 1458 aa23.84■■□□□ 1.41
LINC01565-201ENST00000356020 UBTFP17480 764 aaKnown RBP23.84■■□□□ 1.41
LINC01565-201ENST00000356020 CEP164Q9UPV0 1460 aa23.81■■□□□ 1.4
LINC01565-201ENST00000356020 BAZ1BQ9UIG0 1483 aaKnown RBP23.79■■□□□ 1.4
LINC01565-201ENST00000356020 TTBK1Q5TCY1 1321 aaPredicted RBP23.76■■□□□ 1.39
LINC01565-201ENST00000356020 CLIP1P30622 1438 aa23.63■■□□□ 1.37
LINC01565-201ENST00000356020 TOP2BQ02880 1626 aa23.61■■□□□ 1.37
LINC01565-201ENST00000356020 VPS8Q8N3P4 1428 aa23.58■■□□□ 1.37
LINC01565-201ENST00000356020 ACIN1Q9UKV3 1341 aaKnown RBP23.57■■□□□ 1.36
LINC01565-201ENST00000356020 BIVM-ERCC5R4GMW8 1640 aa23.56■■□□□ 1.36
LINC01565-201ENST00000356020 RAPGEF2Q9Y4G8 1499 aa23.55■■□□□ 1.36
LINC01565-201ENST00000356020 DIEXFQ68CQ4 756 aaKnown RBP23.53■■□□□ 1.36
LINC01565-201ENST00000356020 HMGXB3Q12766 1538 aa23.46■■□□□ 1.35
LINC01565-201ENST00000356020 MYT1Q01538 1121 aa23.45■■□□□ 1.34
LINC01565-201ENST00000356020 ERICH3Q5RHP9 1530 aa23.44■■□□□ 1.34
LINC01565-201ENST00000356020 CENPBP07199 599 aaPredicted RBP23.42■■□□□ 1.34
LINC01565-201ENST00000356020 NEUROD1Q13562 356 aa23.39■■□□□ 1.33
LINC01565-201ENST00000356020 NCAPD3P42695 1498 aa23.38■■□□□ 1.33
LINC01565-201ENST00000356020 APLP2Q06481 763 aa23.37■■□□□ 1.33
LINC01565-201ENST00000356020 PRXQ9BXM0 1461 aa23.37■■□□□ 1.33
LINC01565-201ENST00000356020 ZNF316A6NFI3 1004 aaPredicted RBP23.36■■□□□ 1.33
LINC01565-201ENST00000356020 HNRNPUL2Q1KMD3 747 aaKnown RBP23.35■■□□□ 1.33
LINC01565-201ENST00000356020 CUX1P39880 1505 aa23.31■■□□□ 1.32
LINC01565-201ENST00000356020 ARAP1Q96P48 1450 aa23.27■■□□□ 1.32
LINC01565-201ENST00000356020 GTF3C3Q9Y5Q9 886 aa23.24■■□□□ 1.31
LINC01565-201ENST00000356020 RANGAP1P46060 587 aaPredicted RBP23.22■■□□□ 1.31
LINC01565-201ENST00000356020 CFTRP13569 1480 aa23.22■■□□□ 1.31
LINC01565-201ENST00000356020 KIF27Q86VH2 1401 aa23.22■■□□□ 1.31
LINC01565-201ENST00000356020 PRDM2Q13029 1718 aa23.19■■□□□ 1.3
LINC01565-201ENST00000356020 CLSPNQ9HAW4 1339 aa23.1■■□□□ 1.29
LINC01565-201ENST00000356020 RRBP1Q9P2E9 1410 aaKnown RBP23.06■■□□□ 1.28
LINC01565-201ENST00000356020 ARHGAP35Q9NRY4 1499 aa23.04■■□□□ 1.28
LINC01565-201ENST00000356020 DHX57Q6P158 1386 aaKnown RBP23.04■■□□□ 1.28
LINC01565-201ENST00000356020 KANK4Q5T7N3 995 aaPredicted RBP23.04■■□□□ 1.28
LINC01565-201ENST00000356020 MIER1Q8N108 512 aa22.98■■□□□ 1.27
LINC01565-201ENST00000356020 CUX2O14529 1486 aa22.98■■□□□ 1.27
LINC01565-201ENST00000356020 CCNB3Q8WWL7 1395 aa22.91■■□□□ 1.26
LINC01565-201ENST00000356020 IGF1RP08069 1367 aa22.9■■□□□ 1.26
LINC01565-201ENST00000356020 YTHDC1Q96MU7 727 aaKnown RBP22.9■■□□□ 1.26
LINC01565-201ENST00000356020 CADPSQ9ULU8 1353 aa22.9■■□□□ 1.26
LINC01565-201ENST00000356020 MAP3K1Q13233 1512 aa22.89■■□□□ 1.25
LINC01565-201ENST00000356020 FGD5Q6ZNL6 1462 aa22.87■■□□□ 1.25
LINC01565-201ENST00000356020 TIAM1Q13009 1591 aa22.87■■□□□ 1.25
LINC01565-201ENST00000356020 CARMIL1Q5VZK9 1371 aa22.82■■□□□ 1.24
LINC01565-201ENST00000356020 CFAP43Q8NDM7 1665 aa22.75■■□□□ 1.23
LINC01565-201ENST00000356020 LRRC9Q6ZRR7 1453 aa22.73■■□□□ 1.23
LINC01565-201ENST00000356020 FHAD1B1AJZ9 1412 aa22.72■■□□□ 1.23
LINC01565-201ENST00000356020 CC2D2AQ9P2K1 1620 aa22.71■■□□□ 1.23
LINC01565-201ENST00000356020 RAB3GAP2Q9H2M9 1393 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms