RNA–Protein interactions for RNA: ENST00000353739.8

RNF38-203, Transcript of ring finger protein 38, humanhuman

TSL 1 (best) BASIC

Gene RNF38, Length 4,945 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38-203ENST00000353739 NISCHQ9Y2I1 1504 aa7.96□□□□□ -1.14
RNF38-203ENST00000353739 CCDC180Q9P1Z9 1646 aa6.98□□□□□ -1.29
RNF38-203ENST00000353739 ZCCHC6Q5VYS8 1495 aaKnown RBP6.74□□□□□ -1.33
RNF38-203ENST00000353739 DCAF1Q9Y4B6 1507 aa6.67□□□□□ -1.34
RNF38-203ENST00000353739 MYO15BQ96JP2 1530 aa6.54□□□□□ -1.36
RNF38-203ENST00000353739 SHROOM4Q9ULL8 1493 aa6.47□□□□□ -1.37
RNF38-203ENST00000353739 NACADO15069 1562 aa6.42□□□□□ -1.38
RNF38-203ENST00000353739 DCAF8L2P0C7V8 631 aa6.37□□□□□ -1.39
RNF38-203ENST00000353739 ABCC9O60706 1549 aa6.37□□□□□ -1.39
RNF38-203ENST00000353739 SUPT5HO00267 1087 aaKnown RBP6.32□□□□□ -1.4
RNF38-203ENST00000353739 RB1CC1Q8TDY2 1594 aa6.32□□□□□ -1.4
RNF38-203ENST00000353739 SCRIBQ14160 1630 aa6.31□□□□□ -1.4
RNF38-203ENST00000353739 RSF1Q96T23 1441 aaPredicted RBP6.19□□□□□ -1.42
RNF38-203ENST00000353739 BAZ1AQ9NRL2 1556 aaPredicted RBP6.18□□□□□ -1.42
RNF38-203ENST00000353739 CHIC1Q5VXU3 224 aa6.17□□□□□ -1.42
RNF38-203ENST00000353739 UNC13AQ9UPW8 1703 aa6.12□□□□□ -1.43
RNF38-203ENST00000353739 SMARCA4P51532 1647 aa6.1□□□□□ -1.43
RNF38-203ENST00000353739 TOP2AP11388 1531 aaKnown RBP6.1□□□□□ -1.43
RNF38-203ENST00000353739 MROH2BQ7Z745 1585 aa6.1□□□□□ -1.43
RNF38-203ENST00000353739 WIZO95785 1651 aa6.07□□□□□ -1.44
RNF38-203ENST00000353739 CECR2Q9BXF3 1484 aa6.07□□□□□ -1.44
RNF38-203ENST00000353739 PEG3Q9GZU2 1588 aa6.05□□□□□ -1.44
RNF38-203ENST00000353739 EIF4G1Q04637 1599 aaKnown RBP6.04□□□□□ -1.44
RNF38-203ENST00000353739 BICRAQ9NZM4 1560 aa6.02□□□□□ -1.45
RNF38-203ENST00000353739 TRIM41Q8WV44 630 aa6.01□□□□□ -1.45
RNF38-203ENST00000353739 SMARCA2P51531 1590 aa6.01□□□□□ -1.45
RNF38-203ENST00000353739 EEA1Q15075 1411 aa5.97□□□□□ -1.45
RNF38-203ENST00000353739 CCDC88BA6NC98 1476 aa5.96□□□□□ -1.45
RNF38-203ENST00000353739 BAZ1BQ9UIG0 1483 aaKnown RBP5.93□□□□□ -1.46
RNF38-203ENST00000353739 HMGXB3Q12766 1538 aa5.93□□□□□ -1.46
RNF38-203ENST00000353739 ATAD2BQ9ULI0 1458 aa5.92□□□□□ -1.46
RNF38-203ENST00000353739 TRIM26Q12899 539 aaPredicted RBP5.9□□□□□ -1.46
RNF38-203ENST00000353739 HRCP23327 699 aa5.88□□□□□ -1.47
RNF38-203ENST00000353739 ZEB1P37275 1124 aaPredicted RBP5.87□□□□□ -1.47
RNF38-203ENST00000353739 PRDM2Q13029 1718 aa5.87□□□□□ -1.47
RNF38-203ENST00000353739 NCAPD3P42695 1498 aa5.87□□□□□ -1.47
RNF38-203ENST00000353739 LOC105371045A0A1W2PR82 267 aa5.86□□□□□ -1.47
RNF38-203ENST00000353739 PABPN1Q86U42 306 aaKnown RBP eCLIP5.86□□□□□ -1.47
RNF38-203ENST00000353739 WRNQ14191 1432 aaPredicted RBP eCLIP5.86□□□□□ -1.47
RNF38-203ENST00000353739 KIF21BO75037 1637 aa5.86□□□□□ -1.47
RNF38-203ENST00000353739 ABCC8Q09428 1581 aa5.86□□□□□ -1.47
RNF38-203ENST00000353739 BIVM-ERCC5R4GMW8 1640 aa5.85□□□□□ -1.47
RNF38-203ENST00000353739 GOLGA3Q08378 1498 aa5.85□□□□□ -1.47
RNF38-203ENST00000353739 PCGF6Q9BYE7 350 aa5.84□□□□□ -1.47
RNF38-203ENST00000353739 TNIKQ9UKE5 1360 aa5.84□□□□□ -1.47
RNF38-203ENST00000353739 CEP164Q9UPV0 1460 aa5.83□□□□□ -1.48
RNF38-203ENST00000353739 TOP2BQ02880 1626 aa5.83□□□□□ -1.48
RNF38-203ENST00000353739 SYNJ1O43426 1573 aa5.81□□□□□ -1.48
RNF38-203ENST00000353739 FAM9AQ8IZU1 332 aaPredicted RBP5.8□□□□□ -1.48
RNF38-203ENST00000353739 ERICH3Q5RHP9 1530 aa5.79□□□□□ -1.48
RNF38-203ENST00000353739 CSRNP3Q8WYN3 585 aa5.79□□□□□ -1.48
RNF38-203ENST00000353739 CEP162Q5TB80 1403 aa5.79□□□□□ -1.48
RNF38-203ENST00000353739 CFTRP13569 1480 aa5.77□□□□□ -1.49
RNF38-203ENST00000353739 SOGA1O94964 1423 aa5.77□□□□□ -1.49
RNF38-203ENST00000353739 KIF27Q86VH2 1401 aa5.73□□□□□ -1.49
RNF38-203ENST00000353739 CC2D2AQ9P2K1 1620 aa5.72□□□□□ -1.49
RNF38-203ENST00000353739 UBTFP17480 764 aaKnown RBP5.72□□□□□ -1.49
RNF38-203ENST00000353739 CUX1P39880 1505 aa5.72□□□□□ -1.49
RNF38-203ENST00000353739 CLIP1P30622 1438 aa5.71□□□□□ -1.5
RNF38-203ENST00000353739 CADPSQ9ULU8 1353 aa5.71□□□□□ -1.5
RNF38-203ENST00000353739 VPS8Q8N3P4 1428 aa5.7□□□□□ -1.5
RNF38-203ENST00000353739 RUSC2Q8N2Y8 1516 aa5.7□□□□□ -1.5
RNF38-203ENST00000353739 PRXQ9BXM0 1461 aa5.7□□□□□ -1.5
RNF38-203ENST00000353739 APLP2Q06481 763 aa5.69□□□□□ -1.5
RNF38-203ENST00000353739 LAMC3Q9Y6N6 1575 aa5.69□□□□□ -1.5
RNF38-203ENST00000353739 DNMBPQ6XZF7 1577 aa5.69□□□□□ -1.5
RNF38-203ENST00000353739 CUL7Q14999 1698 aa5.67□□□□□ -1.5
RNF38-203ENST00000353739 RAPGEF2Q9Y4G8 1499 aa5.67□□□□□ -1.5
RNF38-203ENST00000353739 EHMT2Q96KQ7 1210 aa5.65□□□□□ -1.5
RNF38-203ENST00000353739 FANCD2Q9BXW9 1451 aa5.65□□□□□ -1.5
RNF38-203ENST00000353739 MAP3K1Q13233 1512 aa5.64□□□□□ -1.51
RNF38-203ENST00000353739 FGD5Q6ZNL6 1462 aa5.64□□□□□ -1.51
RNF38-203ENST00000353739 EFCAB5A4FU69 1503 aa5.63□□□□□ -1.51
RNF38-203ENST00000353739 CUX2O14529 1486 aa5.63□□□□□ -1.51
RNF38-203ENST00000353739 ABCA10Q8WWZ4 1543 aa5.63□□□□□ -1.51
RNF38-203ENST00000353739 WDR97A6NE52 1622 aa5.62□□□□□ -1.51
RNF38-203ENST00000353739 ARAP1Q96P48 1450 aa5.62□□□□□ -1.51
RNF38-203ENST00000353739 PDS5BQ9NTI5 1447 aa5.62□□□□□ -1.51
RNF38-203ENST00000353739 CCER1Q8TC90 406 aaPredicted RBP5.62□□□□□ -1.51
RNF38-203ENST00000353739 KIF21AQ7Z4S6 1674 aa5.61□□□□□ -1.51
RNF38-203ENST00000353739 CTTNBP2Q8WZ74 1663 aa5.61□□□□□ -1.51
RNF38-203ENST00000353739 FHAD1B1AJZ9 1412 aa5.61□□□□□ -1.51
RNF38-203ENST00000353739 TOPBP1Q92547 1522 aa5.61□□□□□ -1.51
RNF38-203ENST00000353739 CFAP43Q8NDM7 1665 aa5.59□□□□□ -1.51
RNF38-203ENST00000353739 CARMIL1Q5VZK9 1371 aa5.59□□□□□ -1.51
RNF38-203ENST00000353739 CLSPNQ9HAW4 1339 aa5.59□□□□□ -1.51
RNF38-203ENST00000353739 AQRO60306 1485 aaKnown RBP eCLIP5.59□□□□□ -1.52
RNF38-203ENST00000353739 IGF1RP08069 1367 aa5.58□□□□□ -1.52
RNF38-203ENST00000353739 ABCA5Q8WWZ7 1642 aa5.58□□□□□ -1.52
RNF38-203ENST00000353739 ARHGAP35Q9NRY4 1499 aa5.58□□□□□ -1.52
RNF38-203ENST00000353739 THOC2Q8NI27 1593 aaKnown RBP5.57□□□□□ -1.52
RNF38-203ENST00000353739 POLA1P09884 1462 aaPredicted RBP5.57□□□□□ -1.52
RNF38-203ENST00000353739 PPARGC1BQ86YN6 1023 aaKnown RBP5.57□□□□□ -1.52
RNF38-203ENST00000353739 RRBP1Q9P2E9 1410 aaKnown RBP5.57□□□□□ -1.52
RNF38-203ENST00000353739 TIAM1Q13009 1591 aa5.57□□□□□ -1.52
RNF38-203ENST00000353739 FYCO1Q9BQS8 1478 aa5.57□□□□□ -1.52
RNF38-203ENST00000353739 FMN1Q68DA7 1419 aa5.55□□□□□ -1.52
RNF38-203ENST00000353739 URB2Q14146 1524 aaKnown RBP5.54□□□□□ -1.52
RNF38-203ENST00000353739 MRC2Q9UBG0 1479 aa5.54□□□□□ -1.52
RNF38-203ENST00000353739 PBRM1Q86U86 1689 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms