RNA–Protein interactions for RNA: ENST00000349241.6

PTK7-204, Transcript of protein tyrosine kinase 7 (inactive), humanhuman

TSL 1 (best) BASIC

Gene PTK7, Length 3,801 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTK7-204ENST00000349241 NISCHQ9Y2I1 1504 aa25.63■■□□□ 1.69
PTK7-204ENST00000349241 DCAF8L2P0C7V8 631 aa23.36■■□□□ 1.33
PTK7-204ENST00000349241 SHROOM4Q9ULL8 1493 aa23.24■■□□□ 1.31
PTK7-204ENST00000349241 SUPT5HO00267 1087 aaKnown RBP22.94■■□□□ 1.26
PTK7-204ENST00000349241 EHMT2Q96KQ7 1210 aa21.72■■□□□ 1.07
PTK7-204ENST00000349241 CHIC1Q5VXU3 224 aa21.49■■□□□ 1.03
PTK7-204ENST00000349241 ZCCHC6Q5VYS8 1495 aaKnown RBP21.47■■□□□ 1.03
PTK7-204ENST00000349241 FAM9AQ8IZU1 332 aaPredicted RBP21.44■■□□□ 1.02
PTK7-204ENST00000349241 PCGF6Q9BYE7 350 aa21.38■■□□□ 1.01
PTK7-204ENST00000349241 LOC105371045A0A1W2PR82 267 aa21.31■■□□□ 1
PTK7-204ENST00000349241 CCDC180Q9P1Z9 1646 aa21.21■□□□□ 0.99
PTK7-204ENST00000349241 ABCC9O60706 1549 aa21.14■□□□□ 0.97
PTK7-204ENST00000349241 TRIM41Q8WV44 630 aa21.09■□□□□ 0.97
PTK7-204ENST00000349241 MYO15BQ96JP2 1530 aa20.96■□□□□ 0.95
PTK7-204ENST00000349241 TTBK1Q5TCY1 1321 aaPredicted RBP20.9■□□□□ 0.94
PTK7-204ENST00000349241 PPARGC1BQ86YN6 1023 aaKnown RBP20.89■□□□□ 0.93
PTK7-204ENST00000349241 SCRIBQ14160 1630 aa20.83■□□□□ 0.93
PTK7-204ENST00000349241 HRCP23327 699 aa20.71■□□□□ 0.91
PTK7-204ENST00000349241 PABPN1Q86U42 306 aaKnown RBP eCLIP20.66■□□□□ 0.98e-8■■□□□ 13.3
PTK7-204ENST00000349241 RANGAP1P46060 587 aaPredicted RBP20.56■□□□□ 0.88
PTK7-204ENST00000349241 TRIM26Q12899 539 aaPredicted RBP20.5■□□□□ 0.87
PTK7-204ENST00000349241 RSF1Q96T23 1441 aaPredicted RBP20.49■□□□□ 0.87
PTK7-204ENST00000349241 DCAF1Q9Y4B6 1507 aa20.44■□□□□ 0.86
PTK7-204ENST00000349241 UBTFP17480 764 aaKnown RBP20.38■□□□□ 0.85
PTK7-204ENST00000349241 CECR2Q9BXF3 1484 aa20.36■□□□□ 0.85
PTK7-204ENST00000349241 CCER1Q8TC90 406 aaPredicted RBP20.2■□□□□ 0.82
PTK7-204ENST00000349241 RB1CC1Q8TDY2 1594 aa20.17■□□□□ 0.82
PTK7-204ENST00000349241 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.14■□□□□ 0.82
PTK7-204ENST00000349241 MROH2BQ7Z745 1585 aa20.1■□□□□ 0.81
PTK7-204ENST00000349241 NACADO15069 1562 aa20.05■□□□□ 0.8
PTK7-204ENST00000349241 APLP2Q06481 763 aa20.03■□□□□ 0.8
PTK7-204ENST00000349241 ZEB1P37275 1124 aaPredicted RBP20■□□□□ 0.79
PTK7-204ENST00000349241 HNRNPUL2Q1KMD3 747 aaKnown RBP19.92■□□□□ 0.78
PTK7-204ENST00000349241 WIZO95785 1651 aa19.92■□□□□ 0.78
PTK7-204ENST00000349241 CSRNP3Q8WYN3 585 aa19.85■□□□□ 0.77
PTK7-204ENST00000349241 ATP1B4Q9UN42 357 aaPredicted RBP19.79■□□□□ 0.76
PTK7-204ENST00000349241 ABCC8Q09428 1581 aa19.75■□□□□ 0.75
PTK7-204ENST00000349241 BAZ1AQ9NRL2 1556 aaPredicted RBP19.72■□□□□ 0.75
PTK7-204ENST00000349241 ITGAEP38570 1179 aa19.71■□□□□ 0.75
PTK7-204ENST00000349241 SOGA1O94964 1423 aa19.68■□□□□ 0.74
PTK7-204ENST00000349241 CCDC88BA6NC98 1476 aa19.68■□□□□ 0.74
PTK7-204ENST00000349241 YTHDC1Q96MU7 727 aaKnown RBP19.64■□□□□ 0.73
PTK7-204ENST00000349241 CEP162Q5TB80 1403 aa19.53■□□□□ 0.72
PTK7-204ENST00000349241 RUSC2Q8N2Y8 1516 aa19.51■□□□□ 0.71
PTK7-204ENST00000349241 WRNQ14191 1432 aaPredicted RBP eCLIP19.49■□□□□ 0.71
PTK7-204ENST00000349241 DIEXFQ68CQ4 756 aaKnown RBP19.48■□□□□ 0.71
PTK7-204ENST00000349241 SMARCA4P51532 1647 aa19.44■□□□□ 0.7
PTK7-204ENST00000349241 P3H3Q8IVL6 736 aa19.43■□□□□ 0.7
PTK7-204ENST00000349241 TOP2AP11388 1531 aaKnown RBP19.42■□□□□ 0.7
PTK7-204ENST00000349241 BAZ1BQ9UIG0 1483 aaKnown RBP19.41■□□□□ 0.7
PTK7-204ENST00000349241 TNIKQ9UKE5 1360 aa19.33■□□□□ 0.69
PTK7-204ENST00000349241 SMARCA2P51531 1590 aa19.32■□□□□ 0.68
PTK7-204ENST00000349241 CLIP1P30622 1438 aa19.32■□□□□ 0.68
PTK7-204ENST00000349241 CENPBP07199 599 aaPredicted RBP19.3■□□□□ 0.68
PTK7-204ENST00000349241 GOLGA3Q08378 1498 aa19.28■□□□□ 0.68
PTK7-204ENST00000349241 FAM50AQ14320 339 aaKnown RBP19.23■□□□□ 0.67
PTK7-204ENST00000349241 ATAD2BQ9ULI0 1458 aa19.22■□□□□ 0.67
PTK7-204ENST00000349241 EEA1Q15075 1411 aa19.19■□□□□ 0.66
PTK7-204ENST00000349241 ZNF316A6NFI3 1004 aaPredicted RBP19.18■□□□□ 0.66
PTK7-204ENST00000349241 ARID3CA6NKF2 412 aa19.14■□□□□ 0.65
PTK7-204ENST00000349241 CEP164Q9UPV0 1460 aa19.13■□□□□ 0.65
PTK7-204ENST00000349241 SCAF1Q9H7N4 1312 aaKnown RBP19.12■□□□□ 0.65
PTK7-204ENST00000349241 NEUROD1Q13562 356 aa19.12■□□□□ 0.65
PTK7-204ENST00000349241 GTF3C3Q9Y5Q9 886 aa19.1■□□□□ 0.65
PTK7-204ENST00000349241 RAPGEF2Q9Y4G8 1499 aa19.1■□□□□ 0.65
PTK7-204ENST00000349241 BICRAQ9NZM4 1560 aa19.08■□□□□ 0.65
PTK7-204ENST00000349241 KANK4Q5T7N3 995 aaPredicted RBP19.08■□□□□ 0.64
PTK7-204ENST00000349241 UNC13AQ9UPW8 1703 aa19.06■□□□□ 0.64
PTK7-204ENST00000349241 ACIN1Q9UKV3 1341 aaKnown RBP19.02■□□□□ 0.64
PTK7-204ENST00000349241 MIER1Q8N108 512 aa18.99■□□□□ 0.63
PTK7-204ENST00000349241 SYNJ1O43426 1573 aa18.99■□□□□ 0.63
PTK7-204ENST00000349241 KIF27Q86VH2 1401 aa18.95■□□□□ 0.62
PTK7-204ENST00000349241 VPS8Q8N3P4 1428 aa18.94■□□□□ 0.62
PTK7-204ENST00000349241 CUX2O14529 1486 aa18.9■□□□□ 0.62
PTK7-204ENST00000349241 HIRIP3Q9BW71 556 aaPredicted RBP18.88■□□□□ 0.61
PTK7-204ENST00000349241 CNGB1Q14028 1251 aaPredicted RBP18.86■□□□□ 0.61
PTK7-204ENST00000349241 EIF4G1Q04637 1599 aaKnown RBP18.85■□□□□ 0.61
PTK7-204ENST00000349241 FBLN2P98095 1184 aa18.82■□□□□ 0.6
PTK7-204ENST00000349241 CARMIL1Q5VZK9 1371 aa18.8■□□□□ 0.6
PTK7-204ENST00000349241 TRIM52Q96A61 297 aa18.77■□□□□ 0.6
PTK7-204ENST00000349241 CHIC2Q9UKJ5 165 aa18.77■□□□□ 0.59
PTK7-204ENST00000349241 SIN3AQ96ST3 1273 aa18.75■□□□□ 0.59
PTK7-204ENST00000349241 CADPSQ9ULU8 1353 aa18.73■□□□□ 0.59
PTK7-204ENST00000349241 NCAPD3P42695 1498 aa18.7■□□□□ 0.58
PTK7-204ENST00000349241 DDX10Q13206 875 aaKnown RBP18.7■□□□□ 0.58
PTK7-204ENST00000349241 TDRD9Q8NDG6 1382 aaKnown RBP18.7■□□□□ 0.58
PTK7-204ENST00000349241 DNAJC5BQ9UF47 199 aa18.69■□□□□ 0.58
PTK7-204ENST00000349241 KIF21BO75037 1637 aa18.69■□□□□ 0.58
PTK7-204ENST00000349241 POLR3GLQ9BT43 218 aa18.68■□□□□ 0.58
PTK7-204ENST00000349241 CCNB3Q8WWL7 1395 aa18.68■□□□□ 0.58
PTK7-204ENST00000349241 IGF1RP08069 1367 aa18.65■□□□□ 0.58
PTK7-204ENST00000349241 BCANQ96GW7 911 aa18.64■□□□□ 0.58
PTK7-204ENST00000349241 CUX1P39880 1505 aa18.64■□□□□ 0.57
PTK7-204ENST00000349241 ARAP1Q96P48 1450 aa18.63■□□□□ 0.57
PTK7-204ENST00000349241 RRP7BPQ9NSQ0 103 aa18.62■□□□□ 0.57
PTK7-204ENST00000349241 MTUS2Q5JR59 1369 aa18.61■□□□□ 0.57
PTK7-204ENST00000349241 RAD54L2Q9Y4B4 1467 aa18.6■□□□□ 0.57
PTK7-204ENST00000349241 PEG3Q9GZU2 1588 aa18.59■□□□□ 0.57
PTK7-204ENST00000349241 FHOD3Q2V2M9 1422 aa18.59■□□□□ 0.57
PTK7-204ENST00000349241 TOP2BQ02880 1626 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms