RNA–Protein interactions for RNA: ENST00000348962.6

PTPRO-202, Transcript of protein tyrosine phosphatase, receptor type O, humanhuman

TSL 1 (best) BASIC

Gene PTPRO, Length 5,061 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRO-202ENST00000348962 DCAF8L2P0C7V8 631 aa27.4■■□□□ 1.98
PTPRO-202ENST00000348962 NISCHQ9Y2I1 1504 aa25.77■■□□□ 1.72
PTPRO-202ENST00000348962 SUPT5HO00267 1087 aaKnown RBP25.55■■□□□ 1.68
PTPRO-202ENST00000348962 SHROOM4Q9ULL8 1493 aa25.07■■□□□ 1.6
PTPRO-202ENST00000348962 EHMT2Q96KQ7 1210 aa24.66■■□□□ 1.54
PTPRO-202ENST00000348962 FAM9AQ8IZU1 332 aaPredicted RBP24.58■■□□□ 1.52
PTPRO-202ENST00000348962 APLP2Q06481 763 aa24.56■■□□□ 1.52
PTPRO-202ENST00000348962 PELP1Q8IZL8 1130 aaKnown RBP23.9■■□□□ 1.42
PTPRO-202ENST00000348962 RANGAP1P46060 587 aaPredicted RBP23.8■■□□□ 1.4
PTPRO-202ENST00000348962 TTBK1Q5TCY1 1321 aaPredicted RBP23.77■■□□□ 1.4
PTPRO-202ENST00000348962 TRIM41Q8WV44 630 aa23.76■■□□□ 1.39
PTPRO-202ENST00000348962 ATP1B4Q9UN42 357 aaPredicted RBP23.75■■□□□ 1.39
PTPRO-202ENST00000348962 UBTFP17480 764 aaKnown RBP23.58■■□□□ 1.36
PTPRO-202ENST00000348962 PCGF6Q9BYE7 350 aa23.47■■□□□ 1.35
PTPRO-202ENST00000348962 CCER1Q8TC90 406 aaPredicted RBP23.25■■□□□ 1.31
PTPRO-202ENST00000348962 ZEB1P37275 1124 aaPredicted RBP23.18■■□□□ 1.3
PTPRO-202ENST00000348962 MYT1LQ9UL68 1186 aa23.09■■□□□ 1.29
PTPRO-202ENST00000348962 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.07■■□□□ 1.28
PTPRO-202ENST00000348962 HNRNPUL2Q1KMD3 747 aaKnown RBP23.07■■□□□ 1.28
PTPRO-202ENST00000348962 CENPBP07199 599 aaPredicted RBP22.98■■□□□ 1.27
PTPRO-202ENST00000348962 ERICH6Q7L0X2 663 aa22.77■■□□□ 1.24
PTPRO-202ENST00000348962 PPARGC1BQ86YN6 1023 aaKnown RBP22.75■■□□□ 1.23
PTPRO-202ENST00000348962 NEFLP07196 543 aa22.73■■□□□ 1.23
PTPRO-202ENST00000348962 ITGAEP38570 1179 aa22.71■■□□□ 1.23
PTPRO-202ENST00000348962 ABCC9O60706 1549 aa22.67■■□□□ 1.22
PTPRO-202ENST00000348962 PABPN1Q86U42 306 aaKnown RBP eCLIP22.64■■□□□ 1.22
PTPRO-202ENST00000348962 POLR3GLQ9BT43 218 aa22.54■■□□□ 1.2
PTPRO-202ENST00000348962 TRIM26Q12899 539 aaPredicted RBP22.52■■□□□ 1.2
PTPRO-202ENST00000348962 CHIC1Q5VXU3 224 aa22.48■■□□□ 1.19
PTPRO-202ENST00000348962 YTHDC1Q96MU7 727 aaKnown RBP22.45■■□□□ 1.18
PTPRO-202ENST00000348962 LOC105371045A0A1W2PR82 267 aa22.34■■□□□ 1.17
PTPRO-202ENST00000348962 SLC4A1APQ9BWU0 796 aaKnown RBP22.3■■□□□ 1.16
PTPRO-202ENST00000348962 FBLN2P98095 1184 aa22.28■■□□□ 1.16
PTPRO-202ENST00000348962 FAM50AQ14320 339 aaKnown RBP22.21■■□□□ 1.15
PTPRO-202ENST00000348962 CNGB1Q14028 1251 aaPredicted RBP22.19■■□□□ 1.14
PTPRO-202ENST00000348962 TRIM52Q96A61 297 aa22.14■■□□□ 1.13
PTPRO-202ENST00000348962 DAXXQ9UER7 740 aaPredicted RBP22.1■■□□□ 1.13
PTPRO-202ENST00000348962 HRCP23327 699 aa22.01■■□□□ 1.11
PTPRO-202ENST00000348962 NEUROD1Q13562 356 aa21.83■■□□□ 1.09
PTPRO-202ENST00000348962 ZNF326Q5BKZ1 582 aaKnown RBP21.82■■□□□ 1.08
PTPRO-202ENST00000348962 BCANQ96GW7 911 aa21.8■■□□□ 1.08
PTPRO-202ENST00000348962 CDK11AQ9UQ88 783 aaPredicted RBP21.8■■□□□ 1.08
PTPRO-202ENST00000348962 CLSPNQ9HAW4 1339 aa21.76■■□□□ 1.07
PTPRO-202ENST00000348962 P3H3Q8IVL6 736 aa21.76■■□□□ 1.07
PTPRO-202ENST00000348962 ARID3CA6NKF2 412 aa21.75■■□□□ 1.07
PTPRO-202ENST00000348962 ESF1Q9H501 851 aaKnown RBP21.75■■□□□ 1.07
PTPRO-202ENST00000348962 CSRNP3Q8WYN3 585 aa21.73■■□□□ 1.07
PTPRO-202ENST00000348962 NPM1P06748 294 aaKnown RBP eCLIP21.72■■□□□ 1.07
PTPRO-202ENST00000348962 ZNF777Q9ULD5 760 aaPredicted RBP21.68■■□□□ 1.06
PTPRO-202ENST00000348962 NEFMP07197 916 aa21.61■■□□□ 1.05
PTPRO-202ENST00000348962 DIEXFQ68CQ4 756 aaKnown RBP21.61■■□□□ 1.05
PTPRO-202ENST00000348962 ZBTB47Q9UFB7 747 aaPredicted RBP21.58■■□□□ 1.05
PTPRO-202ENST00000348962 SCRIBQ14160 1630 aa21.58■■□□□ 1.04
PTPRO-202ENST00000348962 SLC24A1O60721 1099 aa21.55■■□□□ 1.04
PTPRO-202ENST00000348962 ANP32CO43423 234 aa21.55■■□□□ 1.04
PTPRO-202ENST00000348962 ZNF316A6NFI3 1004 aaPredicted RBP21.52■■□□□ 1.03
PTPRO-202ENST00000348962 STAG3Q9UJ98 1225 aa21.51■■□□□ 1.03
PTPRO-202ENST00000348962 CHGAP10645 457 aaKnown RBP21.42■■□□□ 1.02
PTPRO-202ENST00000348962 MYT1Q01538 1121 aa21.38■■□□□ 1.01
PTPRO-202ENST00000348962 PLPPR3Q6T4P5 718 aa21.37■■□□□ 1.01
PTPRO-202ENST00000348962 CANXP27824 592 aaKnown RBP21.36■■□□□ 1.01
PTPRO-202ENST00000348962 CHMP7Q8WUX9 453 aaPredicted RBP21.34■■□□□ 1.01
PTPRO-202ENST00000348962 RTL5Q5HYW3 569 aaPredicted RBP21.31■■□□□ 1
PTPRO-202ENST00000348962 TSPY4P0CV99 314 aa21.25■□□□□ 0.99
PTPRO-202ENST00000348962 TSPY10P0CW01 314 aa21.25■□□□□ 0.99
PTPRO-202ENST00000348962 BCL11AQ9H165 835 aa21.21■□□□□ 0.99
PTPRO-202ENST00000348962 ZCCHC6Q5VYS8 1495 aaKnown RBP21.2■□□□□ 0.98
PTPRO-202ENST00000348962 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.17■□□□□ 0.98
PTPRO-202ENST00000348962 TONSLQ96HA7 1378 aa21.17■□□□□ 0.98
PTPRO-202ENST00000348962 CHIC2Q9UKJ5 165 aa21.11■□□□□ 0.97
PTPRO-202ENST00000348962 MTUS2Q5JR59 1369 aa21.08■□□□□ 0.97
PTPRO-202ENST00000348962 RB1CC1Q8TDY2 1594 aa21.07■□□□□ 0.96
PTPRO-202ENST00000348962 PLEKHD1A6NEE1 506 aa21■□□□□ 0.95
PTPRO-202ENST00000348962 KCNH8Q96L42 1107 aa21■□□□□ 0.95
PTPRO-202ENST00000348962 CCDC180Q9P1Z9 1646 aa20.97■□□□□ 0.95
PTPRO-202ENST00000348962 SCAF1Q9H7N4 1312 aaKnown RBP20.93■□□□□ 0.94
PTPRO-202ENST00000348962 PPP1R15AO75807 674 aaPredicted RBP20.93■□□□□ 0.94
PTPRO-202ENST00000348962 KDM2AQ9Y2K7 1162 aa20.91■□□□□ 0.94
PTPRO-202ENST00000348962 ARID4BQ4LE39 1312 aaPredicted RBP20.86■□□□□ 0.93
PTPRO-202ENST00000348962 C14orf37Q86TY3 774 aa20.84■□□□□ 0.93
PTPRO-202ENST00000348962 NPM2Q86SE8 214 aaKnown RBP20.84■□□□□ 0.93
PTPRO-202ENST00000348962 GTF3C3Q9Y5Q9 886 aa20.84■□□□□ 0.93
PTPRO-202ENST00000348962 RSF1Q96T23 1441 aaPredicted RBP20.84■□□□□ 0.93
PTPRO-202ENST00000348962 TMC1Q8TDI8 760 aa20.83■□□□□ 0.93
PTPRO-202ENST00000348962 CLIP1P30622 1438 aa20.82■□□□□ 0.92
PTPRO-202ENST00000348962 ACIN1Q9UKV3 1341 aaKnown RBP20.81■□□□□ 0.92
PTPRO-202ENST00000348962 WDR43Q15061 677 aaKnown RBP eCLIP20.8■□□□□ 0.92
PTPRO-202ENST00000348962 BAZ1BQ9UIG0 1483 aaKnown RBP20.8■□□□□ 0.92
PTPRO-202ENST00000348962 DDX10Q13206 875 aaKnown RBP20.8■□□□□ 0.92
PTPRO-202ENST00000348962 ERCC6Q03468 1493 aa20.8■□□□□ 0.92
PTPRO-202ENST00000348962 A0A0G2JS52 829 aa20.79■□□□□ 0.92
PTPRO-202ENST00000348962 FAM9BQ8IZU0 186 aa20.79■□□□□ 0.92
PTPRO-202ENST00000348962 NACADO15069 1562 aa20.78■□□□□ 0.92
PTPRO-202ENST00000348962 HNRNPUQ00839 825 aaKnown RBP eCLIP20.77■□□□□ 0.92
PTPRO-202ENST00000348962 RRP7BPQ9NSQ0 103 aa20.76■□□□□ 0.91
PTPRO-202ENST00000348962 EEA1Q15075 1411 aa20.75■□□□□ 0.91
PTPRO-202ENST00000348962 ANP32AP39687 249 aaKnown RBP20.75■□□□□ 0.91
PTPRO-202ENST00000348962 CFDP1Q9UEE9 299 aaPredicted RBP20.75■□□□□ 0.91
PTPRO-202ENST00000348962 SALL2Q9Y467 1007 aaPredicted RBP20.74■□□□□ 0.91
PTPRO-202ENST00000348962 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms