RNA–Protein interactions for RNA: ENST00000345016.9

AP3D1-201, Transcript of adaptor related protein complex 3 subunit delta 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene AP3D1, Length 4,870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP3D1-201ENST00000345016 DCAF8L2P0C7V8 631 aa28.23■■■□□ 2.11
AP3D1-201ENST00000345016 SUPT5HO00267 1087 aaKnown RBP27.46■■□□□ 1.99
AP3D1-201ENST00000345016 SHROOM4Q9ULL8 1493 aa26.72■■□□□ 1.87
AP3D1-201ENST00000345016 NISCHQ9Y2I1 1504 aa26.67■■□□□ 1.86
AP3D1-201ENST00000345016 EHMT2Q96KQ7 1210 aa26.6■■□□□ 1.85
AP3D1-201ENST00000345016 PELP1Q8IZL8 1130 aaKnown RBP26.52■■□□□ 1.84
AP3D1-201ENST00000345016 PCGF6Q9BYE7 350 aa26.28■■□□□ 1.8
AP3D1-201ENST00000345016 FAM9AQ8IZU1 332 aaPredicted RBP25.92■■□□□ 1.74
AP3D1-201ENST00000345016 APLP2Q06481 763 aa25.87■■□□□ 1.73
AP3D1-201ENST00000345016 CENPBP07199 599 aaPredicted RBP25.82■■□□□ 1.72
AP3D1-201ENST00000345016 TTBK1Q5TCY1 1321 aaPredicted RBP25.79■■□□□ 1.72
AP3D1-201ENST00000345016 ZEB1P37275 1124 aaPredicted RBP25.67■■□□□ 1.7
AP3D1-201ENST00000345016 CCER1Q8TC90 406 aaPredicted RBP25.54■■□□□ 1.68
AP3D1-201ENST00000345016 ERICH6Q7L0X2 663 aa25.49■■□□□ 1.67
AP3D1-201ENST00000345016 MYT1Q01538 1121 aa25.36■■□□□ 1.65
AP3D1-201ENST00000345016 TRIM41Q8WV44 630 aa25.29■■□□□ 1.64
AP3D1-201ENST00000345016 YTHDC1Q96MU7 727 aaKnown RBP25.26■■□□□ 1.63
AP3D1-201ENST00000345016 RANGAP1P46060 587 aaPredicted RBP25.2■■□□□ 1.62
AP3D1-201ENST00000345016 HRCP23327 699 aa25.13■■□□□ 1.61
AP3D1-201ENST00000345016 NEFLP07196 543 aa25.05■■□□□ 1.6
AP3D1-201ENST00000345016 PPARGC1BQ86YN6 1023 aaKnown RBP24.97■■□□□ 1.59
AP3D1-201ENST00000345016 TRIM26Q12899 539 aaPredicted RBP24.95■■□□□ 1.59
AP3D1-201ENST00000345016 UBTFP17480 764 aaKnown RBP24.95■■□□□ 1.58
AP3D1-201ENST00000345016 ATP1B4Q9UN42 357 aaPredicted RBP24.82■■□□□ 1.56
AP3D1-201ENST00000345016 LOC105371045A0A1W2PR82 267 aa24.63■■□□□ 1.53
AP3D1-201ENST00000345016 CHIC1Q5VXU3 224 aa24.52■■□□□ 1.52
AP3D1-201ENST00000345016 HNRNPUL2Q1KMD3 747 aaKnown RBP24.32■■□□□ 1.48
AP3D1-201ENST00000345016 ITGAEP38570 1179 aa24.32■■□□□ 1.48
AP3D1-201ENST00000345016 DIEXFQ68CQ4 756 aaKnown RBP24.3■■□□□ 1.48
AP3D1-201ENST00000345016 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.27■■□□□ 1.48
AP3D1-201ENST00000345016 DAXXQ9UER7 740 aaPredicted RBP24.24■■□□□ 1.47
AP3D1-201ENST00000345016 POLR3GLQ9BT43 218 aa24.14■■□□□ 1.45
AP3D1-201ENST00000345016 GTF3C3Q9Y5Q9 886 aa24.09■■□□□ 1.45
AP3D1-201ENST00000345016 CNGB1Q14028 1251 aaPredicted RBP24.06■■□□□ 1.44
AP3D1-201ENST00000345016 RTL5Q5HYW3 569 aaPredicted RBP23.96■■□□□ 1.43
AP3D1-201ENST00000345016 BCANQ96GW7 911 aa23.86■■□□□ 1.41
AP3D1-201ENST00000345016 ACIN1Q9UKV3 1341 aaKnown RBP23.72■■□□□ 1.39
AP3D1-201ENST00000345016 ZNF316A6NFI3 1004 aaPredicted RBP23.7■■□□□ 1.38
AP3D1-201ENST00000345016 CLSPNQ9HAW4 1339 aa23.67■■□□□ 1.38
AP3D1-201ENST00000345016 NEUROD1Q13562 356 aa23.57■■□□□ 1.36
AP3D1-201ENST00000345016 CDK11AQ9UQ88 783 aaPredicted RBP23.55■■□□□ 1.36
AP3D1-201ENST00000345016 MYT1LQ9UL68 1186 aa23.55■■□□□ 1.36
AP3D1-201ENST00000345016 FAM50AQ14320 339 aaKnown RBP23.54■■□□□ 1.36
AP3D1-201ENST00000345016 ANP32CO43423 234 aa23.49■■□□□ 1.35
AP3D1-201ENST00000345016 SLC4A1APQ9BWU0 796 aaKnown RBP23.41■■□□□ 1.34
AP3D1-201ENST00000345016 TRIM52Q96A61 297 aa23.39■■□□□ 1.33
AP3D1-201ENST00000345016 ZNF326Q5BKZ1 582 aaKnown RBP23.22■■□□□ 1.31
AP3D1-201ENST00000345016 ANP32AP39687 249 aaKnown RBP23.16■■□□□ 1.3
AP3D1-201ENST00000345016 FKBP8Q14318 412 aa23.16■■□□□ 1.3
AP3D1-201ENST00000345016 SCAF1Q9H7N4 1312 aaKnown RBP23.12■■□□□ 1.29
AP3D1-201ENST00000345016 NPM2Q86SE8 214 aaKnown RBP23.06■■□□□ 1.28
AP3D1-201ENST00000345016 EIF5BO60841 1220 aaKnown RBP23.03■■□□□ 1.28
AP3D1-201ENST00000345016 CSRNP3Q8WYN3 585 aa22.99■■□□□ 1.27
AP3D1-201ENST00000345016 CANXP27824 592 aaKnown RBP22.94■■□□□ 1.26
AP3D1-201ENST00000345016 ZBTB47Q9UFB7 747 aaPredicted RBP22.93■■□□□ 1.26
AP3D1-201ENST00000345016 BCL11AQ9H165 835 aa22.92■■□□□ 1.26
AP3D1-201ENST00000345016 HNRNPUQ00839 825 aaKnown RBP eCLIP22.92■■□□□ 1.26
AP3D1-201ENST00000345016 DDX10Q13206 875 aaKnown RBP22.91■■□□□ 1.26
AP3D1-201ENST00000345016 DCAF1Q9Y4B6 1507 aa22.9■■□□□ 1.26
AP3D1-201ENST00000345016 PABPN1Q86U42 306 aaKnown RBP eCLIP22.85■■□□□ 1.253e-6■■□□□ 14.5
AP3D1-201ENST00000345016 P3H3Q8IVL6 736 aa22.83■■□□□ 1.25
AP3D1-201ENST00000345016 MIER1Q8N108 512 aa22.81■■□□□ 1.24
AP3D1-201ENST00000345016 NBR1Q14596 966 aa22.79■■□□□ 1.24
AP3D1-201ENST00000345016 FAM9BQ8IZU0 186 aa22.77■■□□□ 1.24
AP3D1-201ENST00000345016 TONSLQ96HA7 1378 aa22.71■■□□□ 1.23
AP3D1-201ENST00000345016 ARID3CA6NKF2 412 aa22.69■■□□□ 1.22
AP3D1-201ENST00000345016 CCDC136Q96JN2 1154 aa22.69■■□□□ 1.22
AP3D1-201ENST00000345016 SALL2Q9Y467 1007 aaPredicted RBP22.65■■□□□ 1.22
AP3D1-201ENST00000345016 IRX6P78412 446 aaPredicted RBP22.62■■□□□ 1.21
AP3D1-201ENST00000345016 ANP32BQ92688 251 aaKnown RBP22.61■■□□□ 1.21
AP3D1-201ENST00000345016 NEFMP07197 916 aa22.6■■□□□ 1.21
AP3D1-201ENST00000345016 HSP90AA1P07900 732 aaKnown RBP22.58■■□□□ 1.21
AP3D1-201ENST00000345016 ABCC9O60706 1549 aa22.58■■□□□ 1.2
AP3D1-201ENST00000345016 SLC24A1O60721 1099 aa22.57■■□□□ 1.2
AP3D1-201ENST00000345016 UPF2Q9HAU5 1272 aaKnown RBP22.56■■□□□ 1.2
AP3D1-201ENST00000345016 GLIPR1L2Q4G1C9 344 aa22.55■■□□□ 1.2
AP3D1-201ENST00000345016 ZNF777Q9ULD5 760 aaPredicted RBP22.54■■□□□ 1.2
AP3D1-201ENST00000345016 FBLN2P98095 1184 aa22.53■■□□□ 1.2
AP3D1-201ENST00000345016 MRS2Q9HD23 443 aa22.52■■□□□ 1.2
AP3D1-201ENST00000345016 TMC1Q8TDI8 760 aa22.52■■□□□ 1.19
AP3D1-201ENST00000345016 HIRIP3Q9BW71 556 aaPredicted RBP22.51■■□□□ 1.19
AP3D1-201ENST00000345016 ARXQ96QS3 562 aa22.5■■□□□ 1.19
AP3D1-201ENST00000345016 ANP32EQ9BTT0 268 aa22.48■■□□□ 1.19
AP3D1-201ENST00000345016 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.37■■□□□ 1.17
AP3D1-201ENST00000345016 CHIC2Q9UKJ5 165 aa22.36■■□□□ 1.17
AP3D1-201ENST00000345016 MYO15BQ96JP2 1530 aa22.35■■□□□ 1.17
AP3D1-201ENST00000345016 ZCCHC6Q5VYS8 1495 aaKnown RBP22.29■■□□□ 1.16
AP3D1-201ENST00000345016 SUPT16HQ9Y5B9 1047 aaKnown RBP22.25■■□□□ 1.15
AP3D1-201ENST00000345016 WDR43Q15061 677 aaKnown RBP eCLIP22.23■■□□□ 1.155e-6■■□□□ 12.1
AP3D1-201ENST00000345016 EIF4G2P78344 907 aaKnown RBP eCLIP22.23■■□□□ 1.15
AP3D1-201ENST00000345016 KDM2AQ9Y2K7 1162 aa22.2■■□□□ 1.14
AP3D1-201ENST00000345016 CHGAP10645 457 aaKnown RBP22.2■■□□□ 1.14
AP3D1-201ENST00000345016 SENP3-EIF4A1A0A087X0R7 540 aa22.17■■□□□ 1.14
AP3D1-201ENST00000345016 CLIP1P30622 1438 aa22.15■■□□□ 1.14
AP3D1-201ENST00000345016 DDRGK1Q96HY6 314 aa22.15■■□□□ 1.14
AP3D1-201ENST00000345016 RTN4Q9NQC3 1192 aaKnown RBP22.1■■□□□ 1.13
AP3D1-201ENST00000345016 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.09■■□□□ 1.134e-7■■□□□ 14.2
AP3D1-201ENST00000345016 BECN1Q14457 450 aa22.08■■□□□ 1.13
AP3D1-201ENST00000345016 TRIM44Q96DX7 344 aaPredicted RBP22.07■■□□□ 1.12
AP3D1-201ENST00000345016 MTUS2Q5JR59 1369 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms