RNA–Protein interactions for RNA: ENST00000344749.9

TCF3-202, Transcript of transcription factor 3, humanhuman

TSL 5 BASIC

Gene TCF3, Length 4,289 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-202ENST00000344749 NISCHQ9Y2I1 1504 aa23.99■■□□□ 1.43
TCF3-202ENST00000344749 DCAF8L2P0C7V8 631 aa23.3■■□□□ 1.32
TCF3-202ENST00000344749 SUPT5HO00267 1087 aaKnown RBP22.54■■□□□ 1.2
TCF3-202ENST00000344749 SHROOM4Q9ULL8 1493 aa22.51■■□□□ 1.19
TCF3-202ENST00000344749 EHMT2Q96KQ7 1210 aa21.54■■□□□ 1.04
TCF3-202ENST00000344749 FAM9AQ8IZU1 332 aaPredicted RBP21.15■□□□□ 0.98
TCF3-202ENST00000344749 PCGF6Q9BYE7 350 aa20.98■□□□□ 0.95
TCF3-202ENST00000344749 TRIM41Q8WV44 630 aa20.75■□□□□ 0.91
TCF3-202ENST00000344749 TTBK1Q5TCY1 1321 aaPredicted RBP20.75■□□□□ 0.91
TCF3-202ENST00000344749 CHIC1Q5VXU3 224 aa20.61■□□□□ 0.89
TCF3-202ENST00000344749 LOC105371045A0A1W2PR82 267 aa20.53■□□□□ 0.88
TCF3-202ENST00000344749 RANGAP1P46060 587 aaPredicted RBP20.47■□□□□ 0.87
TCF3-202ENST00000344749 PPARGC1BQ86YN6 1023 aaKnown RBP20.42■□□□□ 0.86
TCF3-202ENST00000344749 APLP2Q06481 763 aa20.36■□□□□ 0.85
TCF3-202ENST00000344749 UBTFP17480 764 aaKnown RBP20.26■□□□□ 0.83
TCF3-202ENST00000344749 ABCC9O60706 1549 aa20.22■□□□□ 0.83
TCF3-202ENST00000344749 CCER1Q8TC90 406 aaPredicted RBP20.15■□□□□ 0.82
TCF3-202ENST00000344749 HRCP23327 699 aa20.09■□□□□ 0.81
TCF3-202ENST00000344749 TRIM26Q12899 539 aaPredicted RBP20.08■□□□□ 0.8
TCF3-202ENST00000344749 PABPN1Q86U42 306 aaKnown RBP eCLIP19.99■□□□□ 0.791e-6■□□□□ 9.3
TCF3-202ENST00000344749 ZEB1P37275 1124 aaPredicted RBP19.98■□□□□ 0.79
TCF3-202ENST00000344749 ZCCHC6Q5VYS8 1495 aaKnown RBP19.97■□□□□ 0.79
TCF3-202ENST00000344749 ATP1B4Q9UN42 357 aaPredicted RBP19.94■□□□□ 0.78
TCF3-202ENST00000344749 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.67■□□□□ 0.74
TCF3-202ENST00000344749 HNRNPUL2Q1KMD3 747 aaKnown RBP19.67■□□□□ 0.74
TCF3-202ENST00000344749 PELP1Q8IZL8 1130 aaKnown RBP19.65■□□□□ 0.74
TCF3-202ENST00000344749 SCRIBQ14160 1630 aa19.63■□□□□ 0.73
TCF3-202ENST00000344749 ITGAEP38570 1179 aa19.62■□□□□ 0.73
TCF3-202ENST00000344749 YTHDC1Q96MU7 727 aaKnown RBP19.62■□□□□ 0.73
TCF3-202ENST00000344749 CCDC180Q9P1Z9 1646 aa19.61■□□□□ 0.73
TCF3-202ENST00000344749 CENPBP07199 599 aaPredicted RBP19.57■□□□□ 0.72
TCF3-202ENST00000344749 MYO15BQ96JP2 1530 aa19.47■□□□□ 0.71
TCF3-202ENST00000344749 CSRNP3Q8WYN3 585 aa19.3■□□□□ 0.68
TCF3-202ENST00000344749 RSF1Q96T23 1441 aaPredicted RBP19.27■□□□□ 0.68
TCF3-202ENST00000344749 MYT1Q01538 1121 aa19.25■□□□□ 0.67
TCF3-202ENST00000344749 DIEXFQ68CQ4 756 aaKnown RBP19.2■□□□□ 0.66
TCF3-202ENST00000344749 DCAF1Q9Y4B6 1507 aa19.13■□□□□ 0.65
TCF3-202ENST00000344749 FAM50AQ14320 339 aaKnown RBP19.1■□□□□ 0.65
TCF3-202ENST00000344749 P3H3Q8IVL6 736 aa19.06■□□□□ 0.64
TCF3-202ENST00000344749 CECR2Q9BXF3 1484 aa19.03■□□□□ 0.64
TCF3-202ENST00000344749 CNGB1Q14028 1251 aaPredicted RBP18.99■□□□□ 0.63
TCF3-202ENST00000344749 NEUROD1Q13562 356 aa18.97■□□□□ 0.63
TCF3-202ENST00000344749 POLR3GLQ9BT43 218 aa18.95■□□□□ 0.62
TCF3-202ENST00000344749 NEFLP07196 543 aa18.91■□□□□ 0.62
TCF3-202ENST00000344749 RB1CC1Q8TDY2 1594 aa18.88■□□□□ 0.61
TCF3-202ENST00000344749 ARID3CA6NKF2 412 aa18.88■□□□□ 0.61
TCF3-202ENST00000344749 NACADO15069 1562 aa18.87■□□□□ 0.61
TCF3-202ENST00000344749 ZNF316A6NFI3 1004 aaPredicted RBP18.85■□□□□ 0.61
TCF3-202ENST00000344749 GTF3C3Q9Y5Q9 886 aa18.8■□□□□ 0.6
TCF3-202ENST00000344749 TRIM52Q96A61 297 aa18.79■□□□□ 0.6
TCF3-202ENST00000344749 FBLN2P98095 1184 aa18.77■□□□□ 0.6
TCF3-202ENST00000344749 MROH2BQ7Z745 1585 aa18.75■□□□□ 0.59
TCF3-202ENST00000344749 MYT1LQ9UL68 1186 aa18.74■□□□□ 0.59
TCF3-202ENST00000344749 CEP162Q5TB80 1403 aa18.7■□□□□ 0.58
TCF3-202ENST00000344749 WRNQ14191 1432 aaPredicted RBP eCLIP18.67■□□□□ 0.581e-6■■■■■ 58.5
TCF3-202ENST00000344749 CLIP1P30622 1438 aa18.67■□□□□ 0.58
TCF3-202ENST00000344749 ERICH6Q7L0X2 663 aa18.65■□□□□ 0.58
TCF3-202ENST00000344749 BAZ1AQ9NRL2 1556 aaPredicted RBP18.64■□□□□ 0.57
TCF3-202ENST00000344749 ACIN1Q9UKV3 1341 aaKnown RBP18.63■□□□□ 0.57
TCF3-202ENST00000344749 SOGA1O94964 1423 aa18.62■□□□□ 0.57
TCF3-202ENST00000344749 ZNF326Q5BKZ1 582 aaKnown RBP18.59■□□□□ 0.57
TCF3-202ENST00000344749 BCANQ96GW7 911 aa18.57■□□□□ 0.56
TCF3-202ENST00000344749 BAZ1BQ9UIG0 1483 aaKnown RBP18.57■□□□□ 0.56
TCF3-202ENST00000344749 GOLGA3Q08378 1498 aa18.54■□□□□ 0.56
TCF3-202ENST00000344749 ABCC8Q09428 1581 aa18.53■□□□□ 0.56
TCF3-202ENST00000344749 TNIKQ9UKE5 1360 aa18.52■□□□□ 0.56
TCF3-202ENST00000344749 CCDC88BA6NC98 1476 aa18.51■□□□□ 0.55
TCF3-202ENST00000344749 EEA1Q15075 1411 aa18.5■□□□□ 0.55
TCF3-202ENST00000344749 ZNF777Q9ULD5 760 aaPredicted RBP18.49■□□□□ 0.55
TCF3-202ENST00000344749 WIZO95785 1651 aa18.48■□□□□ 0.55
TCF3-202ENST00000344749 ANP32CO43423 234 aa18.46■□□□□ 0.55
TCF3-202ENST00000344749 CHIC2Q9UKJ5 165 aa18.46■□□□□ 0.55
TCF3-202ENST00000344749 MIER1Q8N108 512 aa18.43■□□□□ 0.54
TCF3-202ENST00000344749 HIRIP3Q9BW71 556 aaPredicted RBP18.42■□□□□ 0.54
TCF3-202ENST00000344749 DDX10Q13206 875 aaKnown RBP18.42■□□□□ 0.54
TCF3-202ENST00000344749 SCAF1Q9H7N4 1312 aaKnown RBP18.39■□□□□ 0.53
TCF3-202ENST00000344749 CEP164Q9UPV0 1460 aa18.38■□□□□ 0.53
TCF3-202ENST00000344749 KIF27Q86VH2 1401 aa18.33■□□□□ 0.52
TCF3-202ENST00000344749 TONSLQ96HA7 1378 aa18.31■□□□□ 0.52
TCF3-202ENST00000344749 SLC4A1APQ9BWU0 796 aaKnown RBP18.31■□□□□ 0.52
TCF3-202ENST00000344749 MTUS2Q5JR59 1369 aa18.31■□□□□ 0.52
TCF3-202ENST00000344749 CDK11AQ9UQ88 783 aaPredicted RBP18.27■□□□□ 0.52
TCF3-202ENST00000344749 RRP7BPQ9NSQ0 103 aa18.25■□□□□ 0.51
TCF3-202ENST00000344749 RUSC2Q8N2Y8 1516 aa18.24■□□□□ 0.51
TCF3-202ENST00000344749 KANK4Q5T7N3 995 aaPredicted RBP18.23■□□□□ 0.51
TCF3-202ENST00000344749 TOP2AP11388 1531 aaKnown RBP18.21■□□□□ 0.5
TCF3-202ENST00000344749 SIN3AQ96ST3 1273 aa18.18■□□□□ 0.5
TCF3-202ENST00000344749 CUX2O14529 1486 aa18.17■□□□□ 0.5
TCF3-202ENST00000344749 CHMP7Q8WUX9 453 aaPredicted RBP18.15■□□□□ 0.5
TCF3-202ENST00000344749 FKBP8Q14318 412 aa18.14■□□□□ 0.49
TCF3-202ENST00000344749 CARMIL1Q5VZK9 1371 aa18.13■□□□□ 0.49
TCF3-202ENST00000344749 VPS8Q8N3P4 1428 aa18.12■□□□□ 0.49
TCF3-202ENST00000344749 HNRNPUQ00839 825 aaKnown RBP eCLIP18.12■□□□□ 0.49
TCF3-202ENST00000344749 SMARCA4P51532 1647 aa18.1■□□□□ 0.49
TCF3-202ENST00000344749 FAM9BQ8IZU0 186 aa18.1■□□□□ 0.49
TCF3-202ENST00000344749 ATAD2BQ9ULI0 1458 aa18.08■□□□□ 0.49
TCF3-202ENST00000344749 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.07■□□□□ 0.48
TCF3-202ENST00000344749 CCNB3Q8WWL7 1395 aa18.06■□□□□ 0.48
TCF3-202ENST00000344749 SMARCA2P51531 1590 aa18.05■□□□□ 0.48
TCF3-202ENST00000344749 RAPGEF2Q9Y4G8 1499 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms