RNA–Protein interactions for RNA: ENST00000344337.10

KPNA1-201, Transcript of karyopherin subunit alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KPNA1, Length 6,830 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KPNA1-201ENST00000344337 DCAF8L2P0C7V8 631 aa13.62□□□□□ -0.23
KPNA1-201ENST00000344337 SUPT5HO00267 1087 aaKnown RBP13.42□□□□□ -0.26
KPNA1-201ENST00000344337 EHMT2Q96KQ7 1210 aa13.39□□□□□ -0.27
KPNA1-201ENST00000344337 SHROOM4Q9ULL8 1493 aa13.3□□□□□ -0.28
KPNA1-201ENST00000344337 PCGF6Q9BYE7 350 aa12.96□□□□□ -0.33
KPNA1-201ENST00000344337 TTBK1Q5TCY1 1321 aaPredicted RBP12.89□□□□□ -0.35
KPNA1-201ENST00000344337 NISCHQ9Y2I1 1504 aa12.77□□□□□ -0.37
KPNA1-201ENST00000344337 FAM9AQ8IZU1 332 aaPredicted RBP12.75□□□□□ -0.37
KPNA1-201ENST00000344337 PPARGC1BQ86YN6 1023 aaKnown RBP12.68□□□□□ -0.38
KPNA1-201ENST00000344337 YTHDC1Q96MU7 727 aaKnown RBP12.44□□□□□ -0.42
KPNA1-201ENST00000344337 RANGAP1P46060 587 aaPredicted RBP12.42□□□□□ -0.42
KPNA1-201ENST00000344337 LOC105371045A0A1W2PR82 267 aa12.39□□□□□ -0.43
KPNA1-201ENST00000344337 HRCP23327 699 aa12.25□□□□□ -0.45
KPNA1-201ENST00000344337 CCER1Q8TC90 406 aaPredicted RBP12.23□□□□□ -0.45
KPNA1-201ENST00000344337 TRIM41Q8WV44 630 aa12.05□□□□□ -0.48
KPNA1-201ENST00000344337 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.02□□□□□ -0.49
KPNA1-201ENST00000344337 CENPBP07199 599 aaPredicted RBP11.99□□□□□ -0.49
KPNA1-201ENST00000344337 CHIC1Q5VXU3 224 aa11.97□□□□□ -0.49
KPNA1-201ENST00000344337 CNGB1Q14028 1251 aaPredicted RBP11.94□□□□□ -0.5
KPNA1-201ENST00000344337 TRIM26Q12899 539 aaPredicted RBP11.92□□□□□ -0.5
KPNA1-201ENST00000344337 ATP1B4Q9UN42 357 aaPredicted RBP11.9□□□□□ -0.51
KPNA1-201ENST00000344337 APLP2Q06481 763 aa11.88□□□□□ -0.51
KPNA1-201ENST00000344337 UBTFP17480 764 aaKnown RBP11.87□□□□□ -0.51
KPNA1-201ENST00000344337 MYT1Q01538 1121 aa11.86□□□□□ -0.51
KPNA1-201ENST00000344337 ITGAEP38570 1179 aa11.85□□□□□ -0.51
KPNA1-201ENST00000344337 GTF3C3Q9Y5Q9 886 aa11.85□□□□□ -0.51
KPNA1-201ENST00000344337 HNRNPUL2Q1KMD3 747 aaKnown RBP11.84□□□□□ -0.51
KPNA1-201ENST00000344337 PELP1Q8IZL8 1130 aaKnown RBP11.84□□□□□ -0.51
KPNA1-201ENST00000344337 ZEB1P37275 1124 aaPredicted RBP11.8□□□□□ -0.52
KPNA1-201ENST00000344337 ERICH6Q7L0X2 663 aa11.8□□□□□ -0.52
KPNA1-201ENST00000344337 BCANQ96GW7 911 aa11.8□□□□□ -0.52
KPNA1-201ENST00000344337 DIEXFQ68CQ4 756 aaKnown RBP11.75□□□□□ -0.53
KPNA1-201ENST00000344337 SCAF1Q9H7N4 1312 aaKnown RBP11.67□□□□□ -0.54
KPNA1-201ENST00000344337 POLR3GLQ9BT43 218 aa11.61□□□□□ -0.55
KPNA1-201ENST00000344337 NEUROD1Q13562 356 aa11.58□□□□□ -0.56
KPNA1-201ENST00000344337 NEFLP07196 543 aa11.55□□□□□ -0.56
KPNA1-201ENST00000344337 ACIN1Q9UKV3 1341 aaKnown RBP11.51□□□□□ -0.57
KPNA1-201ENST00000344337 MYO15BQ96JP2 1530 aa11.5□□□□□ -0.57
KPNA1-201ENST00000344337 SENP3-EIF4A1A0A087X0R7 540 aa11.38□□□□□ -0.59
KPNA1-201ENST00000344337 HIRIP3Q9BW71 556 aaPredicted RBP11.34□□□□□ -0.59
KPNA1-201ENST00000344337 IRX6P78412 446 aaPredicted RBP11.29□□□□□ -0.6
KPNA1-201ENST00000344337 MIER1Q8N108 512 aa11.29□□□□□ -0.6
KPNA1-201ENST00000344337 ZNF316A6NFI3 1004 aaPredicted RBP11.29□□□□□ -0.6
KPNA1-201ENST00000344337 FAM50AQ14320 339 aaKnown RBP11.26□□□□□ -0.61
KPNA1-201ENST00000344337 FKBP8Q14318 412 aa11.24□□□□□ -0.61
KPNA1-201ENST00000344337 BCL11AQ9H165 835 aa11.23□□□□□ -0.61
KPNA1-201ENST00000344337 TRIM52Q96A61 297 aa11.23□□□□□ -0.61
KPNA1-201ENST00000344337 ARID3CA6NKF2 412 aa11.2□□□□□ -0.62
KPNA1-201ENST00000344337 NBR1Q14596 966 aa11.19□□□□□ -0.62
KPNA1-201ENST00000344337 P3H3Q8IVL6 736 aa11.19□□□□□ -0.62
KPNA1-201ENST00000344337 PABPN1Q86U42 306 aaKnown RBP eCLIP11.17□□□□□ -0.62
KPNA1-201ENST00000344337 NPM2Q86SE8 214 aaKnown RBP11.17□□□□□ -0.62
KPNA1-201ENST00000344337 ZNF326Q5BKZ1 582 aaKnown RBP11.16□□□□□ -0.62
KPNA1-201ENST00000344337 DDX10Q13206 875 aaKnown RBP11.15□□□□□ -0.62
KPNA1-201ENST00000344337 SALL2Q9Y467 1007 aaPredicted RBP11.15□□□□□ -0.62
KPNA1-201ENST00000344337 DAXXQ9UER7 740 aaPredicted RBP11.09□□□□□ -0.63
KPNA1-201ENST00000344337 SLC4A1APQ9BWU0 796 aaKnown RBP11.07□□□□□ -0.64
KPNA1-201ENST00000344337 EIF5BO60841 1220 aaKnown RBP11.07□□□□□ -0.64
KPNA1-201ENST00000344337 RTL5Q5HYW3 569 aaPredicted RBP11.07□□□□□ -0.64
KPNA1-201ENST00000344337 ARXQ96QS3 562 aa11.07□□□□□ -0.64
KPNA1-201ENST00000344337 CDK11AQ9UQ88 783 aaPredicted RBP11.04□□□□□ -0.64
KPNA1-201ENST00000344337 RTN4Q9NQC3 1192 aaKnown RBP11.04□□□□□ -0.64
KPNA1-201ENST00000344337 CLSPNQ9HAW4 1339 aa11.03□□□□□ -0.64
KPNA1-201ENST00000344337 ANP32CO43423 234 aa11.02□□□□□ -0.64
KPNA1-201ENST00000344337 FAM9BQ8IZU0 186 aa11.02□□□□□ -0.65
KPNA1-201ENST00000344337 HNRNPUQ00839 825 aaKnown RBP eCLIP11□□□□□ -0.65
KPNA1-201ENST00000344337 MYT1LQ9UL68 1186 aa10.99□□□□□ -0.65
KPNA1-201ENST00000344337 DCAF1Q9Y4B6 1507 aa10.95□□□□□ -0.66
KPNA1-201ENST00000344337 ABCC9O60706 1549 aa10.93□□□□□ -0.66
KPNA1-201ENST00000344337 SENP3Q9H4L4 574 aaPredicted RBP10.92□□□□□ -0.66
KPNA1-201ENST00000344337 KCNH8Q96L42 1107 aa10.9□□□□□ -0.66
KPNA1-201ENST00000344337 CSRNP3Q8WYN3 585 aa10.89□□□□□ -0.67
KPNA1-201ENST00000344337 SUPT16HQ9Y5B9 1047 aaKnown RBP10.88□□□□□ -0.67
KPNA1-201ENST00000344337 CHIC2Q9UKJ5 165 aa10.87□□□□□ -0.67
KPNA1-201ENST00000344337 ANP32EQ9BTT0 268 aa10.84□□□□□ -0.67
KPNA1-201ENST00000344337 SIN3AQ96ST3 1273 aa10.82□□□□□ -0.68
KPNA1-201ENST00000344337 SCRIBQ14160 1630 aa10.8□□□□□ -0.68
KPNA1-201ENST00000344337 B4GALNT3Q6L9W6 998 aa10.78□□□□□ -0.68
KPNA1-201ENST00000344337 ANP32AP39687 249 aaKnown RBP10.78□□□□□ -0.68
KPNA1-201ENST00000344337 ZNF777Q9ULD5 760 aaPredicted RBP10.77□□□□□ -0.68
KPNA1-201ENST00000344337 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.77□□□□□ -0.69
KPNA1-201ENST00000344337 LAS1LQ9Y4W2 734 aaKnown RBP10.77□□□□□ -0.69
KPNA1-201ENST00000344337 CCDC136Q96JN2 1154 aa10.74□□□□□ -0.69
KPNA1-201ENST00000344337 FBLN2P98095 1184 aa10.74□□□□□ -0.69
KPNA1-201ENST00000344337 KDM2AQ9Y2K7 1162 aa10.73□□□□□ -0.69
KPNA1-201ENST00000344337 MRS2Q9HD23 443 aa10.71□□□□□ -0.69
KPNA1-201ENST00000344337 TSHZ2Q9NRE2 1034 aa10.71□□□□□ -0.69
KPNA1-201ENST00000344337 RBM19Q9Y4C8 960 aaKnown RBP10.71□□□□□ -0.7
KPNA1-201ENST00000344337 ZBTB47Q9UFB7 747 aaPredicted RBP10.7□□□□□ -0.7
KPNA1-201ENST00000344337 CCDC180Q9P1Z9 1646 aa10.7□□□□□ -0.7
KPNA1-201ENST00000344337 RRP7BPQ9NSQ0 103 aa10.68□□□□□ -0.7
KPNA1-201ENST00000344337 SLC24A1O60721 1099 aa10.68□□□□□ -0.7
KPNA1-201ENST00000344337 CANXP27824 592 aaKnown RBP10.67□□□□□ -0.7
KPNA1-201ENST00000344337 ARID4BQ4LE39 1312 aaPredicted RBP10.67□□□□□ -0.7
KPNA1-201ENST00000344337 TONSLQ96HA7 1378 aa10.66□□□□□ -0.7
KPNA1-201ENST00000344337 BAZ1BQ9UIG0 1483 aaKnown RBP10.64□□□□□ -0.71
KPNA1-201ENST00000344337 TPRNQ4KMQ1 711 aa10.64□□□□□ -0.71
KPNA1-201ENST00000344337 DEKP35659 375 aaKnown RBP10.62□□□□□ -0.71
KPNA1-201ENST00000344337 CEP162Q5TB80 1403 aa10.62□□□□□ -0.71
KPNA1-201ENST00000344337 TMC1Q8TDI8 760 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms