RNA–Protein interactions for RNA: ENST00000336233.9

LIPA-202, Transcript of lipase A, lysosomal acid type, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIPA, Length 2,782 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIPA-202ENST00000336233 NISCHQ9Y2I1 1504 aa30.29■■■□□ 2.44
LIPA-202ENST00000336233 CCDC180Q9P1Z9 1646 aa26.04■■□□□ 1.76
LIPA-202ENST00000336233 ZCCHC6Q5VYS8 1495 aaKnown RBP25.65■■□□□ 1.7
LIPA-202ENST00000336233 SHROOM4Q9ULL8 1493 aa25.27■■□□□ 1.64
LIPA-202ENST00000336233 DCAF1Q9Y4B6 1507 aa25.07■■□□□ 1.6
LIPA-202ENST00000336233 SUPT5HO00267 1087 aaKnown RBP24.7■■□□□ 1.54
LIPA-202ENST00000336233 DCAF8L2P0C7V8 631 aa24.61■■□□□ 1.53
LIPA-202ENST00000336233 MYO15BQ96JP2 1530 aa24.44■■□□□ 1.5
LIPA-202ENST00000336233 ABCC9O60706 1549 aa24.2■■□□□ 1.46
LIPA-202ENST00000336233 CHIC1Q5VXU3 224 aa24.14■■□□□ 1.46
LIPA-202ENST00000336233 SCRIBQ14160 1630 aa24.06■■□□□ 1.44
LIPA-202ENST00000336233 NACADO15069 1562 aa24.02■■□□□ 1.44
LIPA-202ENST00000336233 RSF1Q96T23 1441 aaPredicted RBP23.83■■□□□ 1.41
LIPA-202ENST00000336233 RB1CC1Q8TDY2 1594 aa23.66■■□□□ 1.38
LIPA-202ENST00000336233 CECR2Q9BXF3 1484 aa23.48■■□□□ 1.35
LIPA-202ENST00000336233 MROH2BQ7Z745 1585 aa23.45■■□□□ 1.35
LIPA-202ENST00000336233 BAZ1AQ9NRL2 1556 aaPredicted RBP23.32■■□□□ 1.32
LIPA-202ENST00000336233 WIZO95785 1651 aa23.32■■□□□ 1.32
LIPA-202ENST00000336233 UNC13AQ9UPW8 1703 aa23.24■■□□□ 1.31
LIPA-202ENST00000336233 LOC105371045A0A1W2PR82 267 aa23.23■■□□□ 1.31
LIPA-202ENST00000336233 TRIM41Q8WV44 630 aa23.16■■□□□ 1.3
LIPA-202ENST00000336233 HRCP23327 699 aa23.15■■□□□ 1.3
LIPA-202ENST00000336233 EIF4G1Q04637 1599 aaKnown RBP23.14■■□□□ 1.3
LIPA-202ENST00000336233 SMARCA4P51532 1647 aa23.13■■□□□ 1.29
LIPA-202ENST00000336233 TOP2AP11388 1531 aaKnown RBP23.09■■□□□ 1.29
LIPA-202ENST00000336233 PCGF6Q9BYE7 350 aa23.06■■□□□ 1.28
LIPA-202ENST00000336233 BICRAQ9NZM4 1560 aa22.94■■□□□ 1.26
LIPA-202ENST00000336233 SMARCA2P51531 1590 aa22.91■■□□□ 1.26
LIPA-202ENST00000336233 TRIM26Q12899 539 aaPredicted RBP22.86■■□□□ 1.25
LIPA-202ENST00000336233 CCDC88BA6NC98 1476 aa22.85■■□□□ 1.25
LIPA-202ENST00000336233 PEG3Q9GZU2 1588 aa22.82■■□□□ 1.24
LIPA-202ENST00000336233 FAM9AQ8IZU1 332 aaPredicted RBP22.76■■□□□ 1.23
LIPA-202ENST00000336233 ABCC8Q09428 1581 aa22.66■■□□□ 1.22
LIPA-202ENST00000336233 PABPN1Q86U42 306 aaKnown RBP eCLIP22.6■■□□□ 1.21
LIPA-202ENST00000336233 EEA1Q15075 1411 aa22.52■■□□□ 1.2
LIPA-202ENST00000336233 ATAD2BQ9ULI0 1458 aa22.51■■□□□ 1.19
LIPA-202ENST00000336233 PPARGC1BQ86YN6 1023 aaKnown RBP22.45■■□□□ 1.19
LIPA-202ENST00000336233 BAZ1BQ9UIG0 1483 aaKnown RBP22.41■■□□□ 1.18
LIPA-202ENST00000336233 SOGA1O94964 1423 aa22.4■■□□□ 1.18
LIPA-202ENST00000336233 ZEB1P37275 1124 aaPredicted RBP22.39■■□□□ 1.17
LIPA-202ENST00000336233 EHMT2Q96KQ7 1210 aa22.39■■□□□ 1.17
LIPA-202ENST00000336233 WRNQ14191 1432 aaPredicted RBP eCLIP22.38■■□□□ 1.17
LIPA-202ENST00000336233 TNIKQ9UKE5 1360 aa22.35■■□□□ 1.17
LIPA-202ENST00000336233 SYNJ1O43426 1573 aa22.31■■□□□ 1.16
LIPA-202ENST00000336233 CEP162Q5TB80 1403 aa22.29■■□□□ 1.16
LIPA-202ENST00000336233 RUSC2Q8N2Y8 1516 aa22.28■■□□□ 1.16
LIPA-202ENST00000336233 CSRNP3Q8WYN3 585 aa22.27■■□□□ 1.15
LIPA-202ENST00000336233 GOLGA3Q08378 1498 aa22.25■■□□□ 1.15
LIPA-202ENST00000336233 HMGXB3Q12766 1538 aa22.23■■□□□ 1.15
LIPA-202ENST00000336233 KIF21BO75037 1637 aa22.23■■□□□ 1.15
LIPA-202ENST00000336233 PELP1Q8IZL8 1130 aaKnown RBP22.16■■□□□ 1.14
LIPA-202ENST00000336233 NCAPD3P42695 1498 aa22.16■■□□□ 1.14
LIPA-202ENST00000336233 CEP164Q9UPV0 1460 aa22.16■■□□□ 1.14
LIPA-202ENST00000336233 TOP2BQ02880 1626 aa22.14■■□□□ 1.14
LIPA-202ENST00000336233 BIVM-ERCC5R4GMW8 1640 aa22.12■■□□□ 1.13
LIPA-202ENST00000336233 UBTFP17480 764 aaKnown RBP22.02■■□□□ 1.12
LIPA-202ENST00000336233 CFTRP13569 1480 aa21.92■■□□□ 1.1
LIPA-202ENST00000336233 CLIP1P30622 1438 aa21.91■■□□□ 1.1
LIPA-202ENST00000336233 RAPGEF2Q9Y4G8 1499 aa21.91■■□□□ 1.1
LIPA-202ENST00000336233 PRDM2Q13029 1718 aa21.91■■□□□ 1.1
LIPA-202ENST00000336233 ERICH3Q5RHP9 1530 aa21.91■■□□□ 1.1
LIPA-202ENST00000336233 CUX1P39880 1505 aa21.88■■□□□ 1.09
LIPA-202ENST00000336233 VPS8Q8N3P4 1428 aa21.86■■□□□ 1.09
LIPA-202ENST00000336233 PRXQ9BXM0 1461 aa21.84■■□□□ 1.09
LIPA-202ENST00000336233 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.79■■□□□ 1.08
LIPA-202ENST00000336233 CCER1Q8TC90 406 aaPredicted RBP21.78■■□□□ 1.08
LIPA-202ENST00000336233 KIF27Q86VH2 1401 aa21.73■■□□□ 1.07
LIPA-202ENST00000336233 TTBK1Q5TCY1 1321 aaPredicted RBP21.68■■□□□ 1.06
LIPA-202ENST00000336233 ARAP1Q96P48 1450 aa21.64■■□□□ 1.05
LIPA-202ENST00000336233 CADPSQ9ULU8 1353 aa21.63■■□□□ 1.05
LIPA-202ENST00000336233 MYT1Q01538 1121 aa21.61■■□□□ 1.05
LIPA-202ENST00000336233 CC2D2AQ9P2K1 1620 aa21.6■■□□□ 1.05
LIPA-202ENST00000336233 APLP2Q06481 763 aa21.55■■□□□ 1.04
LIPA-202ENST00000336233 CUX2O14529 1486 aa21.49■■□□□ 1.03
LIPA-202ENST00000336233 FGD5Q6ZNL6 1462 aa21.48■■□□□ 1.03
LIPA-202ENST00000336233 ARHGAP35Q9NRY4 1499 aa21.46■■□□□ 1.03
LIPA-202ENST00000336233 IGF1RP08069 1367 aa21.46■■□□□ 1.03
LIPA-202ENST00000336233 FANCD2Q9BXW9 1451 aa21.42■■□□□ 1.02
LIPA-202ENST00000336233 DNMBPQ6XZF7 1577 aa21.41■■□□□ 1.02
LIPA-202ENST00000336233 RANGAP1P46060 587 aaPredicted RBP21.4■■□□□ 1.02
LIPA-202ENST00000336233 HNRNPUL2Q1KMD3 747 aaKnown RBP21.38■■□□□ 1.01
LIPA-202ENST00000336233 RRBP1Q9P2E9 1410 aaKnown RBP21.37■■□□□ 1.01
LIPA-202ENST00000336233 MAP3K1Q13233 1512 aa21.36■■□□□ 1.01
LIPA-202ENST00000336233 CARMIL1Q5VZK9 1371 aa21.35■■□□□ 1.01
LIPA-202ENST00000336233 ABCA10Q8WWZ4 1543 aa21.32■■□□□ 1
LIPA-202ENST00000336233 DIEXFQ68CQ4 756 aaKnown RBP21.31■■□□□ 1
LIPA-202ENST00000336233 KANK4Q5T7N3 995 aaPredicted RBP21.3■■□□□ 1
LIPA-202ENST00000336233 TOPBP1Q92547 1522 aa21.3■■□□□ 1
LIPA-202ENST00000336233 CLSPNQ9HAW4 1339 aa21.28■■□□□ 1
LIPA-202ENST00000336233 LAMC3Q9Y6N6 1575 aa21.27■■□□□ 1
LIPA-202ENST00000336233 TIAM1Q13009 1591 aa21.27■■□□□ 1
LIPA-202ENST00000336233 POLA1P09884 1462 aaPredicted RBP21.26■□□□□ 0.99
LIPA-202ENST00000336233 ZNF316A6NFI3 1004 aaPredicted RBP21.26■□□□□ 0.99
LIPA-202ENST00000336233 CUL7Q14999 1698 aa21.25■□□□□ 0.99
LIPA-202ENST00000336233 WDR97A6NE52 1622 aa21.23■□□□□ 0.99
LIPA-202ENST00000336233 CFAP43Q8NDM7 1665 aa21.2■□□□□ 0.99
LIPA-202ENST00000336233 NESP48681 1621 aa21.2■□□□□ 0.98
LIPA-202ENST00000336233 CCNB3Q8WWL7 1395 aa21.19■□□□□ 0.98
LIPA-202ENST00000336233 RAD54L2Q9Y4B4 1467 aa21.19■□□□□ 0.98
LIPA-202ENST00000336233 DHX57Q6P158 1386 aaKnown RBP21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms