RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 AEBP2Q6ZN18 517 aaPredicted RBP16.17■□□□□ 0.18
HMGB1-201ENST00000326004 CHIC1Q5VXU3 224 aa16.04■□□□□ 0.16
HMGB1-201ENST00000326004 PHF23Q9BUL5 403 aaPredicted RBP14.08□□□□□ -0.16
HMGB1-201ENST00000326004 SENP3Q9H4L4 574 aaPredicted RBP13.76□□□□□ -0.21
HMGB1-201ENST00000326004 PLPPR3Q6T4P5 718 aa13.14□□□□□ -0.31
HMGB1-201ENST00000326004 FOXD1Q16676 465 aa12.7□□□□□ -0.38
HMGB1-201ENST00000326004 ADRA2BP18089 450 aa12.35□□□□□ -0.43
HMGB1-201ENST00000326004 PPP6R1Q9UPN7 881 aa12.35□□□□□ -0.43
HMGB1-201ENST00000326004 PIAS4Q8N2W9 510 aaPredicted RBP12.04□□□□□ -0.48
HMGB1-201ENST00000326004 MSH5O43196 834 aa11.69□□□□□ -0.54
HMGB1-201ENST00000326004 PPP4R3CPQ6ZMV5 832 aa11.57□□□□□ -0.56
HMGB1-201ENST00000326004 KCNA4P22459 653 aa11.5□□□□□ -0.57
HMGB1-201ENST00000326004 SCAF1Q9H7N4 1312 aaKnown RBP11.39□□□□□ -0.59
HMGB1-201ENST00000326004 NCBP3Q53F19 620 aaKnown RBP11.37□□□□□ -0.59
HMGB1-201ENST00000326004 CNKSR2Q8WXI2 1034 aa11.23□□□□□ -0.61
HMGB1-201ENST00000326004 NPM3O75607 178 aaKnown RBP11.15□□□□□ -0.62
HMGB1-201ENST00000326004 MAPK8IP2Q13387 824 aaPredicted RBP11.13□□□□□ -0.63
HMGB1-201ENST00000326004 SLC4A1APQ9BWU0 796 aaKnown RBP11.01□□□□□ -0.65
HMGB1-201ENST00000326004 DMRT2Q9Y5R5 561 aa11□□□□□ -0.65
HMGB1-201ENST00000326004 RNF216Q9NWF9 866 aaPredicted RBP10.96□□□□□ -0.65
HMGB1-201ENST00000326004 EHMT2Q96KQ7 1210 aa10.88□□□□□ -0.67
HMGB1-201ENST00000326004 DNAJC5BQ9UF47 199 aa10.88□□□□□ -0.67
HMGB1-201ENST00000326004 HOXD11P31277 338 aaPredicted RBP10.87□□□□□ -0.67
HMGB1-201ENST00000326004 POTEDQ86YR6 584 aa10.78□□□□□ -0.68
HMGB1-201ENST00000326004 CSRNP3Q8WYN3 585 aa10.69□□□□□ -0.7
HMGB1-201ENST00000326004 FOXD4L1Q9NU39 408 aa10.57□□□□□ -0.72
HMGB1-201ENST00000326004 ZBTB22O15209 634 aa10.56□□□□□ -0.72
HMGB1-201ENST00000326004 DCAF8L1A6NGE4 600 aa10.48□□□□□ -0.73
HMGB1-201ENST00000326004 SLC4A2P04920 1241 aa10.47□□□□□ -0.73
HMGB1-201ENST00000326004 MYCNP04198 464 aaPredicted RBP10.34□□□□□ -0.75
HMGB1-201ENST00000326004 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.33□□□□□ -0.762e-7■■■□□ 14.6
HMGB1-201ENST00000326004 ATXN8OSP0DMR3 200 aa10.21□□□□□ -0.77
HMGB1-201ENST00000326004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.19□□□□□ -0.78
HMGB1-201ENST00000326004 HNRNPUL2Q1KMD3 747 aaKnown RBP10.19□□□□□ -0.78
HMGB1-201ENST00000326004 U3KPZ7 1027 aaPredicted RBP10.18□□□□□ -0.78
HMGB1-201ENST00000326004 SAMD1Q6SPF0 538 aaPredicted RBP10.14□□□□□ -0.79
HMGB1-201ENST00000326004 APLP2Q06481 763 aa10.05□□□□□ -0.8
HMGB1-201ENST00000326004 RNF39Q9H2S5 420 aa10.01□□□□□ -0.81
HMGB1-201ENST00000326004 ATF5Q9Y2D1 282 aaPredicted RBP9.97□□□□□ -0.81
HMGB1-201ENST00000326004 C1QBPQ07021 282 aaKnown RBP9.93□□□□□ -0.82
HMGB1-201ENST00000326004 ZNF219Q9P2Y4 722 aaPredicted RBP9.84□□□□□ -0.83
HMGB1-201ENST00000326004 SPINK5Q9NQ38 1064 aaPredicted RBP9.81□□□□□ -0.84
HMGB1-201ENST00000326004 CAPN15O75808 1086 aa9.79□□□□□ -0.84
HMGB1-201ENST00000326004 TRHP20396 242 aaPredicted RBP9.78□□□□□ -0.84
HMGB1-201ENST00000326004 POLA2Q14181 598 aa9.67□□□□□ -0.86
HMGB1-201ENST00000326004 FKBP8Q14318 412 aa9.65□□□□□ -0.86
HMGB1-201ENST00000326004 FBLN2P98095 1184 aa9.62□□□□□ -0.87
HMGB1-201ENST00000326004 ABCB7O75027 752 aa9.6□□□□□ -0.87
HMGB1-201ENST00000326004 CACNB1Q02641 598 aaPredicted RBP9.6□□□□□ -0.87
HMGB1-201ENST00000326004 ZBTB12Q9Y330 459 aaPredicted RBP9.6□□□□□ -0.87
HMGB1-201ENST00000326004 DSG3P32926 999 aa9.58□□□□□ -0.88
HMGB1-201ENST00000326004 MKRN4PQ13434 485 aaPredicted RBP9.57□□□□□ -0.88
HMGB1-201ENST00000326004 SPDYE4A6NLX3 237 aa9.47□□□□□ -0.89
HMGB1-201ENST00000326004 PROM2Q8N271 834 aa9.37□□□□□ -0.91
HMGB1-201ENST00000326004 SPDYE2BA6NHP3 402 aa9.33□□□□□ -0.92
HMGB1-201ENST00000326004 SPDYE6P0CI01 402 aa9.33□□□□□ -0.92
HMGB1-201ENST00000326004 SPDYE2Q495Y8 402 aa9.33□□□□□ -0.92
HMGB1-201ENST00000326004 OSCARQ8IYS5 282 aa9.33□□□□□ -0.92
HMGB1-201ENST00000326004 FBXO3Q9UK99 471 aa9.32□□□□□ -0.92
HMGB1-201ENST00000326004 ZNF692Q9BU19 519 aaPredicted RBP9.3□□□□□ -0.92
HMGB1-201ENST00000326004 SSUH2Q9Y2M2 353 aa9.27□□□□□ -0.93
HMGB1-201ENST00000326004 AMER1Q5JTC6 1135 aaPredicted RBP9.19□□□□□ -0.94
HMGB1-201ENST00000326004 RBM42Q9BTD8 480 aaKnown RBP9.18□□□□□ -0.94
HMGB1-201ENST00000326004 PABPN1Q86U42 306 aaKnown RBP eCLIP9.17□□□□□ -0.94
HMGB1-201ENST00000326004 VASPP50552 380 aaPredicted RBP9.15□□□□□ -0.94
HMGB1-201ENST00000326004 STAG3Q9UJ98 1225 aa9.12□□□□□ -0.95
HMGB1-201ENST00000326004 RTN4Q9NQC3 1192 aaKnown RBP9.1□□□□□ -0.95
HMGB1-201ENST00000326004 AKT1S1Q96B36 256 aa9.09□□□□□ -0.95
HMGB1-201ENST00000326004 IFNLR1Q8IU57 520 aaPredicted RBP9.01□□□□□ -0.97
HMGB1-201ENST00000326004 SPDYE1Q8NFV5 336 aaPredicted RBP9.01□□□□□ -0.97
HMGB1-201ENST00000326004 PLCD3Q8N3E9 789 aa8.98□□□□□ -0.97
HMGB1-201ENST00000326004 REM2Q8IYK8 340 aaPredicted RBP8.97□□□□□ -0.97
HMGB1-201ENST00000326004 PLEKHG5O94827 1062 aa8.96□□□□□ -0.98
HMGB1-201ENST00000326004 MIER1Q8N108 512 aa8.96□□□□□ -0.98
HMGB1-201ENST00000326004 KLHL34Q8N239 644 aa8.94□□□□□ -0.98
HMGB1-201ENST00000326004 ZBTB47Q9UFB7 747 aaPredicted RBP8.93□□□□□ -0.98
HMGB1-201ENST00000326004 CLEC11AQ9Y240 323 aa8.92□□□□□ -0.98
HMGB1-201ENST00000326004 SPOCK2Q92563 424 aa8.91□□□□□ -0.98
HMGB1-201ENST00000326004 PRR29P0C7W0 189 aa8.89□□□□□ -0.99
HMGB1-201ENST00000326004 PITPNM1O00562 1244 aa8.86□□□□□ -0.99
HMGB1-201ENST00000326004 CREBZFQ9NS37 354 aa8.8□□□□□ -1
HMGB1-201ENST00000326004 PKD2Q13563 968 aa8.79□□□□□ -1
HMGB1-201ENST00000326004 MNX1P50219 401 aaPredicted RBP8.74□□□□□ -1.01
HMGB1-201ENST00000326004 ECM2O94769 699 aaPredicted RBP8.72□□□□□ -1.01
HMGB1-201ENST00000326004 NUBP1P53384 320 aa8.71□□□□□ -1.02
HMGB1-201ENST00000326004 GSE1Q14687 1217 aa8.71□□□□□ -1.02
HMGB1-201ENST00000326004 TRIM41Q8WV44 630 aa8.71□□□□□ -1.02
HMGB1-201ENST00000326004 CIZ1Q9ULV3 898 aaPredicted RBP8.71□□□□□ -1.02
HMGB1-201ENST00000326004 NPM1P06748 294 aaKnown RBP eCLIP8.7□□□□□ -1.02
HMGB1-201ENST00000326004 CHRDL2Q6WN34 429 aa8.68□□□□□ -1.02
HMGB1-201ENST00000326004 FXR2P51116 673 aaKnown RBP eCLIP8.67□□□□□ -1.02
HMGB1-201ENST00000326004 FAM212AQ96EL1 285 aa8.67□□□□□ -1.02
HMGB1-201ENST00000326004 CHADLQ6NUI6 762 aa8.66□□□□□ -1.02
HMGB1-201ENST00000326004 DCAF8L2P0C7V8 631 aa8.65□□□□□ -1.02
HMGB1-201ENST00000326004 DCAF8Q5TAQ9 597 aa8.65□□□□□ -1.02
HMGB1-201ENST00000326004 PRKAR2AP13861 404 aaKnown RBP8.64□□□□□ -1.03
HMGB1-201ENST00000326004 FARP1Q9Y4F1 1045 aaPredicted RBP8.63□□□□□ -1.03
HMGB1-201ENST00000326004 RASEFQ8IZ41 740 aa8.61□□□□□ -1.03
HMGB1-201ENST00000326004 RGL2O15211 777 aa8.6□□□□□ -1.03
HMGB1-201ENST00000326004 PIP4P2Q8N4L2 257 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms