RNA–Protein interactions for RNA: ENST00000322723.8

NCL-201, Transcript of nucleolin, humanhuman

APPRIS P1 TSL 2 BASIC

Gene NCL, Length 4,034 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCL-201ENST00000322723 NISCHQ9Y2I1 1504 aa26.56■■□□□ 1.84
NCL-201ENST00000322723 CCDC180Q9P1Z9 1646 aa23.14■■□□□ 1.3
NCL-201ENST00000322723 ZCCHC6Q5VYS8 1495 aaKnown RBP22.51■■□□□ 1.19
NCL-201ENST00000322723 DCAF1Q9Y4B6 1507 aa22.16■■□□□ 1.14
NCL-201ENST00000322723 MYO15BQ96JP2 1530 aa21.71■■□□□ 1.07
NCL-201ENST00000322723 SHROOM4Q9ULL8 1493 aa21.54■■□□□ 1.04
NCL-201ENST00000322723 NACADO15069 1562 aa21.24■□□□□ 0.99
NCL-201ENST00000322723 ABCC9O60706 1549 aa21.22■□□□□ 0.99
NCL-201ENST00000322723 SCRIBQ14160 1630 aa21.04■□□□□ 0.96
NCL-201ENST00000322723 DCAF8L2P0C7V8 631 aa20.94■□□□□ 0.94
NCL-201ENST00000322723 SUPT5HO00267 1087 aaKnown RBP20.87■□□□□ 0.93
NCL-201ENST00000322723 RB1CC1Q8TDY2 1594 aa20.86■□□□□ 0.93
NCL-201ENST00000322723 UNC13AQ9UPW8 1703 aa20.78■□□□□ 0.92
NCL-201ENST00000322723 RSF1Q96T23 1441 aaPredicted RBP20.74■□□□□ 0.91
NCL-201ENST00000322723 CHIC1Q5VXU3 224 aa20.56■□□□□ 0.88
NCL-201ENST00000322723 MROH2BQ7Z745 1585 aa20.51■□□□□ 0.87
NCL-201ENST00000322723 CECR2Q9BXF3 1484 aa20.5■□□□□ 0.87
NCL-201ENST00000322723 BAZ1AQ9NRL2 1556 aaPredicted RBP20.48■□□□□ 0.87
NCL-201ENST00000322723 WIZO95785 1651 aa20.42■□□□□ 0.86
NCL-201ENST00000322723 EIF4G1Q04637 1599 aaKnown RBP20.41■□□□□ 0.86
NCL-201ENST00000322723 BICRAQ9NZM4 1560 aa20.41■□□□□ 0.86
NCL-201ENST00000322723 SMARCA4P51532 1647 aa20.36■□□□□ 0.85
NCL-201ENST00000322723 PEG3Q9GZU2 1588 aa20.25■□□□□ 0.83
NCL-201ENST00000322723 TOP2AP11388 1531 aaKnown RBP20.25■□□□□ 0.83
NCL-201ENST00000322723 SMARCA2P51531 1590 aa20.1■□□□□ 0.81
NCL-201ENST00000322723 CCDC88BA6NC98 1476 aa19.93■□□□□ 0.78
NCL-201ENST00000322723 ATAD2BQ9ULI0 1458 aa19.77■□□□□ 0.76
NCL-201ENST00000322723 HMGXB3Q12766 1538 aa19.68■□□□□ 0.74
NCL-201ENST00000322723 TRIM41Q8WV44 630 aa19.67■□□□□ 0.74
NCL-201ENST00000322723 ABCC8Q09428 1581 aa19.66■□□□□ 0.74
NCL-201ENST00000322723 LOC105371045A0A1W2PR82 267 aa19.64■□□□□ 0.74
NCL-201ENST00000322723 PABPN1Q86U42 306 aaKnown RBP eCLIP19.61■□□□□ 0.73
NCL-201ENST00000322723 BAZ1BQ9UIG0 1483 aaKnown RBP19.59■□□□□ 0.73
NCL-201ENST00000322723 NCAPD3P42695 1498 aa19.55■□□□□ 0.72
NCL-201ENST00000322723 PRDM2Q13029 1718 aa19.54■□□□□ 0.72
NCL-201ENST00000322723 SYNJ1O43426 1573 aa19.5■□□□□ 0.71
NCL-201ENST00000322723 BIVM-ERCC5R4GMW8 1640 aa19.5■□□□□ 0.71
NCL-201ENST00000322723 EEA1Q15075 1411 aa19.48■□□□□ 0.71
NCL-201ENST00000322723 TOP2BQ02880 1626 aa19.42■□□□□ 0.7
NCL-201ENST00000322723 KIF21BO75037 1637 aa19.39■□□□□ 0.69
NCL-201ENST00000322723 WRNQ14191 1432 aaPredicted RBP eCLIP19.39■□□□□ 0.69
NCL-201ENST00000322723 SOGA1O94964 1423 aa19.33■□□□□ 0.68
NCL-201ENST00000322723 HRCP23327 699 aa19.33■□□□□ 0.68
NCL-201ENST00000322723 RUSC2Q8N2Y8 1516 aa19.28■□□□□ 0.68
NCL-201ENST00000322723 CFTRP13569 1480 aa19.26■□□□□ 0.67
NCL-201ENST00000322723 TRIM26Q12899 539 aaPredicted RBP19.24■□□□□ 0.67
NCL-201ENST00000322723 TNIKQ9UKE5 1360 aa19.24■□□□□ 0.67
NCL-201ENST00000322723 PCGF6Q9BYE7 350 aa19.21■□□□□ 0.67
NCL-201ENST00000322723 GOLGA3Q08378 1498 aa19.19■□□□□ 0.66
NCL-201ENST00000322723 CUX1P39880 1505 aa19.17■□□□□ 0.66
NCL-201ENST00000322723 FAM9AQ8IZU1 332 aaPredicted RBP19.16■□□□□ 0.66
NCL-201ENST00000322723 CC2D2AQ9P2K1 1620 aa19.15■□□□□ 0.66
NCL-201ENST00000322723 CEP164Q9UPV0 1460 aa19.14■□□□□ 0.65
NCL-201ENST00000322723 CEP162Q5TB80 1403 aa19.13■□□□□ 0.65
NCL-201ENST00000322723 ERICH3Q5RHP9 1530 aa19.12■□□□□ 0.65
NCL-201ENST00000322723 CSRNP3Q8WYN3 585 aa19.08■□□□□ 0.64
NCL-201ENST00000322723 PRXQ9BXM0 1461 aa19.03■□□□□ 0.64
NCL-201ENST00000322723 RAPGEF2Q9Y4G8 1499 aa18.95■□□□□ 0.62
NCL-201ENST00000322723 CADPSQ9ULU8 1353 aa18.93■□□□□ 0.62
NCL-201ENST00000322723 WDR97A6NE52 1622 aa18.88■□□□□ 0.61
NCL-201ENST00000322723 DNMBPQ6XZF7 1577 aa18.84■□□□□ 0.61
NCL-201ENST00000322723 LAMC3Q9Y6N6 1575 aa18.84■□□□□ 0.61
NCL-201ENST00000322723 VPS8Q8N3P4 1428 aa18.82■□□□□ 0.6
NCL-201ENST00000322723 KIF27Q86VH2 1401 aa18.81■□□□□ 0.6
NCL-201ENST00000322723 CLIP1P30622 1438 aa18.8■□□□□ 0.6
NCL-201ENST00000322723 ARAP1Q96P48 1450 aa18.77■□□□□ 0.6
NCL-201ENST00000322723 FGD5Q6ZNL6 1462 aa18.76■□□□□ 0.59
NCL-201ENST00000322723 FANCD2Q9BXW9 1451 aa18.75■□□□□ 0.59
NCL-201ENST00000322723 ZEB1P37275 1124 aaPredicted RBP18.72■□□□□ 0.59
NCL-201ENST00000322723 EHMT2Q96KQ7 1210 aa18.71■□□□□ 0.59
NCL-201ENST00000322723 ABCA10Q8WWZ4 1543 aa18.71■□□□□ 0.59
NCL-201ENST00000322723 TOPBP1Q92547 1522 aa18.69■□□□□ 0.58
NCL-201ENST00000322723 CUL7Q14999 1698 aa18.68■□□□□ 0.58
NCL-201ENST00000322723 ABCA5Q8WWZ7 1642 aa18.66■□□□□ 0.58
NCL-201ENST00000322723 PELP1Q8IZL8 1130 aaKnown RBP18.66■□□□□ 0.58
NCL-201ENST00000322723 PPARGC1BQ86YN6 1023 aaKnown RBP18.65■□□□□ 0.58
NCL-201ENST00000322723 IGF1RP08069 1367 aa18.65■□□□□ 0.58
NCL-201ENST00000322723 UBTFP17480 764 aaKnown RBP18.64■□□□□ 0.57
NCL-201ENST00000322723 CUX2O14529 1486 aa18.63■□□□□ 0.57
NCL-201ENST00000322723 KIF21AQ7Z4S6 1674 aa18.62■□□□□ 0.57
NCL-201ENST00000322723 POLA1P09884 1462 aaPredicted RBP18.62■□□□□ 0.57
NCL-201ENST00000322723 CTTNBP2Q8WZ74 1663 aa18.62■□□□□ 0.57
NCL-201ENST00000322723 ARHGAP35Q9NRY4 1499 aa18.62■□□□□ 0.57
NCL-201ENST00000322723 NESP48681 1621 aa18.61■□□□□ 0.57
NCL-201ENST00000322723 MAP3K1Q13233 1512 aa18.61■□□□□ 0.57
NCL-201ENST00000322723 URB2Q14146 1524 aaKnown RBP18.6■□□□□ 0.57
NCL-201ENST00000322723 CFAP43Q8NDM7 1665 aa18.55■□□□□ 0.56
NCL-201ENST00000322723 TARBP1Q13395 1621 aaKnown RBP18.55■□□□□ 0.56
NCL-201ENST00000322723 EFCAB5A4FU69 1503 aa18.48■□□□□ 0.55
NCL-201ENST00000322723 RAD54L2Q9Y4B4 1467 aa18.47■□□□□ 0.55
NCL-201ENST00000322723 CARMIL1Q5VZK9 1371 aa18.47■□□□□ 0.55
NCL-201ENST00000322723 TIAM1Q13009 1591 aa18.46■□□□□ 0.55
NCL-201ENST00000322723 SAMD9Q5K651 1589 aa18.45■□□□□ 0.54
NCL-201ENST00000322723 RRBP1Q9P2E9 1410 aaKnown RBP18.45■□□□□ 0.54
NCL-201ENST00000322723 PBRM1Q86U86 1689 aa18.44■□□□□ 0.54
NCL-201ENST00000322723 PDS5BQ9NTI5 1447 aa18.43■□□□□ 0.54
NCL-201ENST00000322723 AQRO60306 1485 aaKnown RBP eCLIP18.41■□□□□ 0.541e-14■■■□□ 18.7
NCL-201ENST00000322723 PCF11O94913 1555 aaKnown RBP18.38■□□□□ 0.53
NCL-201ENST00000322723 LRRIQ1Q96JM4 1722 aa18.37■□□□□ 0.53
NCL-201ENST00000322723 WDR62O43379 1518 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms