RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 NISCHQ9Y2I1 1504 aa18.05■□□□□ 0.48
CLK1-201ENST00000321356 AEBP2Q6ZN18 517 aaPredicted RBP16.07■□□□□ 0.16
CLK1-201ENST00000321356 CCDC180Q9P1Z9 1646 aa15.39■□□□□ 0.05
CLK1-201ENST00000321356 CHIC1Q5VXU3 224 aa15.33■□□□□ 0.04
CLK1-201ENST00000321356 ZCCHC6Q5VYS8 1495 aaKnown RBP15.31■□□□□ 0.04
CLK1-201ENST00000321356 SHROOM4Q9ULL8 1493 aa15.25■□□□□ 0.03
CLK1-201ENST00000321356 SUPT5HO00267 1087 aaKnown RBP14.98□□□□□ -0.01
CLK1-201ENST00000321356 DCAF1Q9Y4B6 1507 aa14.9□□□□□ -0.02
CLK1-201ENST00000321356 MYO15BQ96JP2 1530 aa14.7□□□□□ -0.06
CLK1-201ENST00000321356 DCAF8L2P0C7V8 631 aa14.68□□□□□ -0.06
CLK1-201ENST00000321356 ABCC9O60706 1549 aa14.47□□□□□ -0.09
CLK1-201ENST00000321356 HRCP23327 699 aa14.39□□□□□ -0.11
CLK1-201ENST00000321356 SCRIBQ14160 1630 aa14.31□□□□□ -0.12
CLK1-201ENST00000321356 RSF1Q96T23 1441 aaPredicted RBP14.29□□□□□ -0.12
CLK1-201ENST00000321356 PCGF6Q9BYE7 350 aa14.24□□□□□ -0.13
CLK1-201ENST00000321356 LOC105371045A0A1W2PR82 267 aa14.19□□□□□ -0.14
CLK1-201ENST00000321356 RB1CC1Q8TDY2 1594 aa14.18□□□□□ -0.14
CLK1-201ENST00000321356 NACADO15069 1562 aa14.17□□□□□ -0.14
CLK1-201ENST00000321356 TRIM26Q12899 539 aaPredicted RBP14.04□□□□□ -0.16
CLK1-201ENST00000321356 CECR2Q9BXF3 1484 aa14.02□□□□□ -0.17
CLK1-201ENST00000321356 MROH2BQ7Z745 1585 aa14.01□□□□□ -0.17
CLK1-201ENST00000321356 TRIM41Q8WV44 630 aa14□□□□□ -0.17
CLK1-201ENST00000321356 PPARGC1BQ86YN6 1023 aaKnown RBP13.97□□□□□ -0.17
CLK1-201ENST00000321356 WIZO95785 1651 aa13.93□□□□□ -0.18
CLK1-201ENST00000321356 BAZ1AQ9NRL2 1556 aaPredicted RBP13.92□□□□□ -0.18
CLK1-201ENST00000321356 EIF4G1Q04637 1599 aaKnown RBP13.88□□□□□ -0.19
CLK1-201ENST00000321356 FAM9AQ8IZU1 332 aaPredicted RBP13.81□□□□□ -0.2
CLK1-201ENST00000321356 ZEB1P37275 1124 aaPredicted RBP13.78□□□□□ -0.2
CLK1-201ENST00000321356 TOP2AP11388 1531 aaKnown RBP13.76□□□□□ -0.21
CLK1-201ENST00000321356 SMARCA4P51532 1647 aa13.74□□□□□ -0.21
CLK1-201ENST00000321356 SENP3Q9H4L4 574 aaPredicted RBP13.73□□□□□ -0.21
CLK1-201ENST00000321356 UNC13AQ9UPW8 1703 aa13.73□□□□□ -0.21
CLK1-201ENST00000321356 SMARCA2P51531 1590 aa13.68□□□□□ -0.22
CLK1-201ENST00000321356 CCDC88BA6NC98 1476 aa13.65□□□□□ -0.22
CLK1-201ENST00000321356 ABCC8Q09428 1581 aa13.62□□□□□ -0.23
CLK1-201ENST00000321356 EHMT2Q96KQ7 1210 aa13.61□□□□□ -0.23
CLK1-201ENST00000321356 WRNQ14191 1432 aaPredicted RBP eCLIP13.57□□□□□ -0.24
CLK1-201ENST00000321356 PHF23Q9BUL5 403 aaPredicted RBP13.55□□□□□ -0.24
CLK1-201ENST00000321356 BICRAQ9NZM4 1560 aa13.54□□□□□ -0.24
CLK1-201ENST00000321356 PEG3Q9GZU2 1588 aa13.53□□□□□ -0.24
CLK1-201ENST00000321356 EEA1Q15075 1411 aa13.53□□□□□ -0.24
CLK1-201ENST00000321356 SOGA1O94964 1423 aa13.49□□□□□ -0.25
CLK1-201ENST00000321356 CEP162Q5TB80 1403 aa13.49□□□□□ -0.25
CLK1-201ENST00000321356 TNIKQ9UKE5 1360 aa13.49□□□□□ -0.25
CLK1-201ENST00000321356 RUSC2Q8N2Y8 1516 aa13.42□□□□□ -0.26
CLK1-201ENST00000321356 CSRNP3Q8WYN3 585 aa13.41□□□□□ -0.26
CLK1-201ENST00000321356 GOLGA3Q08378 1498 aa13.4□□□□□ -0.26
CLK1-201ENST00000321356 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.38□□□□□ -0.27
CLK1-201ENST00000321356 CCER1Q8TC90 406 aaPredicted RBP13.36□□□□□ -0.27
CLK1-201ENST00000321356 SYNJ1O43426 1573 aa13.36□□□□□ -0.27
CLK1-201ENST00000321356 KIF21BO75037 1637 aa13.36□□□□□ -0.27
CLK1-201ENST00000321356 PABPN1Q86U42 306 aaKnown RBP eCLIP13.35□□□□□ -0.27
CLK1-201ENST00000321356 ATAD2BQ9ULI0 1458 aa13.34□□□□□ -0.27
CLK1-201ENST00000321356 CEP164Q9UPV0 1460 aa13.33□□□□□ -0.28
CLK1-201ENST00000321356 UBTFP17480 764 aaKnown RBP13.29□□□□□ -0.28
CLK1-201ENST00000321356 BAZ1BQ9UIG0 1483 aaKnown RBP13.29□□□□□ -0.28
CLK1-201ENST00000321356 SCAF1Q9H7N4 1312 aaKnown RBP13.26□□□□□ -0.29
CLK1-201ENST00000321356 TOP2BQ02880 1626 aa13.23□□□□□ -0.29
CLK1-201ENST00000321356 CLIP1P30622 1438 aa13.22□□□□□ -0.29
CLK1-201ENST00000321356 TTBK1Q5TCY1 1321 aaPredicted RBP13.22□□□□□ -0.29
CLK1-201ENST00000321356 VPS8Q8N3P4 1428 aa13.2□□□□□ -0.3
CLK1-201ENST00000321356 BIVM-ERCC5R4GMW8 1640 aa13.2□□□□□ -0.3
CLK1-201ENST00000321356 RAPGEF2Q9Y4G8 1499 aa13.18□□□□□ -0.3
CLK1-201ENST00000321356 DIEXFQ68CQ4 756 aaKnown RBP13.16□□□□□ -0.3
CLK1-201ENST00000321356 HMGXB3Q12766 1538 aa13.13□□□□□ -0.31
CLK1-201ENST00000321356 ERICH3Q5RHP9 1530 aa13.13□□□□□ -0.31
CLK1-201ENST00000321356 ACIN1Q9UKV3 1341 aaKnown RBP13.13□□□□□ -0.31
CLK1-201ENST00000321356 PELP1Q8IZL8 1130 aaKnown RBP13.12□□□□□ -0.31
CLK1-201ENST00000321356 NCAPD3P42695 1498 aa13.1□□□□□ -0.31
CLK1-201ENST00000321356 PRXQ9BXM0 1461 aa13.1□□□□□ -0.31
CLK1-201ENST00000321356 NEUROD1Q13562 356 aa13.08□□□□□ -0.32
CLK1-201ENST00000321356 ZNF316A6NFI3 1004 aaPredicted RBP13.08□□□□□ -0.32
CLK1-201ENST00000321356 CUX1P39880 1505 aa13.05□□□□□ -0.32
CLK1-201ENST00000321356 ARAP1Q96P48 1450 aa13.04□□□□□ -0.32
CLK1-201ENST00000321356 CENPBP07199 599 aaPredicted RBP13.04□□□□□ -0.32
CLK1-201ENST00000321356 HNRNPUL2Q1KMD3 747 aaKnown RBP13.03□□□□□ -0.32
CLK1-201ENST00000321356 APLP2Q06481 763 aa13.02□□□□□ -0.32
CLK1-201ENST00000321356 CFTRP13569 1480 aa13□□□□□ -0.33
CLK1-201ENST00000321356 KIF27Q86VH2 1401 aa12.98□□□□□ -0.33
CLK1-201ENST00000321356 PRDM2Q13029 1718 aa12.98□□□□□ -0.33
CLK1-201ENST00000321356 CLSPNQ9HAW4 1339 aa12.96□□□□□ -0.34
CLK1-201ENST00000321356 GTF3C3Q9Y5Q9 886 aa12.94□□□□□ -0.34
CLK1-201ENST00000321356 RRBP1Q9P2E9 1410 aaKnown RBP12.93□□□□□ -0.34
CLK1-201ENST00000321356 RANGAP1P46060 587 aaPredicted RBP12.91□□□□□ -0.34
CLK1-201ENST00000321356 DHX57Q6P158 1386 aaKnown RBP12.91□□□□□ -0.34
CLK1-201ENST00000321356 CUX2O14529 1486 aa12.9□□□□□ -0.34
CLK1-201ENST00000321356 ARHGAP35Q9NRY4 1499 aa12.9□□□□□ -0.34
CLK1-201ENST00000321356 KANK4Q5T7N3 995 aaPredicted RBP12.89□□□□□ -0.35
CLK1-201ENST00000321356 MIER1Q8N108 512 aa12.87□□□□□ -0.35
CLK1-201ENST00000321356 MAP3K1Q13233 1512 aa12.84□□□□□ -0.35
CLK1-201ENST00000321356 IGF1RP08069 1367 aa12.83□□□□□ -0.36
CLK1-201ENST00000321356 CCNB3Q8WWL7 1395 aa12.82□□□□□ -0.36
CLK1-201ENST00000321356 CADPSQ9ULU8 1353 aa12.81□□□□□ -0.36
CLK1-201ENST00000321356 TIAM1Q13009 1591 aa12.8□□□□□ -0.36
CLK1-201ENST00000321356 FGD5Q6ZNL6 1462 aa12.78□□□□□ -0.36
CLK1-201ENST00000321356 FOXD1Q16676 465 aa12.78□□□□□ -0.36
CLK1-201ENST00000321356 YTHDC1Q96MU7 727 aaKnown RBP12.78□□□□□ -0.36
CLK1-201ENST00000321356 CARMIL1Q5VZK9 1371 aa12.76□□□□□ -0.37
CLK1-201ENST00000321356 CFAP43Q8NDM7 1665 aa12.74□□□□□ -0.37
CLK1-201ENST00000321356 LRRC9Q6ZRR7 1453 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms