RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 NISCHQ9Y2I1 1504 aa35.9■■■■□ 3.34
COL9A1-201ENST00000320755 SHROOM4Q9ULL8 1493 aa31.04■■■□□ 2.56
COL9A1-201ENST00000320755 SUPT5HO00267 1087 aaKnown RBP30.46■■■□□ 2.47
COL9A1-201ENST00000320755 DCAF8L2P0C7V8 631 aa30.39■■■□□ 2.46
COL9A1-201ENST00000320755 CCDC180Q9P1Z9 1646 aa30.31■■■□□ 2.44
COL9A1-201ENST00000320755 ZCCHC6Q5VYS8 1495 aaKnown RBP30.3■■■□□ 2.44
COL9A1-201ENST00000320755 CHIC1Q5VXU3 224 aa29.39■■■□□ 2.3
COL9A1-201ENST00000320755 DCAF1Q9Y4B6 1507 aa29.24■■■□□ 2.27
COL9A1-201ENST00000320755 MYO15BQ96JP2 1530 aa29.19■■■□□ 2.26
COL9A1-201ENST00000320755 SCRIBQ14160 1630 aa28.74■■■□□ 2.19
COL9A1-201ENST00000320755 LOC105371045A0A1W2PR82 267 aa28.7■■■□□ 2.18
COL9A1-201ENST00000320755 PCGF6Q9BYE7 350 aa28.62■■■□□ 2.17
COL9A1-201ENST00000320755 ABCC9O60706 1549 aa28.57■■■□□ 2.16
COL9A1-201ENST00000320755 RSF1Q96T23 1441 aaPredicted RBP28.48■■■□□ 2.15
COL9A1-201ENST00000320755 HRCP23327 699 aa28.39■■■□□ 2.14
COL9A1-201ENST00000320755 TRIM41Q8WV44 630 aa28.26■■■□□ 2.11
COL9A1-201ENST00000320755 FAM9AQ8IZU1 332 aaPredicted RBP28.22■■■□□ 2.11
COL9A1-201ENST00000320755 RB1CC1Q8TDY2 1594 aa28.16■■■□□ 2.1
COL9A1-201ENST00000320755 CECR2Q9BXF3 1484 aa28.16■■■□□ 2.1
COL9A1-201ENST00000320755 NACADO15069 1562 aa28.15■■■□□ 2.1
COL9A1-201ENST00000320755 EHMT2Q96KQ7 1210 aa28.15■■■□□ 2.1
COL9A1-201ENST00000320755 PPARGC1BQ86YN6 1023 aaKnown RBP28.03■■■□□ 2.08
COL9A1-201ENST00000320755 MROH2BQ7Z745 1585 aa27.99■■■□□ 2.07
COL9A1-201ENST00000320755 TRIM26Q12899 539 aaPredicted RBP27.9■■■□□ 2.06
COL9A1-201ENST00000320755 WIZO95785 1651 aa27.83■■■□□ 2.05
COL9A1-201ENST00000320755 BAZ1AQ9NRL2 1556 aaPredicted RBP27.55■■■□□ 2
COL9A1-201ENST00000320755 PABPN1Q86U42 306 aaKnown RBP eCLIP27.48■■□□□ 1.99
COL9A1-201ENST00000320755 SMARCA4P51532 1647 aa27.32■■□□□ 1.96
COL9A1-201ENST00000320755 CCDC88BA6NC98 1476 aa27.3■■□□□ 1.96
COL9A1-201ENST00000320755 ABCC8Q09428 1581 aa27.29■■□□□ 1.96
COL9A1-201ENST00000320755 UNC13AQ9UPW8 1703 aa27.28■■□□□ 1.96
COL9A1-201ENST00000320755 TOP2AP11388 1531 aaKnown RBP27.28■■□□□ 1.96
COL9A1-201ENST00000320755 EIF4G1Q04637 1599 aaKnown RBP27.2■■□□□ 1.95
COL9A1-201ENST00000320755 ZEB1P37275 1124 aaPredicted RBP27.19■■□□□ 1.94
COL9A1-201ENST00000320755 TTBK1Q5TCY1 1321 aaPredicted RBP27.19■■□□□ 1.94
COL9A1-201ENST00000320755 SMARCA2P51531 1590 aa27.16■■□□□ 1.94
COL9A1-201ENST00000320755 SOGA1O94964 1423 aa27.06■■□□□ 1.92
COL9A1-201ENST00000320755 UBTFP17480 764 aaKnown RBP27■■□□□ 1.91
COL9A1-201ENST00000320755 BICRAQ9NZM4 1560 aa27■■□□□ 1.91
COL9A1-201ENST00000320755 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.98■■□□□ 1.91
COL9A1-201ENST00000320755 CSRNP3Q8WYN3 585 aa26.94■■□□□ 1.9
COL9A1-201ENST00000320755 RUSC2Q8N2Y8 1516 aa26.93■■□□□ 1.9
COL9A1-201ENST00000320755 CCER1Q8TC90 406 aaPredicted RBP26.88■■□□□ 1.89
COL9A1-201ENST00000320755 CEP162Q5TB80 1403 aa26.87■■□□□ 1.89
COL9A1-201ENST00000320755 WRNQ14191 1432 aaPredicted RBP eCLIP26.79■■□□□ 1.88
COL9A1-201ENST00000320755 TNIKQ9UKE5 1360 aa26.76■■□□□ 1.87
COL9A1-201ENST00000320755 ATAD2BQ9ULI0 1458 aa26.7■■□□□ 1.87
COL9A1-201ENST00000320755 EEA1Q15075 1411 aa26.69■■□□□ 1.86
COL9A1-201ENST00000320755 RANGAP1P46060 587 aaPredicted RBP26.69■■□□□ 1.86
COL9A1-201ENST00000320755 BAZ1BQ9UIG0 1483 aaKnown RBP26.67■■□□□ 1.86
COL9A1-201ENST00000320755 PEG3Q9GZU2 1588 aa26.64■■□□□ 1.86
COL9A1-201ENST00000320755 GOLGA3Q08378 1498 aa26.61■■□□□ 1.85
COL9A1-201ENST00000320755 SYNJ1O43426 1573 aa26.59■■□□□ 1.85
COL9A1-201ENST00000320755 CEP164Q9UPV0 1460 aa26.45■■□□□ 1.82
COL9A1-201ENST00000320755 HNRNPUL2Q1KMD3 747 aaKnown RBP26.42■■□□□ 1.82
COL9A1-201ENST00000320755 CLIP1P30622 1438 aa26.4■■□□□ 1.82
COL9A1-201ENST00000320755 APLP2Q06481 763 aa26.36■■□□□ 1.81
COL9A1-201ENST00000320755 RAPGEF2Q9Y4G8 1499 aa26.36■■□□□ 1.81
COL9A1-201ENST00000320755 KIF21BO75037 1637 aa26.29■■□□□ 1.8
COL9A1-201ENST00000320755 DIEXFQ68CQ4 756 aaKnown RBP26.26■■□□□ 1.79
COL9A1-201ENST00000320755 VPS8Q8N3P4 1428 aa26.2■■□□□ 1.78
COL9A1-201ENST00000320755 SCAF1Q9H7N4 1312 aaKnown RBP26.2■■□□□ 1.78
COL9A1-201ENST00000320755 TOP2BQ02880 1626 aa26.18■■□□□ 1.78
COL9A1-201ENST00000320755 NCAPD3P42695 1498 aa26.12■■□□□ 1.77
COL9A1-201ENST00000320755 CUX1P39880 1505 aa26.03■■□□□ 1.76
COL9A1-201ENST00000320755 HMGXB3Q12766 1538 aa26.02■■□□□ 1.76
COL9A1-201ENST00000320755 ZNF316A6NFI3 1004 aaPredicted RBP26.02■■□□□ 1.76
COL9A1-201ENST00000320755 BIVM-ERCC5R4GMW8 1640 aa26.01■■□□□ 1.75
COL9A1-201ENST00000320755 NEUROD1Q13562 356 aa25.99■■□□□ 1.75
COL9A1-201ENST00000320755 PRXQ9BXM0 1461 aa25.97■■□□□ 1.75
COL9A1-201ENST00000320755 KANK4Q5T7N3 995 aaPredicted RBP25.96■■□□□ 1.75
COL9A1-201ENST00000320755 KIF27Q86VH2 1401 aa25.96■■□□□ 1.75
COL9A1-201ENST00000320755 ACIN1Q9UKV3 1341 aaKnown RBP25.94■■□□□ 1.74
COL9A1-201ENST00000320755 CFTRP13569 1480 aa25.93■■□□□ 1.74
COL9A1-201ENST00000320755 ARAP1Q96P48 1450 aa25.88■■□□□ 1.73
COL9A1-201ENST00000320755 ERICH3Q5RHP9 1530 aa25.87■■□□□ 1.73
COL9A1-201ENST00000320755 YTHDC1Q96MU7 727 aaKnown RBP25.83■■□□□ 1.73
COL9A1-201ENST00000320755 CENPBP07199 599 aaPredicted RBP25.83■■□□□ 1.73
COL9A1-201ENST00000320755 ITGAEP38570 1179 aa25.82■■□□□ 1.72
COL9A1-201ENST00000320755 CUX2O14529 1486 aa25.78■■□□□ 1.72
COL9A1-201ENST00000320755 GTF3C3Q9Y5Q9 886 aa25.74■■□□□ 1.71
COL9A1-201ENST00000320755 CADPSQ9ULU8 1353 aa25.74■■□□□ 1.71
COL9A1-201ENST00000320755 MIER1Q8N108 512 aa25.72■■□□□ 1.71
COL9A1-201ENST00000320755 IGF1RP08069 1367 aa25.71■■□□□ 1.71
COL9A1-201ENST00000320755 ARHGAP35Q9NRY4 1499 aa25.69■■□□□ 1.7
COL9A1-201ENST00000320755 P3H3Q8IVL6 736 aa25.67■■□□□ 1.7
COL9A1-201ENST00000320755 ATP1B4Q9UN42 357 aaPredicted RBP25.66■■□□□ 1.7
COL9A1-201ENST00000320755 CARMIL1Q5VZK9 1371 aa25.64■■□□□ 1.69
COL9A1-201ENST00000320755 FGD5Q6ZNL6 1462 aa25.62■■□□□ 1.69
COL9A1-201ENST00000320755 DHX57Q6P158 1386 aaKnown RBP25.62■■□□□ 1.69
COL9A1-201ENST00000320755 CCNB3Q8WWL7 1395 aa25.56■■□□□ 1.68
COL9A1-201ENST00000320755 CC2D2AQ9P2K1 1620 aa25.54■■□□□ 1.68
COL9A1-201ENST00000320755 RRBP1Q9P2E9 1410 aaKnown RBP25.52■■□□□ 1.68
COL9A1-201ENST00000320755 FANCD2Q9BXW9 1451 aa25.49■■□□□ 1.67
COL9A1-201ENST00000320755 PRDM2Q13029 1718 aa25.49■■□□□ 1.67
COL9A1-201ENST00000320755 CLSPNQ9HAW4 1339 aa25.47■■□□□ 1.67
COL9A1-201ENST00000320755 FAM50AQ14320 339 aaKnown RBP25.46■■□□□ 1.67
COL9A1-201ENST00000320755 RAD54L2Q9Y4B4 1467 aa25.46■■□□□ 1.67
COL9A1-201ENST00000320755 NESP48681 1621 aa25.42■■□□□ 1.66
COL9A1-201ENST00000320755 PELP1Q8IZL8 1130 aaKnown RBP25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms