RNA–Protein interactions for RNA: ENST00000312123.13

GAPVD1-203, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene GAPVD1, Length 4,320 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-203ENST00000312123 DCAF8L2P0C7V8 631 aa12.42□□□□□ -0.42
GAPVD1-203ENST00000312123 SUPT5HO00267 1087 aaKnown RBP11.97□□□□□ -0.49
GAPVD1-203ENST00000312123 NISCHQ9Y2I1 1504 aa11.88□□□□□ -0.51
GAPVD1-203ENST00000312123 SHROOM4Q9ULL8 1493 aa11.77□□□□□ -0.52
GAPVD1-203ENST00000312123 EHMT2Q96KQ7 1210 aa11.62□□□□□ -0.55
GAPVD1-203ENST00000312123 FAM9AQ8IZU1 332 aaPredicted RBP11.31□□□□□ -0.6
GAPVD1-203ENST00000312123 PCGF6Q9BYE7 350 aa11.28□□□□□ -0.6
GAPVD1-203ENST00000312123 TTBK1Q5TCY1 1321 aaPredicted RBP11.21□□□□□ -0.61
GAPVD1-203ENST00000312123 APLP2Q06481 763 aa11.04□□□□□ -0.64
GAPVD1-203ENST00000312123 RANGAP1P46060 587 aaPredicted RBP11.01□□□□□ -0.65
GAPVD1-203ENST00000312123 TRIM41Q8WV44 630 aa10.98□□□□□ -0.65
GAPVD1-203ENST00000312123 PPARGC1BQ86YN6 1023 aaKnown RBP10.91□□□□□ -0.66
GAPVD1-203ENST00000312123 CCER1Q8TC90 406 aaPredicted RBP10.9□□□□□ -0.66
GAPVD1-203ENST00000312123 PELP1Q8IZL8 1130 aaKnown RBP10.88□□□□□ -0.67
GAPVD1-203ENST00000312123 UBTFP17480 764 aaKnown RBP10.81□□□□□ -0.68
GAPVD1-203ENST00000312123 LOC105371045A0A1W2PR82 267 aa10.79□□□□□ -0.68
GAPVD1-203ENST00000312123 ZEB1P37275 1124 aaPredicted RBP10.79□□□□□ -0.68
GAPVD1-203ENST00000312123 CENPBP07199 599 aaPredicted RBP10.77□□□□□ -0.69
GAPVD1-203ENST00000312123 ATP1B4Q9UN42 357 aaPredicted RBP10.77□□□□□ -0.69
GAPVD1-203ENST00000312123 YTHDC1Q96MU7 727 aaKnown RBP10.75□□□□□ -0.69
GAPVD1-203ENST00000312123 CHIC1Q5VXU3 224 aa10.72□□□□□ -0.69
GAPVD1-203ENST00000312123 HRCP23327 699 aa10.7□□□□□ -0.7
GAPVD1-203ENST00000312123 TRIM26Q12899 539 aaPredicted RBP10.67□□□□□ -0.7
GAPVD1-203ENST00000312123 ITGAEP38570 1179 aa10.55□□□□□ -0.72
GAPVD1-203ENST00000312123 HNRNPUL2Q1KMD3 747 aaKnown RBP10.53□□□□□ -0.72
GAPVD1-203ENST00000312123 ERICH6Q7L0X2 663 aa10.52□□□□□ -0.73
GAPVD1-203ENST00000312123 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.49□□□□□ -0.73
GAPVD1-203ENST00000312123 NEFLP07196 543 aa10.47□□□□□ -0.73
GAPVD1-203ENST00000312123 CNGB1Q14028 1251 aaPredicted RBP10.4□□□□□ -0.74
GAPVD1-203ENST00000312123 POLR3GLQ9BT43 218 aa10.36□□□□□ -0.75
GAPVD1-203ENST00000312123 DIEXFQ68CQ4 756 aaKnown RBP10.34□□□□□ -0.75
GAPVD1-203ENST00000312123 PABPN1Q86U42 306 aaKnown RBP eCLIP10.27□□□□□ -0.77
GAPVD1-203ENST00000312123 GTF3C3Q9Y5Q9 886 aa10.2□□□□□ -0.78
GAPVD1-203ENST00000312123 FAM50AQ14320 339 aaKnown RBP10.2□□□□□ -0.78
GAPVD1-203ENST00000312123 ABCC9O60706 1549 aa10.19□□□□□ -0.78
GAPVD1-203ENST00000312123 MYT1LQ9UL68 1186 aa10.19□□□□□ -0.78
GAPVD1-203ENST00000312123 NEUROD1Q13562 356 aa10.18□□□□□ -0.78
GAPVD1-203ENST00000312123 MYT1Q01538 1121 aa10.17□□□□□ -0.78
GAPVD1-203ENST00000312123 BCANQ96GW7 911 aa10.16□□□□□ -0.78
GAPVD1-203ENST00000312123 TRIM52Q96A61 297 aa10.09□□□□□ -0.79
GAPVD1-203ENST00000312123 ZNF316A6NFI3 1004 aaPredicted RBP10.07□□□□□ -0.8
GAPVD1-203ENST00000312123 DAXXQ9UER7 740 aaPredicted RBP10.07□□□□□ -0.8
GAPVD1-203ENST00000312123 P3H3Q8IVL6 736 aa10.06□□□□□ -0.8
GAPVD1-203ENST00000312123 CSRNP3Q8WYN3 585 aa10.05□□□□□ -0.8
GAPVD1-203ENST00000312123 CCDC180Q9P1Z9 1646 aa10.04□□□□□ -0.8
GAPVD1-203ENST00000312123 SLC4A1APQ9BWU0 796 aaKnown RBP10.04□□□□□ -0.8
GAPVD1-203ENST00000312123 ZNF326Q5BKZ1 582 aaKnown RBP10.03□□□□□ -0.8
GAPVD1-203ENST00000312123 ACIN1Q9UKV3 1341 aaKnown RBP10.03□□□□□ -0.8
GAPVD1-203ENST00000312123 ARID3CA6NKF2 412 aa10.01□□□□□ -0.81
GAPVD1-203ENST00000312123 ANP32CO43423 234 aa9.98□□□□□ -0.81
GAPVD1-203ENST00000312123 CLSPNQ9HAW4 1339 aa9.96□□□□□ -0.82
GAPVD1-203ENST00000312123 FBLN2P98095 1184 aa9.94□□□□□ -0.82
GAPVD1-203ENST00000312123 RTL5Q5HYW3 569 aaPredicted RBP9.92□□□□□ -0.82
GAPVD1-203ENST00000312123 DDX10Q13206 875 aaKnown RBP9.87□□□□□ -0.83
GAPVD1-203ENST00000312123 CDK11AQ9UQ88 783 aaPredicted RBP9.87□□□□□ -0.83
GAPVD1-203ENST00000312123 MYO15BQ96JP2 1530 aa9.87□□□□□ -0.83
GAPVD1-203ENST00000312123 DCAF1Q9Y4B6 1507 aa9.85□□□□□ -0.83
GAPVD1-203ENST00000312123 ZNF777Q9ULD5 760 aaPredicted RBP9.84□□□□□ -0.83
GAPVD1-203ENST00000312123 SCAF1Q9H7N4 1312 aaKnown RBP9.84□□□□□ -0.83
GAPVD1-203ENST00000312123 FKBP8Q14318 412 aa9.84□□□□□ -0.83
GAPVD1-203ENST00000312123 BCL11AQ9H165 835 aa9.83□□□□□ -0.84
GAPVD1-203ENST00000312123 ZCCHC6Q5VYS8 1495 aaKnown RBP9.83□□□□□ -0.84
GAPVD1-203ENST00000312123 HIRIP3Q9BW71 556 aaPredicted RBP9.82□□□□□ -0.84
GAPVD1-203ENST00000312123 MIER1Q8N108 512 aa9.82□□□□□ -0.84
GAPVD1-203ENST00000312123 SCRIBQ14160 1630 aa9.82□□□□□ -0.84
GAPVD1-203ENST00000312123 HNRNPUQ00839 825 aaKnown RBP eCLIP9.79□□□□□ -0.84
GAPVD1-203ENST00000312123 CHIC2Q9UKJ5 165 aa9.78□□□□□ -0.84
GAPVD1-203ENST00000312123 SALL2Q9Y467 1007 aaPredicted RBP9.77□□□□□ -0.85
GAPVD1-203ENST00000312123 FAM9BQ8IZU0 186 aa9.77□□□□□ -0.85
GAPVD1-203ENST00000312123 NPM2Q86SE8 214 aaKnown RBP9.75□□□□□ -0.85
GAPVD1-203ENST00000312123 TONSLQ96HA7 1378 aa9.75□□□□□ -0.85
GAPVD1-203ENST00000312123 IRX6P78412 446 aaPredicted RBP9.72□□□□□ -0.85
GAPVD1-203ENST00000312123 CANXP27824 592 aaKnown RBP9.71□□□□□ -0.86
GAPVD1-203ENST00000312123 SENP3-EIF4A1A0A087X0R7 540 aa9.69□□□□□ -0.86
GAPVD1-203ENST00000312123 ANP32AP39687 249 aaKnown RBP9.68□□□□□ -0.86
GAPVD1-203ENST00000312123 SLC24A1O60721 1099 aa9.67□□□□□ -0.86
GAPVD1-203ENST00000312123 RSF1Q96T23 1441 aaPredicted RBP9.67□□□□□ -0.86
GAPVD1-203ENST00000312123 CLIP1P30622 1438 aa9.66□□□□□ -0.86
GAPVD1-203ENST00000312123 KDM2AQ9Y2K7 1162 aa9.65□□□□□ -0.86
GAPVD1-203ENST00000312123 MRS2Q9HD23 443 aa9.65□□□□□ -0.87
GAPVD1-203ENST00000312123 CHGAP10645 457 aaKnown RBP9.64□□□□□ -0.87
GAPVD1-203ENST00000312123 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.64□□□□□ -0.874e-9■□□□□ 10.4
GAPVD1-203ENST00000312123 ZBTB47Q9UFB7 747 aaPredicted RBP9.63□□□□□ -0.87
GAPVD1-203ENST00000312123 TMC1Q8TDI8 760 aa9.63□□□□□ -0.87
GAPVD1-203ENST00000312123 RRP7BPQ9NSQ0 103 aa9.63□□□□□ -0.87
GAPVD1-203ENST00000312123 CEP162Q5TB80 1403 aa9.62□□□□□ -0.87
GAPVD1-203ENST00000312123 CCDC136Q96JN2 1154 aa9.61□□□□□ -0.87
GAPVD1-203ENST00000312123 NBR1Q14596 966 aa9.6□□□□□ -0.87
GAPVD1-203ENST00000312123 MTUS2Q5JR59 1369 aa9.6□□□□□ -0.87
GAPVD1-203ENST00000312123 NEFMP07197 916 aa9.58□□□□□ -0.88
GAPVD1-203ENST00000312123 SIN3AQ96ST3 1273 aa9.57□□□□□ -0.88
GAPVD1-203ENST00000312123 SENP3Q9H4L4 574 aaPredicted RBP9.57□□□□□ -0.88
GAPVD1-203ENST00000312123 EIF4G2P78344 907 aaKnown RBP eCLIP9.55□□□□□ -0.88
GAPVD1-203ENST00000312123 TSPY4P0CV99 314 aa9.55□□□□□ -0.88
GAPVD1-203ENST00000312123 TSPY10P0CW01 314 aa9.55□□□□□ -0.88
GAPVD1-203ENST00000312123 EIF5BO60841 1220 aaKnown RBP9.53□□□□□ -0.88
GAPVD1-203ENST00000312123 PLPPR3Q6T4P5 718 aa9.53□□□□□ -0.88
GAPVD1-203ENST00000312123 RGL3Q3MIN7 710 aa9.52□□□□□ -0.89
GAPVD1-203ENST00000312123 SUPT16HQ9Y5B9 1047 aaKnown RBP9.52□□□□□ -0.89
GAPVD1-203ENST00000312123 ARXQ96QS3 562 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms