RNA–Protein interactions for RNA: ENST00000305866.9

VPS50-202, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS50, Length 3,613 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-202ENST00000305866 NISCHQ9Y2I1 1504 aa11.85□□□□□ -0.51
VPS50-202ENST00000305866 CCDC180Q9P1Z9 1646 aa10.38□□□□□ -0.75
VPS50-202ENST00000305866 ZCCHC6Q5VYS8 1495 aaKnown RBP10.1□□□□□ -0.79
VPS50-202ENST00000305866 DCAF1Q9Y4B6 1507 aa10.05□□□□□ -0.8
VPS50-202ENST00000305866 MYO15BQ96JP2 1530 aa9.84□□□□□ -0.83
VPS50-202ENST00000305866 ABCC9O60706 1549 aa9.54□□□□□ -0.88
VPS50-202ENST00000305866 SHROOM4Q9ULL8 1493 aa9.49□□□□□ -0.89
VPS50-202ENST00000305866 NACADO15069 1562 aa9.45□□□□□ -0.9
VPS50-202ENST00000305866 CHIC1Q5VXU3 224 aa9.43□□□□□ -0.9
VPS50-202ENST00000305866 HRCP23327 699 aa9.42□□□□□ -0.9
VPS50-202ENST00000305866 EIF4G1Q04637 1599 aaKnown RBP9.35□□□□□ -0.91
VPS50-202ENST00000305866 RB1CC1Q8TDY2 1594 aa9.29□□□□□ -0.92
VPS50-202ENST00000305866 RSF1Q96T23 1441 aaPredicted RBP9.25□□□□□ -0.93
VPS50-202ENST00000305866 SUPT5HO00267 1087 aaKnown RBP9.24□□□□□ -0.93
VPS50-202ENST00000305866 SCRIBQ14160 1630 aa9.21□□□□□ -0.94
VPS50-202ENST00000305866 BAZ1AQ9NRL2 1556 aaPredicted RBP9.18□□□□□ -0.94
VPS50-202ENST00000305866 UNC13AQ9UPW8 1703 aa9.17□□□□□ -0.94
VPS50-202ENST00000305866 PPARGC1BQ86YN6 1023 aaKnown RBP9.16□□□□□ -0.94
VPS50-202ENST00000305866 PEG3Q9GZU2 1588 aa9.13□□□□□ -0.95
VPS50-202ENST00000305866 MROH2BQ7Z745 1585 aa9.09□□□□□ -0.95
VPS50-202ENST00000305866 TOP2AP11388 1531 aaKnown RBP9.05□□□□□ -0.96
VPS50-202ENST00000305866 PCGF6Q9BYE7 350 aa9.05□□□□□ -0.96
VPS50-202ENST00000305866 WIZO95785 1651 aa9.05□□□□□ -0.96
VPS50-202ENST00000305866 SMARCA4P51532 1647 aa9.05□□□□□ -0.96
VPS50-202ENST00000305866 LOC105371045A0A1W2PR82 267 aa9.04□□□□□ -0.96
VPS50-202ENST00000305866 CECR2Q9BXF3 1484 aa9.02□□□□□ -0.96
VPS50-202ENST00000305866 BICRAQ9NZM4 1560 aa9.02□□□□□ -0.97
VPS50-202ENST00000305866 SMARCA2P51531 1590 aa8.96□□□□□ -0.97
VPS50-202ENST00000305866 TRIM26Q12899 539 aaPredicted RBP8.95□□□□□ -0.98
VPS50-202ENST00000305866 WRNQ14191 1432 aaPredicted RBP eCLIP8.88□□□□□ -0.99
VPS50-202ENST00000305866 SCAF1Q9H7N4 1312 aaKnown RBP8.85□□□□□ -0.99
VPS50-202ENST00000305866 CCDC88BA6NC98 1476 aa8.84□□□□□ -0.99
VPS50-202ENST00000305866 DCAF8L2P0C7V8 631 aa8.84□□□□□ -1
VPS50-202ENST00000305866 EEA1Q15075 1411 aa8.81□□□□□ -1
VPS50-202ENST00000305866 ABCC8Q09428 1581 aa8.79□□□□□ -1
VPS50-202ENST00000305866 HMGXB3Q12766 1538 aa8.78□□□□□ -1
VPS50-202ENST00000305866 KIF21BO75037 1637 aa8.77□□□□□ -1.01
VPS50-202ENST00000305866 BIVM-ERCC5R4GMW8 1640 aa8.77□□□□□ -1.01
VPS50-202ENST00000305866 PRDM2Q13029 1718 aa8.76□□□□□ -1.01
VPS50-202ENST00000305866 ATAD2BQ9ULI0 1458 aa8.73□□□□□ -1.01
VPS50-202ENST00000305866 TOP2BQ02880 1626 aa8.7□□□□□ -1.02
VPS50-202ENST00000305866 RUSC2Q8N2Y8 1516 aa8.7□□□□□ -1.02
VPS50-202ENST00000305866 ZEB1P37275 1124 aaPredicted RBP8.7□□□□□ -1.02
VPS50-202ENST00000305866 SYNJ1O43426 1573 aa8.7□□□□□ -1.02
VPS50-202ENST00000305866 NCAPD3P42695 1498 aa8.68□□□□□ -1.02
VPS50-202ENST00000305866 BAZ1BQ9UIG0 1483 aaKnown RBP8.67□□□□□ -1.02
VPS50-202ENST00000305866 TNIKQ9UKE5 1360 aa8.67□□□□□ -1.02
VPS50-202ENST00000305866 TRIM41Q8WV44 630 aa8.65□□□□□ -1.02
VPS50-202ENST00000305866 SOGA1O94964 1423 aa8.65□□□□□ -1.02
VPS50-202ENST00000305866 ERICH3Q5RHP9 1530 aa8.63□□□□□ -1.03
VPS50-202ENST00000305866 CEP162Q5TB80 1403 aa8.63□□□□□ -1.03
VPS50-202ENST00000305866 GOLGA3Q08378 1498 aa8.59□□□□□ -1.03
VPS50-202ENST00000305866 NEUROD1Q13562 356 aa8.59□□□□□ -1.04
VPS50-202ENST00000305866 CEP164Q9UPV0 1460 aa8.57□□□□□ -1.04
VPS50-202ENST00000305866 ACIN1Q9UKV3 1341 aaKnown RBP8.57□□□□□ -1.04
VPS50-202ENST00000305866 CFTRP13569 1480 aa8.56□□□□□ -1.04
VPS50-202ENST00000305866 PELP1Q8IZL8 1130 aaKnown RBP8.56□□□□□ -1.04
VPS50-202ENST00000305866 CUX2O14529 1486 aa8.55□□□□□ -1.04
VPS50-202ENST00000305866 PRXQ9BXM0 1461 aa8.55□□□□□ -1.04
VPS50-202ENST00000305866 CUX1P39880 1505 aa8.5□□□□□ -1.05
VPS50-202ENST00000305866 MAP3K1Q13233 1512 aa8.49□□□□□ -1.05
VPS50-202ENST00000305866 ARAP1Q96P48 1450 aa8.48□□□□□ -1.05
VPS50-202ENST00000305866 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.48□□□□□ -1.05
VPS50-202ENST00000305866 CLIP1P30622 1438 aa8.47□□□□□ -1.05
VPS50-202ENST00000305866 WDR97A6NE52 1622 aa8.46□□□□□ -1.06
VPS50-202ENST00000305866 CSRNP3Q8WYN3 585 aa8.46□□□□□ -1.06
VPS50-202ENST00000305866 RAPGEF2Q9Y4G8 1499 aa8.46□□□□□ -1.06
VPS50-202ENST00000305866 VPS8Q8N3P4 1428 aa8.45□□□□□ -1.06
VPS50-202ENST00000305866 FAM9AQ8IZU1 332 aaPredicted RBP8.45□□□□□ -1.06
VPS50-202ENST00000305866 LRRIQ1Q96JM4 1722 aa8.43□□□□□ -1.06
VPS50-202ENST00000305866 MAPKBP1O60336 1514 aa8.42□□□□□ -1.06
VPS50-202ENST00000305866 CFAP43Q8NDM7 1665 aa8.41□□□□□ -1.06
VPS50-202ENST00000305866 RRBP1Q9P2E9 1410 aaKnown RBP8.41□□□□□ -1.06
VPS50-202ENST00000305866 CC2D2AQ9P2K1 1620 aa8.39□□□□□ -1.07
VPS50-202ENST00000305866 DIEXFQ68CQ4 756 aaKnown RBP8.39□□□□□ -1.07
VPS50-202ENST00000305866 GTF3C3Q9Y5Q9 886 aa8.37□□□□□ -1.07
VPS50-202ENST00000305866 DHX57Q6P158 1386 aaKnown RBP8.37□□□□□ -1.07
VPS50-202ENST00000305866 DNMBPQ6XZF7 1577 aa8.36□□□□□ -1.07
VPS50-202ENST00000305866 CUL7Q14999 1698 aa8.36□□□□□ -1.07
VPS50-202ENST00000305866 KDM5BQ9UGL1 1544 aa8.35□□□□□ -1.07
VPS50-202ENST00000305866 ABCA10Q8WWZ4 1543 aa8.34□□□□□ -1.07
VPS50-202ENST00000305866 ZNF316A6NFI3 1004 aaPredicted RBP8.34□□□□□ -1.08
VPS50-202ENST00000305866 KIF27Q86VH2 1401 aa8.33□□□□□ -1.08
VPS50-202ENST00000305866 PABPN1Q86U42 306 aaKnown RBP eCLIP8.33□□□□□ -1.08
VPS50-202ENST00000305866 LAMC3Q9Y6N6 1575 aa8.33□□□□□ -1.08
VPS50-202ENST00000305866 AQRO60306 1485 aaKnown RBP eCLIP8.33□□□□□ -1.08
VPS50-202ENST00000305866 CADPSQ9ULU8 1353 aa8.33□□□□□ -1.08
VPS50-202ENST00000305866 KIF21AQ7Z4S6 1674 aa8.33□□□□□ -1.08
VPS50-202ENST00000305866 ABCA5Q8WWZ7 1642 aa8.32□□□□□ -1.08
VPS50-202ENST00000305866 ARHGAP35Q9NRY4 1499 aa8.32□□□□□ -1.08
VPS50-202ENST00000305866 CLSPNQ9HAW4 1339 aa8.31□□□□□ -1.08
VPS50-202ENST00000305866 CTTNBP2Q8WZ74 1663 aa8.31□□□□□ -1.08
VPS50-202ENST00000305866 EFCAB5A4FU69 1503 aa8.31□□□□□ -1.08
VPS50-202ENST00000305866 MIER1Q8N108 512 aa8.31□□□□□ -1.08
VPS50-202ENST00000305866 TIAM1Q13009 1591 aa8.3□□□□□ -1.08
VPS50-202ENST00000305866 SAMD9Q5K651 1589 aa8.29□□□□□ -1.08
VPS50-202ENST00000305866 CCER1Q8TC90 406 aaPredicted RBP8.29□□□□□ -1.08
VPS50-202ENST00000305866 THOC2Q8NI27 1593 aaKnown RBP8.29□□□□□ -1.08
VPS50-202ENST00000305866 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.28□□□□□ -1.08
VPS50-202ENST00000305866 IGF1RP08069 1367 aa8.27□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms