RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.96■■□□□ 1.432e-6■■■■■ 205.4
TPM4-201ENST00000300933 SF3B1O75533 1304 aaKnown RBP eCLIP22.35■■□□□ 1.176e-7■■■■■ 83
TPM4-201ENST00000300933 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP23.2■■□□□ 1.31e-6■■■■■ 56.2
TPM4-201ENST00000300933 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.17■■□□□ 1.37e-12■■■■■ 49
TPM4-201ENST00000300933 SUB1P53999 127 aaKnown RBP eCLIP17.47■□□□□ 0.395e-9■■■■■ 42.5
TPM4-201ENST00000300933 SF3A3Q12874 501 aaKnown RBP eCLIP23.32■■□□□ 1.321e-6■■■■■ 41.8
TPM4-201ENST00000300933 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.88■□□□□ 0.932e-6■■■■■ 40.6
TPM4-201ENST00000300933 NONOQ15233 471 aaKnown RBP eCLIP24.72■■□□□ 1.552e-8■■■■■ 32.1
TPM4-201ENST00000300933 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.12■■□□□ 1.133e-6■■■■■ 31.9
TPM4-201ENST00000300933 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.21■■□□□ 1.632e-6■■■■■ 29.8
TPM4-201ENST00000300933 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.71■■□□□ 1.231e-7■■■■■ 26.8
TPM4-201ENST00000300933 DDX3XO00571 662 aaKnown RBP eCLIP23.8■■□□□ 1.43e-12■■■■□ 25.2
TPM4-201ENST00000300933 SF3B4Q15427 424 aaKnown RBP eCLIP21.04■□□□□ 0.966e-8■■■■□ 24.4
TPM4-201ENST00000300933 TIA1P31483 386 aaKnown RBP eCLIP21.01■□□□□ 0.951e-15■■■■□ 23.7
TPM4-201ENST00000300933 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.81■■■□□ 2.688e-48■■■■□ 23.3
TPM4-201ENST00000300933 UPF1Q92900 1129 aaKnown RBP eCLIP23.53■■□□□ 1.362e-8■■■■□ 22.9
TPM4-201ENST00000300933 EFTUD2Q15029 972 aaKnown RBP eCLIP22.83■■□□□ 1.254e-7■■■■□ 22.8
TPM4-201ENST00000300933 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.09■■□□□ 1.298e-7■■■■□ 22.5
TPM4-201ENST00000300933 YBX3P16989 372 aaKnown RBP eCLIP23.56■■□□□ 1.367e-9■■■■□ 22.4
TPM4-201ENST00000300933 GTF2F1P35269 517 aaKnown RBP eCLIP25.52■■□□□ 1.681e-6■■■■□ 21.5
TPM4-201ENST00000300933 AQRO60306 1485 aaKnown RBP eCLIP32.64■■■□□ 2.827e-7■■■■□ 21.1
TPM4-201ENST00000300933 RBM5P52756 815 aaKnown RBP eCLIP24.83■■□□□ 1.578e-6■■■■□ 20.7
TPM4-201ENST00000300933 ZNF800Q2TB10 664 aaPredicted RBP eCLIP20.3■□□□□ 0.846e-7■■■□□ 19.1
TPM4-201ENST00000300933 DDX51Q8N8A6 666 aaKnown RBP eCLIP22.18■■□□□ 1.141e-6■■■□□ 19.1
TPM4-201ENST00000300933 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP25.84■■□□□ 1.735e-7■■■□□ 18.3
TPM4-201ENST00000300933 PABPC4Q13310 644 aaKnown RBP eCLIP24.33■■□□□ 1.492e-7■■■□□ 18.3
TPM4-201ENST00000300933 NKRFO15226 690 aaKnown RBP eCLIP24.54■■□□□ 1.523e-8■■■□□ 18
TPM4-201ENST00000300933 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP20.14■□□□□ 0.813e-9■■■□□ 17.9
TPM4-201ENST00000300933 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.29■□□□□ 0.361e-6■■■□□ 16.8
TPM4-201ENST00000300933 NIPBLQ6KC79 2804 aaeCLIP16.47■□□□□ 0.236e-6■■■□□ 16.7
TPM4-201ENST00000300933 EWSR1Q01844 656 aaKnown RBP eCLIP18.49■□□□□ 0.551e-6■■■□□ 16.2
TPM4-201ENST00000300933 EIF4G2P78344 907 aaKnown RBP eCLIP30.78■■■□□ 2.523e-9■■■□□ 15.5
TPM4-201ENST00000300933 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP21.98■■□□□ 1.112e-8■■■□□ 15
TPM4-201ENST00000300933 PCBP2Q15366 365 aaKnown RBP eCLIP21.46■■□□□ 1.033e-6■■■□□ 14.6
TPM4-201ENST00000300933 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP24.69■■□□□ 1.541e-6■■□□□ 14.5
TPM4-201ENST00000300933 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.71■■■□□ 2.511e-6■■□□□ 14.3
TPM4-201ENST00000300933 PUM1Q14671 1186 aaKnown RBP eCLIP20.73■□□□□ 0.912e-6■■□□□ 13.8
TPM4-201ENST00000300933 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.76■■□□□ 1.873e-8■■□□□ 13.5
TPM4-201ENST00000300933 PRPF4O43172 522 aaKnown RBP eCLIP22.57■■□□□ 1.22e-10■■□□□ 13.2
TPM4-201ENST00000300933 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.7■■■□□ 2.59e-7■■□□□ 13.1
TPM4-201ENST00000300933 TIAL1Q01085 375 aaKnown RBP eCLIP21.9■■□□□ 1.13e-7■■□□□ 12.8
TPM4-201ENST00000300933 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.94■□□□□ 0.943e-8■■□□□ 12.4
TPM4-201ENST00000300933 GPKOWQ92917 476 aaPredicted RBP eCLIP25.1■■□□□ 1.611e-6■■□□□ 12.4
TPM4-201ENST00000300933 DDX21Q9NR30 783 aaKnown RBP eCLIP26.84■■□□□ 1.894e-7■■□□□ 12.4
TPM4-201ENST00000300933 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.54■■□□□ 1.362e-12■■□□□ 12.2
TPM4-201ENST00000300933 ZNF622Q969S3 477 aaKnown RBP eCLIP24.98■■□□□ 1.594e-7■■□□□ 11.9
TPM4-201ENST00000300933 WDR43Q15061 677 aaKnown RBP eCLIP29.15■■■□□ 2.261e-6■□□□□ 11.1
TPM4-201ENST00000300933 G3BP1Q13283 466 aaKnown RBP eCLIP26.62■■□□□ 1.855e-7■□□□□ 11.1
TPM4-201ENST00000300933 DDX6P26196 483 aaKnown RBP eCLIP21.34■■□□□ 1.011e-6■□□□□ 10.8
TPM4-201ENST00000300933 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.75■■□□□ 1.393e-6■□□□□ 10.7
TPM4-201ENST00000300933 FXR2P51116 673 aaKnown RBP eCLIP24.48■■□□□ 1.512e-7■□□□□ 10.7
TPM4-201ENST00000300933 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP20.81■□□□□ 0.926e-14■□□□□ 10.6
TPM4-201ENST00000300933 LSM11P83369 360 aaKnown RBP eCLIP20.66■□□□□ 0.92e-6■□□□□ 9.8
TPM4-201ENST00000300933 U2AF2P26368 475 aaKnown RBP eCLIP25.43■■□□□ 1.663e-8■□□□□ 9.8
TPM4-201ENST00000300933 DDX42Q86XP3 938 aaKnown RBP eCLIP23.58■■□□□ 1.379e-6■□□□□ 9.6
TPM4-201ENST00000300933 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.13■■□□□ 1.136e-8■□□□□ 9.1
TPM4-201ENST00000300933 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.18■■□□□ 1.33e-7■□□□□ 8.7
TPM4-201ENST00000300933 SRSF1Q07955 248 aaKnown RBP eCLIP16.92■□□□□ 0.32e-6■□□□□ 8.5
TPM4-201ENST00000300933 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.62■■□□□ 1.051e-6■□□□□ 8.1
TPM4-201ENST00000300933 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.81■■□□□ 1.722e-11■□□□□ 8.1
Retrieved 60 of 60 RNA–protein pairs in 10.3 ms