RNA–Protein interactions for RNA: ENST00000299345.10

CDH8-201, Transcript of cadherin 8, humanhuman

TSL 5 BASIC

Gene CDH8, Length 3,728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH8-201ENST00000299345 NISCHQ9Y2I1 1504 aa28.07■■■□□ 2.08
CDH8-201ENST00000299345 SHROOM4Q9ULL8 1493 aa24.11■■□□□ 1.45
CDH8-201ENST00000299345 DCAF8L2P0C7V8 631 aa23.88■■□□□ 1.41
CDH8-201ENST00000299345 CCDC180Q9P1Z9 1646 aa23.8■■□□□ 1.4
CDH8-201ENST00000299345 SUPT5HO00267 1087 aaKnown RBP23.7■■□□□ 1.38
CDH8-201ENST00000299345 ZCCHC6Q5VYS8 1495 aaKnown RBP23.66■■□□□ 1.38
CDH8-201ENST00000299345 DCAF1Q9Y4B6 1507 aa22.95■■□□□ 1.27
CDH8-201ENST00000299345 CHIC1Q5VXU3 224 aa22.78■■□□□ 1.24
CDH8-201ENST00000299345 ABCC9O60706 1549 aa22.48■■□□□ 1.19
CDH8-201ENST00000299345 SCRIBQ14160 1630 aa22.44■■□□□ 1.18
CDH8-201ENST00000299345 MYO15BQ96JP2 1530 aa22.39■■□□□ 1.17
CDH8-201ENST00000299345 RSF1Q96T23 1441 aaPredicted RBP22.21■■□□□ 1.15
CDH8-201ENST00000299345 NACADO15069 1562 aa22.19■■□□□ 1.14
CDH8-201ENST00000299345 LOC105371045A0A1W2PR82 267 aa22.15■■□□□ 1.14
CDH8-201ENST00000299345 TRIM41Q8WV44 630 aa22.09■■□□□ 1.13
CDH8-201ENST00000299345 PCGF6Q9BYE7 350 aa22.08■■□□□ 1.12
CDH8-201ENST00000299345 FAM9AQ8IZU1 332 aaPredicted RBP21.95■■□□□ 1.1
CDH8-201ENST00000299345 CECR2Q9BXF3 1484 aa21.92■■□□□ 1.1
CDH8-201ENST00000299345 RB1CC1Q8TDY2 1594 aa21.9■■□□□ 1.1
CDH8-201ENST00000299345 HRCP23327 699 aa21.85■■□□□ 1.09
CDH8-201ENST00000299345 EHMT2Q96KQ7 1210 aa21.81■■□□□ 1.08
CDH8-201ENST00000299345 MROH2BQ7Z745 1585 aa21.8■■□□□ 1.08
CDH8-201ENST00000299345 TRIM26Q12899 539 aaPredicted RBP21.66■■□□□ 1.06
CDH8-201ENST00000299345 WIZO95785 1651 aa21.63■■□□□ 1.05
CDH8-201ENST00000299345 BAZ1AQ9NRL2 1556 aaPredicted RBP21.62■■□□□ 1.05
CDH8-201ENST00000299345 PABPN1Q86U42 306 aaKnown RBP eCLIP21.58■■□□□ 1.05
CDH8-201ENST00000299345 PPARGC1BQ86YN6 1023 aaKnown RBP21.4■■□□□ 1.02
CDH8-201ENST00000299345 SMARCA4P51532 1647 aa21.36■■□□□ 1.01
CDH8-201ENST00000299345 TOP2AP11388 1531 aaKnown RBP21.34■■□□□ 1.01
CDH8-201ENST00000299345 CCDC88BA6NC98 1476 aa21.3■■□□□ 1
CDH8-201ENST00000299345 ZEB1P37275 1124 aaPredicted RBP21.22■□□□□ 0.99
CDH8-201ENST00000299345 UNC13AQ9UPW8 1703 aa21.21■□□□□ 0.99
CDH8-201ENST00000299345 SMARCA2P51531 1590 aa21.17■□□□□ 0.98
CDH8-201ENST00000299345 ABCC8Q09428 1581 aa21.17■□□□□ 0.98
CDH8-201ENST00000299345 UBTFP17480 764 aaKnown RBP21.15■□□□□ 0.98
CDH8-201ENST00000299345 BICRAQ9NZM4 1560 aa21.1■□□□□ 0.97
CDH8-201ENST00000299345 CSRNP3Q8WYN3 585 aa21.08■□□□□ 0.97
CDH8-201ENST00000299345 EIF4G1Q04637 1599 aaKnown RBP21.07■□□□□ 0.96
CDH8-201ENST00000299345 TTBK1Q5TCY1 1321 aaPredicted RBP21.06■□□□□ 0.96
CDH8-201ENST00000299345 SOGA1O94964 1423 aa21.02■□□□□ 0.96
CDH8-201ENST00000299345 WRNQ14191 1432 aaPredicted RBP eCLIP20.98■□□□□ 0.95
CDH8-201ENST00000299345 BAZ1BQ9UIG0 1483 aaKnown RBP20.98■□□□□ 0.95
CDH8-201ENST00000299345 EEA1Q15075 1411 aa20.97■□□□□ 0.95
CDH8-201ENST00000299345 ATAD2BQ9ULI0 1458 aa20.95■□□□□ 0.94
CDH8-201ENST00000299345 CEP162Q5TB80 1403 aa20.91■□□□□ 0.94
CDH8-201ENST00000299345 CCER1Q8TC90 406 aaPredicted RBP20.91■□□□□ 0.94
CDH8-201ENST00000299345 TNIKQ9UKE5 1360 aa20.89■□□□□ 0.93
CDH8-201ENST00000299345 PEG3Q9GZU2 1588 aa20.86■□□□□ 0.93
CDH8-201ENST00000299345 RUSC2Q8N2Y8 1516 aa20.85■□□□□ 0.93
CDH8-201ENST00000299345 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.84■□□□□ 0.93
CDH8-201ENST00000299345 GOLGA3Q08378 1498 aa20.81■□□□□ 0.92
CDH8-201ENST00000299345 RANGAP1P46060 587 aaPredicted RBP20.8■□□□□ 0.92
CDH8-201ENST00000299345 APLP2Q06481 763 aa20.78■□□□□ 0.92
CDH8-201ENST00000299345 CEP164Q9UPV0 1460 aa20.71■□□□□ 0.91
CDH8-201ENST00000299345 SYNJ1O43426 1573 aa20.67■□□□□ 0.9
CDH8-201ENST00000299345 CLIP1P30622 1438 aa20.62■□□□□ 0.89
CDH8-201ENST00000299345 NCAPD3P42695 1498 aa20.56■□□□□ 0.88
CDH8-201ENST00000299345 HNRNPUL2Q1KMD3 747 aaKnown RBP20.54■□□□□ 0.88
CDH8-201ENST00000299345 RAPGEF2Q9Y4G8 1499 aa20.5■□□□□ 0.87
CDH8-201ENST00000299345 KIF21BO75037 1637 aa20.49■□□□□ 0.87
CDH8-201ENST00000299345 HMGXB3Q12766 1538 aa20.47■□□□□ 0.87
CDH8-201ENST00000299345 TOP2BQ02880 1626 aa20.44■□□□□ 0.86
CDH8-201ENST00000299345 VPS8Q8N3P4 1428 aa20.44■□□□□ 0.86
CDH8-201ENST00000299345 KIF27Q86VH2 1401 aa20.4■□□□□ 0.86
CDH8-201ENST00000299345 CFTRP13569 1480 aa20.34■□□□□ 0.85
CDH8-201ENST00000299345 DIEXFQ68CQ4 756 aaKnown RBP20.31■□□□□ 0.84
CDH8-201ENST00000299345 CUX1P39880 1505 aa20.3■□□□□ 0.84
CDH8-201ENST00000299345 BIVM-ERCC5R4GMW8 1640 aa20.29■□□□□ 0.84
CDH8-201ENST00000299345 CADPSQ9ULU8 1353 aa20.27■□□□□ 0.84
CDH8-201ENST00000299345 PRXQ9BXM0 1461 aa20.27■□□□□ 0.83
CDH8-201ENST00000299345 ERICH3Q5RHP9 1530 aa20.23■□□□□ 0.83
CDH8-201ENST00000299345 CUX2O14529 1486 aa20.21■□□□□ 0.83
CDH8-201ENST00000299345 ZNF316A6NFI3 1004 aaPredicted RBP20.18■□□□□ 0.82
CDH8-201ENST00000299345 ATP1B4Q9UN42 357 aaPredicted RBP20.15■□□□□ 0.82
CDH8-201ENST00000299345 KANK4Q5T7N3 995 aaPredicted RBP20.14■□□□□ 0.81
CDH8-201ENST00000299345 ITGAEP38570 1179 aa20.13■□□□□ 0.81
CDH8-201ENST00000299345 CARMIL1Q5VZK9 1371 aa20.11■□□□□ 0.81
CDH8-201ENST00000299345 ARAP1Q96P48 1450 aa20.1■□□□□ 0.81
CDH8-201ENST00000299345 IGF1RP08069 1367 aa20.1■□□□□ 0.81
CDH8-201ENST00000299345 CENPBP07199 599 aaPredicted RBP20.1■□□□□ 0.81
CDH8-201ENST00000299345 CC2D2AQ9P2K1 1620 aa20.06■□□□□ 0.8
CDH8-201ENST00000299345 FGD5Q6ZNL6 1462 aa20.06■□□□□ 0.8
CDH8-201ENST00000299345 P3H3Q8IVL6 736 aa20.05■□□□□ 0.8
CDH8-201ENST00000299345 FANCD2Q9BXW9 1451 aa20.04■□□□□ 0.8
CDH8-201ENST00000299345 ARHGAP35Q9NRY4 1499 aa20■□□□□ 0.79
CDH8-201ENST00000299345 SCAF1Q9H7N4 1312 aaKnown RBP19.97■□□□□ 0.79
CDH8-201ENST00000299345 ACIN1Q9UKV3 1341 aaKnown RBP19.96■□□□□ 0.79
CDH8-201ENST00000299345 CCNB3Q8WWL7 1395 aa19.95■□□□□ 0.78
CDH8-201ENST00000299345 YTHDC1Q96MU7 727 aaKnown RBP19.92■□□□□ 0.78
CDH8-201ENST00000299345 FAM50AQ14320 339 aaKnown RBP19.92■□□□□ 0.78
CDH8-201ENST00000299345 CLSPNQ9HAW4 1339 aa19.92■□□□□ 0.78
CDH8-201ENST00000299345 NEUROD1Q13562 356 aa19.9■□□□□ 0.78
CDH8-201ENST00000299345 PRDM2Q13029 1718 aa19.89■□□□□ 0.78
CDH8-201ENST00000299345 RAD54L2Q9Y4B4 1467 aa19.89■□□□□ 0.77
CDH8-201ENST00000299345 NESP48681 1621 aa19.88■□□□□ 0.77
CDH8-201ENST00000299345 FHAD1B1AJZ9 1412 aa19.87■□□□□ 0.77
CDH8-201ENST00000299345 RRBP1Q9P2E9 1410 aaKnown RBP19.86■□□□□ 0.77
CDH8-201ENST00000299345 DHX57Q6P158 1386 aaKnown RBP19.86■□□□□ 0.77
CDH8-201ENST00000299345 TOPBP1Q92547 1522 aa19.83■□□□□ 0.76
CDH8-201ENST00000299345 POLA1P09884 1462 aaPredicted RBP19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms