RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 DCAF8L2P0C7V8 631 aa30.53■■■□□ 2.48
SHANK1-201ENST00000293441 SUPT5HO00267 1087 aaKnown RBP28.63■■■□□ 2.17
SHANK1-201ENST00000293441 NISCHQ9Y2I1 1504 aa28.4■■■□□ 2.14
SHANK1-201ENST00000293441 SHROOM4Q9ULL8 1493 aa28.22■■■□□ 2.11
SHANK1-201ENST00000293441 EHMT2Q96KQ7 1210 aa28.05■■■□□ 2.08
SHANK1-201ENST00000293441 APLP2Q06481 763 aa27.35■■□□□ 1.97
SHANK1-201ENST00000293441 FAM9AQ8IZU1 332 aaPredicted RBP27.11■■□□□ 1.93
SHANK1-201ENST00000293441 TTBK1Q5TCY1 1321 aaPredicted RBP27.04■■□□□ 1.92
SHANK1-201ENST00000293441 PELP1Q8IZL8 1130 aaKnown RBP26.94■■□□□ 1.9
SHANK1-201ENST00000293441 RANGAP1P46060 587 aaPredicted RBP26.86■■□□□ 1.89
SHANK1-201ENST00000293441 ATP1B4Q9UN42 357 aaPredicted RBP26.67■■□□□ 1.86
SHANK1-201ENST00000293441 PCGF6Q9BYE7 350 aa26.53■■□□□ 1.84
SHANK1-201ENST00000293441 TRIM41Q8WV44 630 aa26.46■■□□□ 1.83
SHANK1-201ENST00000293441 UBTFP17480 764 aaKnown RBP26.3■■□□□ 1.8
SHANK1-201ENST00000293441 CCER1Q8TC90 406 aaPredicted RBP26.21■■□□□ 1.79
SHANK1-201ENST00000293441 ERICH6Q7L0X2 663 aa25.97■■□□□ 1.75
SHANK1-201ENST00000293441 ZEB1P37275 1124 aaPredicted RBP25.94■■□□□ 1.74
SHANK1-201ENST00000293441 CENPBP07199 599 aaPredicted RBP25.93■■□□□ 1.74
SHANK1-201ENST00000293441 PPARGC1BQ86YN6 1023 aaKnown RBP25.85■■□□□ 1.73
SHANK1-201ENST00000293441 MYT1LQ9UL68 1186 aa25.79■■□□□ 1.72
SHANK1-201ENST00000293441 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.71■■□□□ 1.71
SHANK1-201ENST00000293441 HNRNPUL2Q1KMD3 747 aaKnown RBP25.71■■□□□ 1.71
SHANK1-201ENST00000293441 YTHDC1Q96MU7 727 aaKnown RBP25.67■■□□□ 1.7
SHANK1-201ENST00000293441 NEFLP07196 543 aa25.62■■□□□ 1.69
SHANK1-201ENST00000293441 ITGAEP38570 1179 aa25.58■■□□□ 1.69
SHANK1-201ENST00000293441 POLR3GLQ9BT43 218 aa25.48■■□□□ 1.67
SHANK1-201ENST00000293441 CHIC1Q5VXU3 224 aa25.39■■□□□ 1.65
SHANK1-201ENST00000293441 TRIM26Q12899 539 aaPredicted RBP25.27■■□□□ 1.64
SHANK1-201ENST00000293441 CNGB1Q14028 1251 aaPredicted RBP25.24■■□□□ 1.63
SHANK1-201ENST00000293441 LOC105371045A0A1W2PR82 267 aa25.18■■□□□ 1.62
SHANK1-201ENST00000293441 SLC4A1APQ9BWU0 796 aaKnown RBP25.13■■□□□ 1.61
SHANK1-201ENST00000293441 PABPN1Q86U42 306 aaKnown RBP eCLIP25.07■■□□□ 1.6
SHANK1-201ENST00000293441 ABCC9O60706 1549 aa25.03■■□□□ 1.6
SHANK1-201ENST00000293441 DAXXQ9UER7 740 aaPredicted RBP24.98■■□□□ 1.59
SHANK1-201ENST00000293441 FAM50AQ14320 339 aaKnown RBP24.89■■□□□ 1.58
SHANK1-201ENST00000293441 HRCP23327 699 aa24.87■■□□□ 1.57
SHANK1-201ENST00000293441 TRIM52Q96A61 297 aa24.78■■□□□ 1.56
SHANK1-201ENST00000293441 FBLN2P98095 1184 aa24.73■■□□□ 1.55
SHANK1-201ENST00000293441 NEUROD1Q13562 356 aa24.62■■□□□ 1.53
SHANK1-201ENST00000293441 CLSPNQ9HAW4 1339 aa24.56■■□□□ 1.52
SHANK1-201ENST00000293441 MYT1Q01538 1121 aa24.54■■□□□ 1.52
SHANK1-201ENST00000293441 ZNF326Q5BKZ1 582 aaKnown RBP24.52■■□□□ 1.52
SHANK1-201ENST00000293441 DIEXFQ68CQ4 756 aaKnown RBP24.43■■□□□ 1.5
SHANK1-201ENST00000293441 ARID3CA6NKF2 412 aa24.41■■□□□ 1.5
SHANK1-201ENST00000293441 ZNF316A6NFI3 1004 aaPredicted RBP24.4■■□□□ 1.5
SHANK1-201ENST00000293441 BCANQ96GW7 911 aa24.37■■□□□ 1.49
SHANK1-201ENST00000293441 P3H3Q8IVL6 736 aa24.35■■□□□ 1.49
SHANK1-201ENST00000293441 SLC24A1O60721 1099 aa24.32■■□□□ 1.48
SHANK1-201ENST00000293441 ZNF777Q9ULD5 760 aaPredicted RBP24.2■■□□□ 1.46
SHANK1-201ENST00000293441 ANP32CO43423 234 aa24.19■■□□□ 1.46
SHANK1-201ENST00000293441 ZBTB47Q9UFB7 747 aaPredicted RBP24.17■■□□□ 1.46
SHANK1-201ENST00000293441 BCL11AQ9H165 835 aa24.17■■□□□ 1.46
SHANK1-201ENST00000293441 RTL5Q5HYW3 569 aaPredicted RBP24.16■■□□□ 1.46
SHANK1-201ENST00000293441 CANXP27824 592 aaKnown RBP24.06■■□□□ 1.44
SHANK1-201ENST00000293441 PLPPR3Q6T4P5 718 aa24.04■■□□□ 1.44
SHANK1-201ENST00000293441 NEFMP07197 916 aa24.04■■□□□ 1.44
SHANK1-201ENST00000293441 ESF1Q9H501 851 aaKnown RBP24.02■■□□□ 1.44
SHANK1-201ENST00000293441 CSRNP3Q8WYN3 585 aa23.98■■□□□ 1.43
SHANK1-201ENST00000293441 SCRIBQ14160 1630 aa23.97■■□□□ 1.43
SHANK1-201ENST00000293441 CDK11AQ9UQ88 783 aaPredicted RBP23.95■■□□□ 1.42
SHANK1-201ENST00000293441 CHGAP10645 457 aaKnown RBP23.92■■□□□ 1.42
SHANK1-201ENST00000293441 STAG3Q9UJ98 1225 aa23.91■■□□□ 1.42
SHANK1-201ENST00000293441 NPM1P06748 294 aaKnown RBP eCLIP23.84■■□□□ 1.41
SHANK1-201ENST00000293441 GTF3C3Q9Y5Q9 886 aa23.78■■□□□ 1.4
SHANK1-201ENST00000293441 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.68■■□□□ 1.38
SHANK1-201ENST00000293441 TONSLQ96HA7 1378 aa23.64■■□□□ 1.37
SHANK1-201ENST00000293441 CHIC2Q9UKJ5 165 aa23.62■■□□□ 1.37
SHANK1-201ENST00000293441 NPM2Q86SE8 214 aaKnown RBP23.53■■□□□ 1.36
SHANK1-201ENST00000293441 CHMP7Q8WUX9 453 aaPredicted RBP23.51■■□□□ 1.35
SHANK1-201ENST00000293441 SALL2Q9Y467 1007 aaPredicted RBP23.5■■□□□ 1.35
SHANK1-201ENST00000293441 SCAF1Q9H7N4 1312 aaKnown RBP23.49■■□□□ 1.35
SHANK1-201ENST00000293441 FAM9BQ8IZU0 186 aa23.46■■□□□ 1.35
SHANK1-201ENST00000293441 ANP32AP39687 249 aaKnown RBP23.46■■□□□ 1.35
SHANK1-201ENST00000293441 KDM2AQ9Y2K7 1162 aa23.45■■□□□ 1.34
SHANK1-201ENST00000293441 SENP3Q9H4L4 574 aaPredicted RBP23.43■■□□□ 1.34
SHANK1-201ENST00000293441 TSPY4P0CV99 314 aa23.43■■□□□ 1.34
SHANK1-201ENST00000293441 TSPY10P0CW01 314 aa23.43■■□□□ 1.34
SHANK1-201ENST00000293441 DDX10Q13206 875 aaKnown RBP23.41■■□□□ 1.34
SHANK1-201ENST00000293441 ZCCHC6Q5VYS8 1495 aaKnown RBP23.39■■□□□ 1.34
SHANK1-201ENST00000293441 HNRNPUQ00839 825 aaKnown RBP eCLIP23.39■■□□□ 1.33
SHANK1-201ENST00000293441 MTUS2Q5JR59 1369 aa23.37■■□□□ 1.33
SHANK1-201ENST00000293441 A0A0G2JS52 829 aa23.35■■□□□ 1.33
SHANK1-201ENST00000293441 HSP90AA1P07900 732 aaKnown RBP23.35■■□□□ 1.33
SHANK1-201ENST00000293441 PLEKHG5O94827 1062 aa23.35■■□□□ 1.33
SHANK1-201ENST00000293441 FKBP8Q14318 412 aa23.33■■□□□ 1.32
SHANK1-201ENST00000293441 KCNH8Q96L42 1107 aa23.33■■□□□ 1.32
SHANK1-201ENST00000293441 TMC1Q8TDI8 760 aa23.32■■□□□ 1.32
SHANK1-201ENST00000293441 ZBTB7CA1YPR0 619 aa23.31■■□□□ 1.32
SHANK1-201ENST00000293441 WDR43Q15061 677 aaKnown RBP eCLIP23.3■■□□□ 1.32
SHANK1-201ENST00000293441 ACIN1Q9UKV3 1341 aaKnown RBP23.3■■□□□ 1.32
SHANK1-201ENST00000293441 UPF2Q9HAU5 1272 aaKnown RBP23.25■■□□□ 1.31
SHANK1-201ENST00000293441 C14orf37Q86TY3 774 aa23.24■■□□□ 1.31
SHANK1-201ENST00000293441 PPP1R15AO75807 674 aaPredicted RBP23.22■■□□□ 1.31
SHANK1-201ENST00000293441 CCDC180Q9P1Z9 1646 aa23.21■■□□□ 1.31
SHANK1-201ENST00000293441 RRP7BPQ9NSQ0 103 aa23.21■■□□□ 1.31
SHANK1-201ENST00000293441 RB1CC1Q8TDY2 1594 aa23.2■■□□□ 1.31
SHANK1-201ENST00000293441 HIRIP3Q9BW71 556 aaPredicted RBP23.16■■□□□ 1.3
SHANK1-201ENST00000293441 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.16■■□□□ 1.3
SHANK1-201ENST00000293441 ANP32BQ92688 251 aaKnown RBP23.14■■□□□ 1.3
SHANK1-201ENST00000293441 ARID4BQ4LE39 1312 aaPredicted RBP23.14■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms