RNA–Protein interactions for RNA: ENST00000293406.7

LSM12-201, Transcript of LSM12 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM12, Length 2,308 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM12-201ENST00000293406 NISCHQ9Y2I1 1504 aa38.97■■■■□ 3.83
LSM12-201ENST00000293406 SHROOM4Q9ULL8 1493 aa33.43■■■□□ 2.94
LSM12-201ENST00000293406 ZCCHC6Q5VYS8 1495 aaKnown RBP33.03■■■□□ 2.88
LSM12-201ENST00000293406 CCDC180Q9P1Z9 1646 aa32.98■■■□□ 2.87
LSM12-201ENST00000293406 SUPT5HO00267 1087 aaKnown RBP32.95■■■□□ 2.86
LSM12-201ENST00000293406 DCAF8L2P0C7V8 631 aa32.22■■■□□ 2.75
LSM12-201ENST00000293406 CHIC1Q5VXU3 224 aa32.18■■■□□ 2.74
LSM12-201ENST00000293406 MYO15BQ96JP2 1530 aa32.12■■■□□ 2.73
LSM12-201ENST00000293406 DCAF1Q9Y4B6 1507 aa31.98■■■□□ 2.71
LSM12-201ENST00000293406 HRCP23327 699 aa31.74■■■□□ 2.67
LSM12-201ENST00000293406 PCGF6Q9BYE7 350 aa31.5■■■□□ 2.63
LSM12-201ENST00000293406 LOC105371045A0A1W2PR82 267 aa31.23■■■□□ 2.59
LSM12-201ENST00000293406 ABCC9O60706 1549 aa31.22■■■□□ 2.59
LSM12-201ENST00000293406 PPARGC1BQ86YN6 1023 aaKnown RBP30.98■■■□□ 2.55
LSM12-201ENST00000293406 SCRIBQ14160 1630 aa30.97■■■□□ 2.55
LSM12-201ENST00000293406 RSF1Q96T23 1441 aaPredicted RBP30.96■■■□□ 2.55
LSM12-201ENST00000293406 TRIM26Q12899 539 aaPredicted RBP30.87■■■□□ 2.53
LSM12-201ENST00000293406 TRIM41Q8WV44 630 aa30.69■■■□□ 2.5
LSM12-201ENST00000293406 RB1CC1Q8TDY2 1594 aa30.68■■■□□ 2.5
LSM12-201ENST00000293406 NACADO15069 1562 aa30.44■■■□□ 2.46
LSM12-201ENST00000293406 FAM9AQ8IZU1 332 aaPredicted RBP30.42■■■□□ 2.46
LSM12-201ENST00000293406 ZEB1P37275 1124 aaPredicted RBP30.36■■■□□ 2.45
LSM12-201ENST00000293406 CECR2Q9BXF3 1484 aa30.36■■■□□ 2.45
LSM12-201ENST00000293406 MROH2BQ7Z745 1585 aa30.3■■■□□ 2.44
LSM12-201ENST00000293406 WIZO95785 1651 aa30.15■■■□□ 2.42
LSM12-201ENST00000293406 EHMT2Q96KQ7 1210 aa30.14■■■□□ 2.42
LSM12-201ENST00000293406 BAZ1AQ9NRL2 1556 aaPredicted RBP30.01■■■□□ 2.39
LSM12-201ENST00000293406 EIF4G1Q04637 1599 aaKnown RBP29.88■■■□□ 2.37
LSM12-201ENST00000293406 TOP2AP11388 1531 aaKnown RBP29.7■■■□□ 2.35
LSM12-201ENST00000293406 SMARCA4P51532 1647 aa29.61■■■□□ 2.33
LSM12-201ENST00000293406 ABCC8Q09428 1581 aa29.59■■■□□ 2.33
LSM12-201ENST00000293406 CCDC88BA6NC98 1476 aa29.58■■■□□ 2.33
LSM12-201ENST00000293406 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.54■■■□□ 2.32
LSM12-201ENST00000293406 SMARCA2P51531 1590 aa29.54■■■□□ 2.32
LSM12-201ENST00000293406 CCER1Q8TC90 406 aaPredicted RBP29.52■■■□□ 2.32
LSM12-201ENST00000293406 WRNQ14191 1432 aaPredicted RBP eCLIP29.48■■■□□ 2.31
LSM12-201ENST00000293406 CEP162Q5TB80 1403 aa29.42■■■□□ 2.3
LSM12-201ENST00000293406 SCAF1Q9H7N4 1312 aaKnown RBP29.41■■■□□ 2.3
LSM12-201ENST00000293406 UNC13AQ9UPW8 1703 aa29.4■■■□□ 2.3
LSM12-201ENST00000293406 SOGA1O94964 1423 aa29.39■■■□□ 2.29
LSM12-201ENST00000293406 TNIKQ9UKE5 1360 aa29.36■■■□□ 2.29
LSM12-201ENST00000293406 EEA1Q15075 1411 aa29.33■■■□□ 2.29
LSM12-201ENST00000293406 CSRNP3Q8WYN3 585 aa29.27■■■□□ 2.28
LSM12-201ENST00000293406 TTBK1Q5TCY1 1321 aaPredicted RBP29.27■■■□□ 2.28
LSM12-201ENST00000293406 PELP1Q8IZL8 1130 aaKnown RBP29.23■■■□□ 2.27
LSM12-201ENST00000293406 RUSC2Q8N2Y8 1516 aa29.21■■■□□ 2.27
LSM12-201ENST00000293406 UBTFP17480 764 aaKnown RBP29.19■■■□□ 2.26
LSM12-201ENST00000293406 GOLGA3Q08378 1498 aa29.14■■■□□ 2.26
LSM12-201ENST00000293406 DIEXFQ68CQ4 756 aaKnown RBP29.1■■■□□ 2.25
LSM12-201ENST00000293406 ACIN1Q9UKV3 1341 aaKnown RBP29.07■■■□□ 2.24
LSM12-201ENST00000293406 PABPN1Q86U42 306 aaKnown RBP eCLIP29.03■■■□□ 2.24
LSM12-201ENST00000293406 PEG3Q9GZU2 1588 aa29.03■■■□□ 2.24
LSM12-201ENST00000293406 BICRAQ9NZM4 1560 aa29.03■■■□□ 2.24
LSM12-201ENST00000293406 NEUROD1Q13562 356 aa28.97■■■□□ 2.23
LSM12-201ENST00000293406 CEP164Q9UPV0 1460 aa28.94■■■□□ 2.22
LSM12-201ENST00000293406 SYNJ1O43426 1573 aa28.91■■■□□ 2.22
LSM12-201ENST00000293406 KIF21BO75037 1637 aa28.9■■■□□ 2.22
LSM12-201ENST00000293406 CENPBP07199 599 aaPredicted RBP28.89■■■□□ 2.22
LSM12-201ENST00000293406 ZNF316A6NFI3 1004 aaPredicted RBP28.81■■■□□ 2.2
LSM12-201ENST00000293406 CLIP1P30622 1438 aa28.81■■■□□ 2.2
LSM12-201ENST00000293406 ATAD2BQ9ULI0 1458 aa28.78■■■□□ 2.2
LSM12-201ENST00000293406 BAZ1BQ9UIG0 1483 aaKnown RBP28.74■■■□□ 2.19
LSM12-201ENST00000293406 VPS8Q8N3P4 1428 aa28.73■■■□□ 2.19
LSM12-201ENST00000293406 GTF3C3Q9Y5Q9 886 aa28.72■■■□□ 2.19
LSM12-201ENST00000293406 HNRNPUL2Q1KMD3 747 aaKnown RBP28.71■■■□□ 2.19
LSM12-201ENST00000293406 RAPGEF2Q9Y4G8 1499 aa28.66■■■□□ 2.18
LSM12-201ENST00000293406 APLP2Q06481 763 aa28.64■■■□□ 2.18
LSM12-201ENST00000293406 TOP2BQ02880 1626 aa28.54■■■□□ 2.16
LSM12-201ENST00000293406 RANGAP1P46060 587 aaPredicted RBP28.5■■■□□ 2.15
LSM12-201ENST00000293406 BIVM-ERCC5R4GMW8 1640 aa28.42■■■□□ 2.14
LSM12-201ENST00000293406 MIER1Q8N108 512 aa28.41■■■□□ 2.14
LSM12-201ENST00000293406 YTHDC1Q96MU7 727 aaKnown RBP28.41■■■□□ 2.14
LSM12-201ENST00000293406 ERICH3Q5RHP9 1530 aa28.39■■■□□ 2.13
LSM12-201ENST00000293406 PRXQ9BXM0 1461 aa28.35■■■□□ 2.13
LSM12-201ENST00000293406 ARAP1Q96P48 1450 aa28.29■■■□□ 2.12
LSM12-201ENST00000293406 CLSPNQ9HAW4 1339 aa28.28■■■□□ 2.12
LSM12-201ENST00000293406 DHX57Q6P158 1386 aaKnown RBP28.21■■■□□ 2.11
LSM12-201ENST00000293406 CUX1P39880 1505 aa28.19■■■□□ 2.1
LSM12-201ENST00000293406 HMGXB3Q12766 1538 aa28.19■■■□□ 2.1
LSM12-201ENST00000293406 KANK4Q5T7N3 995 aaPredicted RBP28.18■■■□□ 2.1
LSM12-201ENST00000293406 KIF27Q86VH2 1401 aa28.17■■■□□ 2.1
LSM12-201ENST00000293406 NCAPD3P42695 1498 aa28.17■■■□□ 2.1
LSM12-201ENST00000293406 RRBP1Q9P2E9 1410 aaKnown RBP28.11■■■□□ 2.09
LSM12-201ENST00000293406 CFTRP13569 1480 aa28.03■■■□□ 2.08
LSM12-201ENST00000293406 ARHGAP35Q9NRY4 1499 aa28.01■■■□□ 2.07
LSM12-201ENST00000293406 CUX2O14529 1486 aa27.99■■■□□ 2.07
LSM12-201ENST00000293406 CCNB3Q8WWL7 1395 aa27.98■■■□□ 2.07
LSM12-201ENST00000293406 ITGAEP38570 1179 aa27.84■■■□□ 2.05
LSM12-201ENST00000293406 MYT1Q01538 1121 aa27.83■■■□□ 2.05
LSM12-201ENST00000293406 IGF1RP08069 1367 aa27.82■■■□□ 2.04
LSM12-201ENST00000293406 PRDM2Q13029 1718 aa27.8■■■□□ 2.04
LSM12-201ENST00000293406 MAP3K1Q13233 1512 aa27.77■■■□□ 2.04
LSM12-201ENST00000293406 TIAM1Q13009 1591 aa27.76■■■□□ 2.04
LSM12-201ENST00000293406 RAB3GAP2Q9H2M9 1393 aa27.75■■■□□ 2.03
LSM12-201ENST00000293406 CARMIL1Q5VZK9 1371 aa27.71■■■□□ 2.03
LSM12-201ENST00000293406 MAPKBP1O60336 1514 aa27.68■■■□□ 2.02
LSM12-201ENST00000293406 LRRC9Q6ZRR7 1453 aa27.66■■■□□ 2.02
LSM12-201ENST00000293406 CADPSQ9ULU8 1353 aa27.66■■■□□ 2.02
LSM12-201ENST00000293406 FGD5Q6ZNL6 1462 aa27.65■■■□□ 2.02
LSM12-201ENST00000293406 SETD5Q9C0A6 1442 aa27.64■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms