RNA–Protein interactions for RNA: ENST00000287936.8

HMGCR-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA reductase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCR, Length 4,585 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCR-201ENST00000287936 NISCHQ9Y2I1 1504 aa19.96■□□□□ 0.79
HMGCR-201ENST00000287936 SHROOM4Q9ULL8 1493 aa17.33■□□□□ 0.36
HMGCR-201ENST00000287936 DCAF8L2P0C7V8 631 aa17.29■□□□□ 0.36
HMGCR-201ENST00000287936 SUPT5HO00267 1087 aaKnown RBP17.16■□□□□ 0.34
HMGCR-201ENST00000287936 CCDC180Q9P1Z9 1646 aa16.92■□□□□ 0.3
HMGCR-201ENST00000287936 ZCCHC6Q5VYS8 1495 aaKnown RBP16.81■□□□□ 0.28
HMGCR-201ENST00000287936 CHIC1Q5VXU3 224 aa16.39■□□□□ 0.21
HMGCR-201ENST00000287936 DCAF1Q9Y4B6 1507 aa16.33■□□□□ 0.2
HMGCR-201ENST00000287936 PCGF6Q9BYE7 350 aa16.1■□□□□ 0.17
HMGCR-201ENST00000287936 TRIM41Q8WV44 630 aa16.06■□□□□ 0.16
HMGCR-201ENST00000287936 SCRIBQ14160 1630 aa15.98■□□□□ 0.15
HMGCR-201ENST00000287936 ABCC9O60706 1549 aa15.97■□□□□ 0.15
HMGCR-201ENST00000287936 HRCP23327 699 aa15.96■□□□□ 0.15
HMGCR-201ENST00000287936 MYO15BQ96JP2 1530 aa15.92■□□□□ 0.14
HMGCR-201ENST00000287936 FAM9AQ8IZU1 332 aaPredicted RBP15.91■□□□□ 0.14
HMGCR-201ENST00000287936 LOC105371045A0A1W2PR82 267 aa15.9■□□□□ 0.14
HMGCR-201ENST00000287936 TRIM26Q12899 539 aaPredicted RBP15.83■□□□□ 0.12
HMGCR-201ENST00000287936 NACADO15069 1562 aa15.82■□□□□ 0.12
HMGCR-201ENST00000287936 EHMT2Q96KQ7 1210 aa15.8■□□□□ 0.12
HMGCR-201ENST00000287936 RSF1Q96T23 1441 aaPredicted RBP15.8■□□□□ 0.12
HMGCR-201ENST00000287936 ZEB1P37275 1124 aaPredicted RBP15.76■□□□□ 0.11
HMGCR-201ENST00000287936 RB1CC1Q8TDY2 1594 aa15.66■□□□□ 0.1
HMGCR-201ENST00000287936 CECR2Q9BXF3 1484 aa15.5■□□□□ 0.07
HMGCR-201ENST00000287936 PPARGC1BQ86YN6 1023 aaKnown RBP15.47■□□□□ 0.07
HMGCR-201ENST00000287936 BAZ1AQ9NRL2 1556 aaPredicted RBP15.46■□□□□ 0.07
HMGCR-201ENST00000287936 MROH2BQ7Z745 1585 aa15.44■□□□□ 0.06
HMGCR-201ENST00000287936 UBTFP17480 764 aaKnown RBP15.42■□□□□ 0.06
HMGCR-201ENST00000287936 APLP2Q06481 763 aa15.39■□□□□ 0.05
HMGCR-201ENST00000287936 CCER1Q8TC90 406 aaPredicted RBP15.37■□□□□ 0.05
HMGCR-201ENST00000287936 PABPN1Q86U42 306 aaKnown RBP eCLIP15.36■□□□□ 0.05
HMGCR-201ENST00000287936 TTBK1Q5TCY1 1321 aaPredicted RBP15.32■□□□□ 0.04
HMGCR-201ENST00000287936 WIZO95785 1651 aa15.31■□□□□ 0.04
HMGCR-201ENST00000287936 TOP2AP11388 1531 aaKnown RBP15.23■□□□□ 0.03
HMGCR-201ENST00000287936 CSRNP3Q8WYN3 585 aa15.23■□□□□ 0.03
HMGCR-201ENST00000287936 EEA1Q15075 1411 aa15.21■□□□□ 0.03
HMGCR-201ENST00000287936 SMARCA4P51532 1647 aa15.17■□□□□ 0.02
HMGCR-201ENST00000287936 CCDC88BA6NC98 1476 aa15.16■□□□□ 0.02
HMGCR-201ENST00000287936 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.12■□□□□ 0.01
HMGCR-201ENST00000287936 RANGAP1P46060 587 aaPredicted RBP15.1■□□□□ 0.01
HMGCR-201ENST00000287936 TNIKQ9UKE5 1360 aa15.07■□□□□ 0
HMGCR-201ENST00000287936 WRNQ14191 1432 aaPredicted RBP eCLIP15.07■□□□□ 0
HMGCR-201ENST00000287936 CEP162Q5TB80 1403 aa15.06■□□□□ 0
HMGCR-201ENST00000287936 ABCC8Q09428 1581 aa15.05■□□□□ -0
HMGCR-201ENST00000287936 GOLGA3Q08378 1498 aa15.05■□□□□ -0
HMGCR-201ENST00000287936 CENPBP07199 599 aaPredicted RBP15.04■□□□□ -0
HMGCR-201ENST00000287936 BAZ1BQ9UIG0 1483 aaKnown RBP15.03■□□□□ -0
HMGCR-201ENST00000287936 SMARCA2P51531 1590 aa15.03■□□□□ -0
HMGCR-201ENST00000287936 SOGA1O94964 1423 aa14.98□□□□□ -0.01
HMGCR-201ENST00000287936 CEP164Q9UPV0 1460 aa14.96□□□□□ -0.01
HMGCR-201ENST00000287936 HNRNPUL2Q1KMD3 747 aaKnown RBP14.95□□□□□ -0.02
HMGCR-201ENST00000287936 CLIP1P30622 1438 aa14.9□□□□□ -0.02
HMGCR-201ENST00000287936 DIEXFQ68CQ4 756 aaKnown RBP14.9□□□□□ -0.02
HMGCR-201ENST00000287936 ATAD2BQ9ULI0 1458 aa14.87□□□□□ -0.03
HMGCR-201ENST00000287936 PELP1Q8IZL8 1130 aaKnown RBP14.87□□□□□ -0.03
HMGCR-201ENST00000287936 EIF4G1Q04637 1599 aaKnown RBP14.82□□□□□ -0.04
HMGCR-201ENST00000287936 UNC13AQ9UPW8 1703 aa14.81□□□□□ -0.04
HMGCR-201ENST00000287936 ZNF316A6NFI3 1004 aaPredicted RBP14.78□□□□□ -0.04
HMGCR-201ENST00000287936 BICRAQ9NZM4 1560 aa14.77□□□□□ -0.04
HMGCR-201ENST00000287936 RUSC2Q8N2Y8 1516 aa14.76□□□□□ -0.05
HMGCR-201ENST00000287936 PEG3Q9GZU2 1588 aa14.74□□□□□ -0.05
HMGCR-201ENST00000287936 ATP1B4Q9UN42 357 aaPredicted RBP14.74□□□□□ -0.05
HMGCR-201ENST00000287936 VPS8Q8N3P4 1428 aa14.73□□□□□ -0.05
HMGCR-201ENST00000287936 KIF27Q86VH2 1401 aa14.72□□□□□ -0.05
HMGCR-201ENST00000287936 KIF21BO75037 1637 aa14.68□□□□□ -0.06
HMGCR-201ENST00000287936 YTHDC1Q96MU7 727 aaKnown RBP14.68□□□□□ -0.06
HMGCR-201ENST00000287936 ACIN1Q9UKV3 1341 aaKnown RBP14.67□□□□□ -0.06
HMGCR-201ENST00000287936 ITGAEP38570 1179 aa14.66□□□□□ -0.06
HMGCR-201ENST00000287936 SYNJ1O43426 1573 aa14.65□□□□□ -0.06
HMGCR-201ENST00000287936 RAPGEF2Q9Y4G8 1499 aa14.63□□□□□ -0.07
HMGCR-201ENST00000287936 NCAPD3P42695 1498 aa14.6□□□□□ -0.07
HMGCR-201ENST00000287936 HMGXB3Q12766 1538 aa14.56□□□□□ -0.08
HMGCR-201ENST00000287936 TOP2BQ02880 1626 aa14.55□□□□□ -0.08
HMGCR-201ENST00000287936 CLSPNQ9HAW4 1339 aa14.55□□□□□ -0.08
HMGCR-201ENST00000287936 SCAF1Q9H7N4 1312 aaKnown RBP14.54□□□□□ -0.08
HMGCR-201ENST00000287936 FAM50AQ14320 339 aaKnown RBP14.53□□□□□ -0.08
HMGCR-201ENST00000287936 GTF3C3Q9Y5Q9 886 aa14.53□□□□□ -0.08
HMGCR-201ENST00000287936 ERICH3Q5RHP9 1530 aa14.52□□□□□ -0.09
HMGCR-201ENST00000287936 CUX2O14529 1486 aa14.51□□□□□ -0.09
HMGCR-201ENST00000287936 NEUROD1Q13562 356 aa14.49□□□□□ -0.09
HMGCR-201ENST00000287936 CADPSQ9ULU8 1353 aa14.47□□□□□ -0.09
HMGCR-201ENST00000287936 CARMIL1Q5VZK9 1371 aa14.46□□□□□ -0.09
HMGCR-201ENST00000287936 CFTRP13569 1480 aa14.45□□□□□ -0.1
HMGCR-201ENST00000287936 P3H3Q8IVL6 736 aa14.45□□□□□ -0.1
HMGCR-201ENST00000287936 PRXQ9BXM0 1461 aa14.44□□□□□ -0.1
HMGCR-201ENST00000287936 CCNB3Q8WWL7 1395 aa14.43□□□□□ -0.1
HMGCR-201ENST00000287936 FHAD1B1AJZ9 1412 aa14.42□□□□□ -0.1
HMGCR-201ENST00000287936 BIVM-ERCC5R4GMW8 1640 aa14.42□□□□□ -0.1
HMGCR-201ENST00000287936 KANK4Q5T7N3 995 aaPredicted RBP14.4□□□□□ -0.1
HMGCR-201ENST00000287936 CUX1P39880 1505 aa14.39□□□□□ -0.11
HMGCR-201ENST00000287936 MIER1Q8N108 512 aa14.39□□□□□ -0.11
HMGCR-201ENST00000287936 ARAP1Q96P48 1450 aa14.34□□□□□ -0.11
HMGCR-201ENST00000287936 IGF1RP08069 1367 aa14.32□□□□□ -0.12
HMGCR-201ENST00000287936 FGD5Q6ZNL6 1462 aa14.31□□□□□ -0.12
HMGCR-201ENST00000287936 DHX57Q6P158 1386 aaKnown RBP14.3□□□□□ -0.12
HMGCR-201ENST00000287936 FANCD2Q9BXW9 1451 aa14.3□□□□□ -0.12
HMGCR-201ENST00000287936 NEFLP07196 543 aa14.29□□□□□ -0.12
HMGCR-201ENST00000287936 MTUS2Q5JR59 1369 aa14.29□□□□□ -0.12
HMGCR-201ENST00000287936 ARHGAP35Q9NRY4 1499 aa14.27□□□□□ -0.12
HMGCR-201ENST00000287936 RRBP1Q9P2E9 1410 aaKnown RBP14.27□□□□□ -0.13
HMGCR-201ENST00000287936 MYT1Q01538 1121 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms