RNA–Protein interactions for RNA: ENST00000286749.3

SLC28A1-201, Transcript of solute carrier family 28 member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SLC28A1, Length 2,636 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1-201ENST00000286749 NISCHQ9Y2I1 1504 aa26.94■■□□□ 1.9
SLC28A1-201ENST00000286749 SHROOM4Q9ULL8 1493 aa23.17■■□□□ 1.3
SLC28A1-201ENST00000286749 CCDC180Q9P1Z9 1646 aa22.84■■□□□ 1.25
SLC28A1-201ENST00000286749 ZCCHC6Q5VYS8 1495 aaKnown RBP22.83■■□□□ 1.25
SLC28A1-201ENST00000286749 SUPT5HO00267 1087 aaKnown RBP22.8■■□□□ 1.24
SLC28A1-201ENST00000286749 DCAF8L2P0C7V8 631 aa22.29■■□□□ 1.16
SLC28A1-201ENST00000286749 MYO15BQ96JP2 1530 aa22.28■■□□□ 1.16
SLC28A1-201ENST00000286749 CHIC1Q5VXU3 224 aa22.25■■□□□ 1.15
SLC28A1-201ENST00000286749 DCAF1Q9Y4B6 1507 aa22.07■■□□□ 1.12
SLC28A1-201ENST00000286749 HRCP23327 699 aa21.94■■□□□ 1.1
SLC28A1-201ENST00000286749 PCGF6Q9BYE7 350 aa21.8■■□□□ 1.08
SLC28A1-201ENST00000286749 LOC105371045A0A1W2PR82 267 aa21.62■■□□□ 1.05
SLC28A1-201ENST00000286749 ABCC9O60706 1549 aa21.62■■□□□ 1.05
SLC28A1-201ENST00000286749 PPARGC1BQ86YN6 1023 aaKnown RBP21.49■■□□□ 1.03
SLC28A1-201ENST00000286749 SCRIBQ14160 1630 aa21.47■■□□□ 1.03
SLC28A1-201ENST00000286749 RSF1Q96T23 1441 aaPredicted RBP21.39■■□□□ 1.02
SLC28A1-201ENST00000286749 TRIM26Q12899 539 aaPredicted RBP21.31■■□□□ 1
SLC28A1-201ENST00000286749 RB1CC1Q8TDY2 1594 aa21.27■■□□□ 1
SLC28A1-201ENST00000286749 TRIM41Q8WV44 630 aa21.2■□□□□ 0.98
SLC28A1-201ENST00000286749 FAM9AQ8IZU1 332 aaPredicted RBP21.08■□□□□ 0.96
SLC28A1-201ENST00000286749 NACADO15069 1562 aa21.02■□□□□ 0.96
SLC28A1-201ENST00000286749 CECR2Q9BXF3 1484 aa21.02■□□□□ 0.96
SLC28A1-201ENST00000286749 MROH2BQ7Z745 1585 aa20.98■□□□□ 0.95
SLC28A1-201ENST00000286749 ZEB1P37275 1124 aaPredicted RBP20.92■□□□□ 0.94
SLC28A1-201ENST00000286749 EHMT2Q96KQ7 1210 aa20.92■□□□□ 0.94
SLC28A1-201ENST00000286749 WIZO95785 1651 aa20.92■□□□□ 0.94
SLC28A1-201ENST00000286749 BAZ1AQ9NRL2 1556 aaPredicted RBP20.78■□□□□ 0.92
SLC28A1-201ENST00000286749 EIF4G1Q04637 1599 aaKnown RBP20.71■□□□□ 0.91
SLC28A1-201ENST00000286749 TOP2AP11388 1531 aaKnown RBP20.54■□□□□ 0.88
SLC28A1-201ENST00000286749 ABCC8Q09428 1581 aa20.52■□□□□ 0.88
SLC28A1-201ENST00000286749 SMARCA4P51532 1647 aa20.51■□□□□ 0.87
SLC28A1-201ENST00000286749 CCDC88BA6NC98 1476 aa20.46■□□□□ 0.87
SLC28A1-201ENST00000286749 SMARCA2P51531 1590 aa20.46■□□□□ 0.87
SLC28A1-201ENST00000286749 UNC13AQ9UPW8 1703 aa20.46■□□□□ 0.87
SLC28A1-201ENST00000286749 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.45■□□□□ 0.86
SLC28A1-201ENST00000286749 CCER1Q8TC90 406 aaPredicted RBP20.4■□□□□ 0.86
SLC28A1-201ENST00000286749 SCAF1Q9H7N4 1312 aaKnown RBP20.37■□□□□ 0.85
SLC28A1-201ENST00000286749 WRNQ14191 1432 aaPredicted RBP eCLIP20.36■□□□□ 0.85
SLC28A1-201ENST00000286749 CEP162Q5TB80 1403 aa20.35■□□□□ 0.85
SLC28A1-201ENST00000286749 SOGA1O94964 1423 aa20.34■□□□□ 0.85
SLC28A1-201ENST00000286749 TTBK1Q5TCY1 1321 aaPredicted RBP20.31■□□□□ 0.84
SLC28A1-201ENST00000286749 TNIKQ9UKE5 1360 aa20.27■□□□□ 0.84
SLC28A1-201ENST00000286749 RUSC2Q8N2Y8 1516 aa20.24■□□□□ 0.83
SLC28A1-201ENST00000286749 EEA1Q15075 1411 aa20.23■□□□□ 0.83
SLC28A1-201ENST00000286749 CSRNP3Q8WYN3 585 aa20.21■□□□□ 0.83
SLC28A1-201ENST00000286749 UBTFP17480 764 aaKnown RBP20.17■□□□□ 0.82
SLC28A1-201ENST00000286749 PELP1Q8IZL8 1130 aaKnown RBP20.15■□□□□ 0.82
SLC28A1-201ENST00000286749 GOLGA3Q08378 1498 aa20.14■□□□□ 0.81
SLC28A1-201ENST00000286749 DIEXFQ68CQ4 756 aaKnown RBP20.11■□□□□ 0.81
SLC28A1-201ENST00000286749 BICRAQ9NZM4 1560 aa20.11■□□□□ 0.81
SLC28A1-201ENST00000286749 ACIN1Q9UKV3 1341 aaKnown RBP20.09■□□□□ 0.81
SLC28A1-201ENST00000286749 PABPN1Q86U42 306 aaKnown RBP eCLIP20.09■□□□□ 0.81
SLC28A1-201ENST00000286749 PEG3Q9GZU2 1588 aa20.06■□□□□ 0.8
SLC28A1-201ENST00000286749 NEUROD1Q13562 356 aa20.06■□□□□ 0.8
SLC28A1-201ENST00000286749 SYNJ1O43426 1573 aa20.04■□□□□ 0.8
SLC28A1-201ENST00000286749 KIF21BO75037 1637 aa20■□□□□ 0.79
SLC28A1-201ENST00000286749 CEP164Q9UPV0 1460 aa19.99■□□□□ 0.79
SLC28A1-201ENST00000286749 CENPBP07199 599 aaPredicted RBP19.94■□□□□ 0.78
SLC28A1-201ENST00000286749 CLIP1P30622 1438 aa19.92■□□□□ 0.78
SLC28A1-201ENST00000286749 ZNF316A6NFI3 1004 aaPredicted RBP19.9■□□□□ 0.78
SLC28A1-201ENST00000286749 ATAD2BQ9ULI0 1458 aa19.89■□□□□ 0.77
SLC28A1-201ENST00000286749 GTF3C3Q9Y5Q9 886 aa19.88■□□□□ 0.77
SLC28A1-201ENST00000286749 HNRNPUL2Q1KMD3 747 aaKnown RBP19.87■□□□□ 0.77
SLC28A1-201ENST00000286749 BAZ1BQ9UIG0 1483 aaKnown RBP19.87■□□□□ 0.77
SLC28A1-201ENST00000286749 VPS8Q8N3P4 1428 aa19.85■□□□□ 0.77
SLC28A1-201ENST00000286749 RAPGEF2Q9Y4G8 1499 aa19.83■□□□□ 0.77
SLC28A1-201ENST00000286749 APLP2Q06481 763 aa19.76■□□□□ 0.75
SLC28A1-201ENST00000286749 RANGAP1P46060 587 aaPredicted RBP19.75■□□□□ 0.75
SLC28A1-201ENST00000286749 TOP2BQ02880 1626 aa19.75■□□□□ 0.75
SLC28A1-201ENST00000286749 BIVM-ERCC5R4GMW8 1640 aa19.7■□□□□ 0.74
SLC28A1-201ENST00000286749 YTHDC1Q96MU7 727 aaKnown RBP19.69■□□□□ 0.74
SLC28A1-201ENST00000286749 MIER1Q8N108 512 aa19.66■□□□□ 0.74
SLC28A1-201ENST00000286749 ERICH3Q5RHP9 1530 aa19.62■□□□□ 0.73
SLC28A1-201ENST00000286749 PRXQ9BXM0 1461 aa19.59■□□□□ 0.73
SLC28A1-201ENST00000286749 ARAP1Q96P48 1450 aa19.58■□□□□ 0.73
SLC28A1-201ENST00000286749 CUX1P39880 1505 aa19.52■□□□□ 0.71
SLC28A1-201ENST00000286749 DHX57Q6P158 1386 aaKnown RBP19.5■□□□□ 0.71
SLC28A1-201ENST00000286749 KANK4Q5T7N3 995 aaPredicted RBP19.5■□□□□ 0.71
SLC28A1-201ENST00000286749 HMGXB3Q12766 1538 aa19.48■□□□□ 0.71
SLC28A1-201ENST00000286749 CLSPNQ9HAW4 1339 aa19.48■□□□□ 0.71
SLC28A1-201ENST00000286749 KIF27Q86VH2 1401 aa19.45■□□□□ 0.7
SLC28A1-201ENST00000286749 NCAPD3P42695 1498 aa19.44■□□□□ 0.7
SLC28A1-201ENST00000286749 RRBP1Q9P2E9 1410 aaKnown RBP19.41■□□□□ 0.7
SLC28A1-201ENST00000286749 ARHGAP35Q9NRY4 1499 aa19.37■□□□□ 0.69
SLC28A1-201ENST00000286749 CFTRP13569 1480 aa19.36■□□□□ 0.69
SLC28A1-201ENST00000286749 DNAJC5BQ9UF47 199 aa19.35■□□□□ 0.69
SLC28A1-201ENST00000286749 CUX2O14529 1486 aa19.33■□□□□ 0.68
SLC28A1-201ENST00000286749 CCNB3Q8WWL7 1395 aa19.33■□□□□ 0.68
SLC28A1-201ENST00000286749 PRDM2Q13029 1718 aa19.31■□□□□ 0.68
SLC28A1-201ENST00000286749 ITGAEP38570 1179 aa19.27■□□□□ 0.68
SLC28A1-201ENST00000286749 CC2D2AQ9P2K1 1620 aa19.26■□□□□ 0.67
SLC28A1-201ENST00000286749 TIAM1Q13009 1591 aa19.22■□□□□ 0.67
SLC28A1-201ENST00000286749 IGF1RP08069 1367 aa19.2■□□□□ 0.66
SLC28A1-201ENST00000286749 RAB3GAP2Q9H2M9 1393 aa19.19■□□□□ 0.66
SLC28A1-201ENST00000286749 MAPKBP1O60336 1514 aa19.17■□□□□ 0.66
SLC28A1-201ENST00000286749 MAP3K1Q13233 1512 aa19.17■□□□□ 0.66
SLC28A1-201ENST00000286749 MYT1Q01538 1121 aa19.15■□□□□ 0.66
SLC28A1-201ENST00000286749 CARMIL1Q5VZK9 1371 aa19.14■□□□□ 0.65
SLC28A1-201ENST00000286749 FGD5Q6ZNL6 1462 aa19.13■□□□□ 0.65
SLC28A1-201ENST00000286749 LRRC9Q6ZRR7 1453 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms