RNA–Protein interactions for RNA: ENST00000279242.6

MRPL49-201, Transcript of mitochondrial ribosomal protein L49, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MRPL49, Length 2,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL49-201ENST00000279242 NISCHQ9Y2I1 1504 aa32.72■■■□□ 2.83
MRPL49-201ENST00000279242 CCDC180Q9P1Z9 1646 aa27.94■■■□□ 2.06
MRPL49-201ENST00000279242 ZCCHC6Q5VYS8 1495 aaKnown RBP27.74■■■□□ 2.03
MRPL49-201ENST00000279242 SHROOM4Q9ULL8 1493 aa27.55■■■□□ 2
MRPL49-201ENST00000279242 SUPT5HO00267 1087 aaKnown RBP27.17■■□□□ 1.94
MRPL49-201ENST00000279242 DCAF1Q9Y4B6 1507 aa27.09■■□□□ 1.93
MRPL49-201ENST00000279242 CHIC1Q5VXU3 224 aa26.71■■□□□ 1.87
MRPL49-201ENST00000279242 DCAF8L2P0C7V8 631 aa26.61■■□□□ 1.85
MRPL49-201ENST00000279242 MYO15BQ96JP2 1530 aa26.53■■□□□ 1.84
MRPL49-201ENST00000279242 HRCP23327 699 aa26.24■■□□□ 1.79
MRPL49-201ENST00000279242 ABCC9O60706 1549 aa26.21■■□□□ 1.79
MRPL49-201ENST00000279242 PCGF6Q9BYE7 350 aa25.91■■□□□ 1.74
MRPL49-201ENST00000279242 RSF1Q96T23 1441 aaPredicted RBP25.88■■□□□ 1.73
MRPL49-201ENST00000279242 SCRIBQ14160 1630 aa25.84■■□□□ 1.73
MRPL49-201ENST00000279242 RB1CC1Q8TDY2 1594 aa25.75■■□□□ 1.71
MRPL49-201ENST00000279242 NACADO15069 1562 aa25.73■■□□□ 1.71
MRPL49-201ENST00000279242 LOC105371045A0A1W2PR82 267 aa25.71■■□□□ 1.71
MRPL49-201ENST00000279242 TRIM26Q12899 539 aaPredicted RBP25.63■■□□□ 1.69
MRPL49-201ENST00000279242 TRIM41Q8WV44 630 aa25.49■■□□□ 1.67
MRPL49-201ENST00000279242 ZEB1P37275 1124 aaPredicted RBP25.34■■□□□ 1.65
MRPL49-201ENST00000279242 MROH2BQ7Z745 1585 aa25.31■■□□□ 1.64
MRPL49-201ENST00000279242 PPARGC1BQ86YN6 1023 aaKnown RBP25.31■■□□□ 1.64
MRPL49-201ENST00000279242 CECR2Q9BXF3 1484 aa25.3■■□□□ 1.64
MRPL49-201ENST00000279242 BAZ1AQ9NRL2 1556 aaPredicted RBP25.22■■□□□ 1.63
MRPL49-201ENST00000279242 WIZO95785 1651 aa25.18■■□□□ 1.62
MRPL49-201ENST00000279242 EIF4G1Q04637 1599 aaKnown RBP25.07■■□□□ 1.6
MRPL49-201ENST00000279242 FAM9AQ8IZU1 332 aaPredicted RBP25.02■■□□□ 1.6
MRPL49-201ENST00000279242 TOP2AP11388 1531 aaKnown RBP24.96■■□□□ 1.59
MRPL49-201ENST00000279242 SMARCA4P51532 1647 aa24.88■■□□□ 1.57
MRPL49-201ENST00000279242 SMARCA2P51531 1590 aa24.76■■□□□ 1.55
MRPL49-201ENST00000279242 UNC13AQ9UPW8 1703 aa24.73■■□□□ 1.55
MRPL49-201ENST00000279242 CCDC88BA6NC98 1476 aa24.73■■□□□ 1.55
MRPL49-201ENST00000279242 WRNQ14191 1432 aaPredicted RBP eCLIP24.71■■□□□ 1.55
MRPL49-201ENST00000279242 EEA1Q15075 1411 aa24.7■■□□□ 1.54
MRPL49-201ENST00000279242 ABCC8Q09428 1581 aa24.59■■□□□ 1.53
MRPL49-201ENST00000279242 EHMT2Q96KQ7 1210 aa24.57■■□□□ 1.52
MRPL49-201ENST00000279242 TNIKQ9UKE5 1360 aa24.56■■□□□ 1.52
MRPL49-201ENST00000279242 PEG3Q9GZU2 1588 aa24.55■■□□□ 1.52
MRPL49-201ENST00000279242 CEP162Q5TB80 1403 aa24.49■■□□□ 1.51
MRPL49-201ENST00000279242 CSRNP3Q8WYN3 585 aa24.41■■□□□ 1.5
MRPL49-201ENST00000279242 SOGA1O94964 1423 aa24.41■■□□□ 1.5
MRPL49-201ENST00000279242 BICRAQ9NZM4 1560 aa24.41■■□□□ 1.5
MRPL49-201ENST00000279242 CCER1Q8TC90 406 aaPredicted RBP24.39■■□□□ 1.49
MRPL49-201ENST00000279242 GOLGA3Q08378 1498 aa24.38■■□□□ 1.49
MRPL49-201ENST00000279242 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.3■■□□□ 1.48
MRPL49-201ENST00000279242 PELP1Q8IZL8 1130 aaKnown RBP24.28■■□□□ 1.48
MRPL49-201ENST00000279242 KIF21BO75037 1637 aa24.27■■□□□ 1.48
MRPL49-201ENST00000279242 CEP164Q9UPV0 1460 aa24.25■■□□□ 1.47
MRPL49-201ENST00000279242 RUSC2Q8N2Y8 1516 aa24.23■■□□□ 1.47
MRPL49-201ENST00000279242 UBTFP17480 764 aaKnown RBP24.2■■□□□ 1.47
MRPL49-201ENST00000279242 ATAD2BQ9ULI0 1458 aa24.16■■□□□ 1.46
MRPL49-201ENST00000279242 BAZ1BQ9UIG0 1483 aaKnown RBP24.15■■□□□ 1.46
MRPL49-201ENST00000279242 SYNJ1O43426 1573 aa24.14■■□□□ 1.46
MRPL49-201ENST00000279242 SCAF1Q9H7N4 1312 aaKnown RBP24.13■■□□□ 1.45
MRPL49-201ENST00000279242 PABPN1Q86U42 306 aaKnown RBP eCLIP24.09■■□□□ 1.45
MRPL49-201ENST00000279242 DIEXFQ68CQ4 756 aaKnown RBP24.05■■□□□ 1.44
MRPL49-201ENST00000279242 CLIP1P30622 1438 aa24.03■■□□□ 1.44
MRPL49-201ENST00000279242 VPS8Q8N3P4 1428 aa24.01■■□□□ 1.43
MRPL49-201ENST00000279242 ACIN1Q9UKV3 1341 aaKnown RBP24■■□□□ 1.43
MRPL49-201ENST00000279242 TOP2BQ02880 1626 aa23.98■■□□□ 1.43
MRPL49-201ENST00000279242 CENPBP07199 599 aaPredicted RBP23.96■■□□□ 1.43
MRPL49-201ENST00000279242 BIVM-ERCC5R4GMW8 1640 aa23.93■■□□□ 1.42
MRPL49-201ENST00000279242 ZNF316A6NFI3 1004 aaPredicted RBP23.89■■□□□ 1.42
MRPL49-201ENST00000279242 TTBK1Q5TCY1 1321 aaPredicted RBP23.89■■□□□ 1.41
MRPL49-201ENST00000279242 ERICH3Q5RHP9 1530 aa23.88■■□□□ 1.41
MRPL49-201ENST00000279242 RAPGEF2Q9Y4G8 1499 aa23.87■■□□□ 1.41
MRPL49-201ENST00000279242 APLP2Q06481 763 aa23.84■■□□□ 1.41
MRPL49-201ENST00000279242 HMGXB3Q12766 1538 aa23.82■■□□□ 1.4
MRPL49-201ENST00000279242 NEUROD1Q13562 356 aa23.81■■□□□ 1.4
MRPL49-201ENST00000279242 PRXQ9BXM0 1461 aa23.77■■□□□ 1.4
MRPL49-201ENST00000279242 NCAPD3P42695 1498 aa23.76■■□□□ 1.39
MRPL49-201ENST00000279242 CLSPNQ9HAW4 1339 aa23.74■■□□□ 1.39
MRPL49-201ENST00000279242 HNRNPUL2Q1KMD3 747 aaKnown RBP23.67■■□□□ 1.38
MRPL49-201ENST00000279242 KIF27Q86VH2 1401 aa23.62■■□□□ 1.37
MRPL49-201ENST00000279242 GTF3C3Q9Y5Q9 886 aa23.6■■□□□ 1.37
MRPL49-201ENST00000279242 ARAP1Q96P48 1450 aa23.6■■□□□ 1.37
MRPL49-201ENST00000279242 CUX1P39880 1505 aa23.58■■□□□ 1.37
MRPL49-201ENST00000279242 CFTRP13569 1480 aa23.58■■□□□ 1.36
MRPL49-201ENST00000279242 PRDM2Q13029 1718 aa23.53■■□□□ 1.36
MRPL49-201ENST00000279242 RRBP1Q9P2E9 1410 aaKnown RBP23.51■■□□□ 1.35
MRPL49-201ENST00000279242 CUX2O14529 1486 aa23.48■■□□□ 1.35
MRPL49-201ENST00000279242 DHX57Q6P158 1386 aaKnown RBP23.45■■□□□ 1.34
MRPL49-201ENST00000279242 MIER1Q8N108 512 aa23.41■■□□□ 1.34
MRPL49-201ENST00000279242 MAP3K1Q13233 1512 aa23.41■■□□□ 1.34
MRPL49-201ENST00000279242 ARHGAP35Q9NRY4 1499 aa23.38■■□□□ 1.33
MRPL49-201ENST00000279242 RANGAP1P46060 587 aaPredicted RBP23.37■■□□□ 1.33
MRPL49-201ENST00000279242 KANK4Q5T7N3 995 aaPredicted RBP23.34■■□□□ 1.33
MRPL49-201ENST00000279242 CCNB3Q8WWL7 1395 aa23.33■■□□□ 1.33
MRPL49-201ENST00000279242 IGF1RP08069 1367 aa23.27■■□□□ 1.32
MRPL49-201ENST00000279242 CADPSQ9ULU8 1353 aa23.24■■□□□ 1.31
MRPL49-201ENST00000279242 YTHDC1Q96MU7 727 aaKnown RBP23.23■■□□□ 1.31
MRPL49-201ENST00000279242 DNAJC5BQ9UF47 199 aa23.23■■□□□ 1.31
MRPL49-201ENST00000279242 TIAM1Q13009 1591 aa23.23■■□□□ 1.31
MRPL49-201ENST00000279242 MYT1Q01538 1121 aa23.2■■□□□ 1.3
MRPL49-201ENST00000279242 CARMIL1Q5VZK9 1371 aa23.17■■□□□ 1.3
MRPL49-201ENST00000279242 FHAD1B1AJZ9 1412 aa23.17■■□□□ 1.3
MRPL49-201ENST00000279242 FGD5Q6ZNL6 1462 aa23.14■■□□□ 1.29
MRPL49-201ENST00000279242 LRRC9Q6ZRR7 1453 aa23.12■■□□□ 1.29
MRPL49-201ENST00000279242 CFAP43Q8NDM7 1665 aa23.1■■□□□ 1.29
MRPL49-201ENST00000279242 RAB3GAP2Q9H2M9 1393 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms