RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 AEBP2Q6ZN18 517 aaPredicted RBP18.21■□□□□ 0.51
CD44-202ENST00000278385 CHIC1Q5VXU3 224 aa17.92■□□□□ 0.46
CD44-202ENST00000278385 SENP3Q9H4L4 574 aaPredicted RBP15.68■□□□□ 0.1
CD44-202ENST00000278385 PHF23Q9BUL5 403 aaPredicted RBP15.64■□□□□ 0.09
CD44-202ENST00000278385 PLPPR3Q6T4P5 718 aa14.67□□□□□ -0.06
CD44-202ENST00000278385 FOXD1Q16676 465 aa14.41□□□□□ -0.1
CD44-202ENST00000278385 ADRA2BP18089 450 aa13.87□□□□□ -0.19
CD44-202ENST00000278385 PPP6R1Q9UPN7 881 aa13.81□□□□□ -0.2
CD44-202ENST00000278385 PIAS4Q8N2W9 510 aaPredicted RBP13.71□□□□□ -0.21
CD44-202ENST00000278385 MSH5O43196 834 aa13.46□□□□□ -0.25
CD44-202ENST00000278385 SCAF1Q9H7N4 1312 aaKnown RBP12.93□□□□□ -0.34
CD44-202ENST00000278385 PPP4R3CPQ6ZMV5 832 aa12.86□□□□□ -0.35
CD44-202ENST00000278385 NCBP3Q53F19 620 aaKnown RBP12.7□□□□□ -0.38
CD44-202ENST00000278385 MAPK8IP2Q13387 824 aaPredicted RBP12.55□□□□□ -0.4
CD44-202ENST00000278385 CNKSR2Q8WXI2 1034 aa12.55□□□□□ -0.4
CD44-202ENST00000278385 KCNA4P22459 653 aa12.51□□□□□ -0.41
CD44-202ENST00000278385 DMRT2Q9Y5R5 561 aa12.44□□□□□ -0.42
CD44-202ENST00000278385 NPM3O75607 178 aaKnown RBP12.3□□□□□ -0.44
CD44-202ENST00000278385 RNF216Q9NWF9 866 aaPredicted RBP12.28□□□□□ -0.44
CD44-202ENST00000278385 HOXD11P31277 338 aaPredicted RBP12.16□□□□□ -0.46
CD44-202ENST00000278385 POTEDQ86YR6 584 aa12.1□□□□□ -0.47
CD44-202ENST00000278385 DCAF8L1A6NGE4 600 aa12.08□□□□□ -0.48
CD44-202ENST00000278385 SLC4A1APQ9BWU0 796 aaKnown RBP12.03□□□□□ -0.48
CD44-202ENST00000278385 DNAJC5BQ9UF47 199 aa11.91□□□□□ -0.5
CD44-202ENST00000278385 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.76□□□□□ -0.53
CD44-202ENST00000278385 EHMT2Q96KQ7 1210 aa11.68□□□□□ -0.54
CD44-202ENST00000278385 FOXD4L1Q9NU39 408 aa11.61□□□□□ -0.55
CD44-202ENST00000278385 SLC4A2P04920 1241 aa11.54□□□□□ -0.56
CD44-202ENST00000278385 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.5□□□□□ -0.57
CD44-202ENST00000278385 HNRNPUL2Q1KMD3 747 aaKnown RBP11.5□□□□□ -0.57
CD44-202ENST00000278385 MYCNP04198 464 aaPredicted RBP11.47□□□□□ -0.57
CD44-202ENST00000278385 APLP2Q06481 763 aa11.43□□□□□ -0.58
CD44-202ENST00000278385 CSRNP3Q8WYN3 585 aa11.43□□□□□ -0.58
CD44-202ENST00000278385 RNF39Q9H2S5 420 aa11.41□□□□□ -0.58
CD44-202ENST00000278385 ZBTB22O15209 634 aa11.4□□□□□ -0.58
CD44-202ENST00000278385 SAMD1Q6SPF0 538 aaPredicted RBP11.4□□□□□ -0.58
CD44-202ENST00000278385 U3KPZ7 1027 aaPredicted RBP11.39□□□□□ -0.59
CD44-202ENST00000278385 C1QBPQ07021 282 aaKnown RBP11.38□□□□□ -0.59
CD44-202ENST00000278385 CACNB1Q02641 598 aaPredicted RBP11.25□□□□□ -0.61
CD44-202ENST00000278385 ATXN8OSP0DMR3 200 aa11.23□□□□□ -0.61
CD44-202ENST00000278385 CAPN15O75808 1086 aa11.19□□□□□ -0.62
CD44-202ENST00000278385 ZNF219Q9P2Y4 722 aaPredicted RBP11.15□□□□□ -0.62
CD44-202ENST00000278385 TRHP20396 242 aaPredicted RBP11.12□□□□□ -0.63
CD44-202ENST00000278385 SPINK5Q9NQ38 1064 aaPredicted RBP11.07□□□□□ -0.64
CD44-202ENST00000278385 ATF5Q9Y2D1 282 aaPredicted RBP10.97□□□□□ -0.65
CD44-202ENST00000278385 ABCB7O75027 752 aa10.89□□□□□ -0.67
CD44-202ENST00000278385 POLA2Q14181 598 aa10.89□□□□□ -0.67
CD44-202ENST00000278385 DSG3P32926 999 aa10.86□□□□□ -0.67
CD44-202ENST00000278385 ZBTB12Q9Y330 459 aaPredicted RBP10.85□□□□□ -0.67
CD44-202ENST00000278385 FBLN2P98095 1184 aa10.81□□□□□ -0.68
CD44-202ENST00000278385 RBM42Q9BTD8 480 aaKnown RBP10.53□□□□□ -0.72
CD44-202ENST00000278385 MKRN4PQ13434 485 aaPredicted RBP10.51□□□□□ -0.73
CD44-202ENST00000278385 OSCARQ8IYS5 282 aa10.48□□□□□ -0.73
CD44-202ENST00000278385 SPDYE2BA6NHP3 402 aa10.46□□□□□ -0.73
CD44-202ENST00000278385 SPDYE6P0CI01 402 aa10.46□□□□□ -0.73
CD44-202ENST00000278385 SPDYE2Q495Y8 402 aa10.46□□□□□ -0.73
CD44-202ENST00000278385 SPDYE4A6NLX3 237 aa10.45□□□□□ -0.74
CD44-202ENST00000278385 FKBP8Q14318 412 aa10.45□□□□□ -0.74
CD44-202ENST00000278385 ZNF692Q9BU19 519 aaPredicted RBP10.45□□□□□ -0.74
CD44-202ENST00000278385 AKT1S1Q96B36 256 aa10.33□□□□□ -0.76
CD44-202ENST00000278385 SSUH2Q9Y2M2 353 aa10.28□□□□□ -0.76
CD44-202ENST00000278385 PABPN1Q86U42 306 aaKnown RBP eCLIP10.27□□□□□ -0.77
CD44-202ENST00000278385 STAG3Q9UJ98 1225 aa10.21□□□□□ -0.77
CD44-202ENST00000278385 FBXO3Q9UK99 471 aa10.21□□□□□ -0.77
CD44-202ENST00000278385 SPDYE1Q8NFV5 336 aaPredicted RBP10.2□□□□□ -0.78
CD44-202ENST00000278385 REM2Q8IYK8 340 aaPredicted RBP10.17□□□□□ -0.78
CD44-202ENST00000278385 CLEC11AQ9Y240 323 aa10.16□□□□□ -0.78
CD44-202ENST00000278385 PROM2Q8N271 834 aa10.12□□□□□ -0.79
CD44-202ENST00000278385 PLEKHG5O94827 1062 aa10.09□□□□□ -0.79
CD44-202ENST00000278385 PRR29P0C7W0 189 aa10.07□□□□□ -0.8
CD44-202ENST00000278385 SLC24A1O60721 1099 aa10.05□□□□□ -0.8
CD44-202ENST00000278385 PITPNM1O00562 1244 aa10.02□□□□□ -0.81
CD44-202ENST00000278385 PLCD3Q8N3E9 789 aa10□□□□□ -0.81
CD44-202ENST00000278385 CHRDL2Q6WN34 429 aa9.98□□□□□ -0.81
CD44-202ENST00000278385 MIER1Q8N108 512 aa9.98□□□□□ -0.81
CD44-202ENST00000278385 ZBTB47Q9UFB7 747 aaPredicted RBP9.94□□□□□ -0.82
CD44-202ENST00000278385 VASPP50552 380 aaPredicted RBP9.93□□□□□ -0.82
CD44-202ENST00000278385 KLHL34Q8N239 644 aa9.91□□□□□ -0.82
CD44-202ENST00000278385 NPM1P06748 294 aaKnown RBP eCLIP9.84□□□□□ -0.83
CD44-202ENST00000278385 PRKAR2AP13861 404 aaKnown RBP9.84□□□□□ -0.83
CD44-202ENST00000278385 FXR2P51116 673 aaKnown RBP eCLIP9.83□□□□□ -0.84
CD44-202ENST00000278385 PIP4P2Q8N4L2 257 aa9.81□□□□□ -0.84
CD44-202ENST00000278385 CREBZFQ9NS37 354 aa9.79□□□□□ -0.84
CD44-202ENST00000278385 CHADLQ6NUI6 762 aa9.78□□□□□ -0.84
CD44-202ENST00000278385 SPOCK2Q92563 424 aa9.74□□□□□ -0.85
CD44-202ENST00000278385 FARP1Q9Y4F1 1045 aaPredicted RBP9.74□□□□□ -0.85
CD44-202ENST00000278385 PAK3O75914 559 aaPredicted RBP9.72□□□□□ -0.85
CD44-202ENST00000278385 IFNLR1Q8IU57 520 aaPredicted RBP9.72□□□□□ -0.85
CD44-202ENST00000278385 POTEHQ6S545 545 aa9.65□□□□□ -0.86
CD44-202ENST00000278385 FAM212AQ96EL1 285 aa9.65□□□□□ -0.86
CD44-202ENST00000278385 GSE1Q14687 1217 aa9.63□□□□□ -0.87
CD44-202ENST00000278385 DCAF8Q5TAQ9 597 aa9.63□□□□□ -0.87
CD44-202ENST00000278385 CIZ1Q9ULV3 898 aaPredicted RBP9.63□□□□□ -0.87
CD44-202ENST00000278385 HAX1O00165 279 aa9.62□□□□□ -0.87
CD44-202ENST00000278385 MNX1P50219 401 aaPredicted RBP9.61□□□□□ -0.87
CD44-202ENST00000278385 AMER1Q5JTC6 1135 aaPredicted RBP9.61□□□□□ -0.87
CD44-202ENST00000278385 CD44P16070 742 aaKnown RBP9.58□□□□□ -0.88
CD44-202ENST00000278385 TSPYL2Q9H2G4 693 aaPredicted RBP9.58□□□□□ -0.88
CD44-202ENST00000278385 NUBP1P53384 320 aa9.56□□□□□ -0.88
CD44-202ENST00000278385 TRIM41Q8WV44 630 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms