RNA–Protein interactions for RNA: ENST00000263511.8

CROCCP3-201, Transcript of ciliary rootlet coiled-coil, rootletin pseudogene 3, humanhuman

TSL 1 (best) BASIC

Gene CROCCP3, Length 5,368 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CROCCP3-201ENST00000263511 DCAF8L2P0C7V8 631 aa29.51■■■□□ 2.31
CROCCP3-201ENST00000263511 NISCHQ9Y2I1 1504 aa27.79■■■□□ 2.04
CROCCP3-201ENST00000263511 SUPT5HO00267 1087 aaKnown RBP27.78■■■□□ 2.04
CROCCP3-201ENST00000263511 SHROOM4Q9ULL8 1493 aa27.24■■□□□ 1.95
CROCCP3-201ENST00000263511 EHMT2Q96KQ7 1210 aa26.88■■□□□ 1.89
CROCCP3-201ENST00000263511 APLP2Q06481 763 aa26.65■■□□□ 1.86
CROCCP3-201ENST00000263511 FAM9AQ8IZU1 332 aaPredicted RBP26.44■■□□□ 1.82
CROCCP3-201ENST00000263511 PELP1Q8IZL8 1130 aaKnown RBP26.35■■□□□ 1.81
CROCCP3-201ENST00000263511 TTBK1Q5TCY1 1321 aaPredicted RBP25.96■■□□□ 1.75
CROCCP3-201ENST00000263511 RANGAP1P46060 587 aaPredicted RBP25.83■■□□□ 1.73
CROCCP3-201ENST00000263511 TRIM41Q8WV44 630 aa25.79■■□□□ 1.72
CROCCP3-201ENST00000263511 ATP1B4Q9UN42 357 aaPredicted RBP25.72■■□□□ 1.71
CROCCP3-201ENST00000263511 PCGF6Q9BYE7 350 aa25.71■■□□□ 1.71
CROCCP3-201ENST00000263511 UBTFP17480 764 aaKnown RBP25.56■■□□□ 1.68
CROCCP3-201ENST00000263511 CCER1Q8TC90 406 aaPredicted RBP25.47■■□□□ 1.67
CROCCP3-201ENST00000263511 ZEB1P37275 1124 aaPredicted RBP25.46■■□□□ 1.67
CROCCP3-201ENST00000263511 CENPBP07199 599 aaPredicted RBP25.35■■□□□ 1.65
CROCCP3-201ENST00000263511 ERICH6Q7L0X2 663 aa25.17■■□□□ 1.62
CROCCP3-201ENST00000263511 NEFLP07196 543 aa24.97■■□□□ 1.59
CROCCP3-201ENST00000263511 MYT1Q01538 1121 aa24.93■■□□□ 1.58
CROCCP3-201ENST00000263511 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.89■■□□□ 1.57
CROCCP3-201ENST00000263511 HNRNPUL2Q1KMD3 747 aaKnown RBP24.89■■□□□ 1.57
CROCCP3-201ENST00000263511 MYT1LQ9UL68 1186 aa24.88■■□□□ 1.57
CROCCP3-201ENST00000263511 PPARGC1BQ86YN6 1023 aaKnown RBP24.87■■□□□ 1.57
CROCCP3-201ENST00000263511 YTHDC1Q96MU7 727 aaKnown RBP24.76■■□□□ 1.55
CROCCP3-201ENST00000263511 ITGAEP38570 1179 aa24.71■■□□□ 1.55
CROCCP3-201ENST00000263511 TRIM26Q12899 539 aaPredicted RBP24.7■■□□□ 1.54
CROCCP3-201ENST00000263511 POLR3GLQ9BT43 218 aa24.56■■□□□ 1.52
CROCCP3-201ENST00000263511 CHIC1Q5VXU3 224 aa24.41■■□□□ 1.5
CROCCP3-201ENST00000263511 LOC105371045A0A1W2PR82 267 aa24.41■■□□□ 1.5
CROCCP3-201ENST00000263511 HRCP23327 699 aa24.38■■□□□ 1.49
CROCCP3-201ENST00000263511 DAXXQ9UER7 740 aaPredicted RBP24.28■■□□□ 1.48
CROCCP3-201ENST00000263511 PABPN1Q86U42 306 aaKnown RBP eCLIP24.25■■□□□ 1.47
CROCCP3-201ENST00000263511 ABCC9O60706 1549 aa24.25■■□□□ 1.47
CROCCP3-201ENST00000263511 CNGB1Q14028 1251 aaPredicted RBP24.22■■□□□ 1.47
CROCCP3-201ENST00000263511 SLC4A1APQ9BWU0 796 aaKnown RBP24.21■■□□□ 1.47
CROCCP3-201ENST00000263511 FAM50AQ14320 339 aaKnown RBP24.12■■□□□ 1.45
CROCCP3-201ENST00000263511 TRIM52Q96A61 297 aa24.03■■□□□ 1.44
CROCCP3-201ENST00000263511 FBLN2P98095 1184 aa23.91■■□□□ 1.42
CROCCP3-201ENST00000263511 CLSPNQ9HAW4 1339 aa23.82■■□□□ 1.4
CROCCP3-201ENST00000263511 NEUROD1Q13562 356 aa23.81■■□□□ 1.4
CROCCP3-201ENST00000263511 DIEXFQ68CQ4 756 aaKnown RBP23.79■■□□□ 1.4
CROCCP3-201ENST00000263511 ZNF326Q5BKZ1 582 aaKnown RBP23.72■■□□□ 1.39
CROCCP3-201ENST00000263511 ZNF316A6NFI3 1004 aaPredicted RBP23.68■■□□□ 1.38
CROCCP3-201ENST00000263511 ANP32CO43423 234 aa23.57■■□□□ 1.36
CROCCP3-201ENST00000263511 RTL5Q5HYW3 569 aaPredicted RBP23.55■■□□□ 1.36
CROCCP3-201ENST00000263511 P3H3Q8IVL6 736 aa23.54■■□□□ 1.36
CROCCP3-201ENST00000263511 BCANQ96GW7 911 aa23.51■■□□□ 1.35
CROCCP3-201ENST00000263511 ZBTB47Q9UFB7 747 aaPredicted RBP23.51■■□□□ 1.35
CROCCP3-201ENST00000263511 ARID3CA6NKF2 412 aa23.51■■□□□ 1.35
CROCCP3-201ENST00000263511 CSRNP3Q8WYN3 585 aa23.51■■□□□ 1.35
CROCCP3-201ENST00000263511 CDK11AQ9UQ88 783 aaPredicted RBP23.47■■□□□ 1.35
CROCCP3-201ENST00000263511 NEFMP07197 916 aa23.43■■□□□ 1.34
CROCCP3-201ENST00000263511 ZNF777Q9ULD5 760 aaPredicted RBP23.43■■□□□ 1.34
CROCCP3-201ENST00000263511 SLC24A1O60721 1099 aa23.39■■□□□ 1.33
CROCCP3-201ENST00000263511 ESF1Q9H501 851 aaKnown RBP23.34■■□□□ 1.33
CROCCP3-201ENST00000263511 CANXP27824 592 aaKnown RBP23.34■■□□□ 1.33
CROCCP3-201ENST00000263511 GTF3C3Q9Y5Q9 886 aa23.3■■□□□ 1.32
CROCCP3-201ENST00000263511 SCRIBQ14160 1630 aa23.24■■□□□ 1.31
CROCCP3-201ENST00000263511 NPM1P06748 294 aaKnown RBP eCLIP23.23■■□□□ 1.31
CROCCP3-201ENST00000263511 STAG3Q9UJ98 1225 aa23.17■■□□□ 1.3
CROCCP3-201ENST00000263511 BCL11AQ9H165 835 aa23.17■■□□□ 1.3
CROCCP3-201ENST00000263511 CHGAP10645 457 aaKnown RBP23.14■■□□□ 1.29
CROCCP3-201ENST00000263511 TONSLQ96HA7 1378 aa23.06■■□□□ 1.28
CROCCP3-201ENST00000263511 ACIN1Q9UKV3 1341 aaKnown RBP23.02■■□□□ 1.28
CROCCP3-201ENST00000263511 PLPPR3Q6T4P5 718 aa22.99■■□□□ 1.27
CROCCP3-201ENST00000263511 ZCCHC6Q5VYS8 1495 aaKnown RBP22.92■■□□□ 1.26
CROCCP3-201ENST00000263511 TSPY4P0CV99 314 aa22.9■■□□□ 1.26
CROCCP3-201ENST00000263511 TSPY10P0CW01 314 aa22.9■■□□□ 1.26
CROCCP3-201ENST00000263511 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.9■■□□□ 1.265e-7■■□□□ 12.5
CROCCP3-201ENST00000263511 CHIC2Q9UKJ5 165 aa22.89■■□□□ 1.25
CROCCP3-201ENST00000263511 CHMP7Q8WUX9 453 aaPredicted RBP22.88■■□□□ 1.25
CROCCP3-201ENST00000263511 ANP32AP39687 249 aaKnown RBP22.86■■□□□ 1.25
CROCCP3-201ENST00000263511 MTUS2Q5JR59 1369 aa22.81■■□□□ 1.24
CROCCP3-201ENST00000263511 HNRNPUQ00839 825 aaKnown RBP eCLIP22.76■■□□□ 1.23
CROCCP3-201ENST00000263511 DDX10Q13206 875 aaKnown RBP22.75■■□□□ 1.23
CROCCP3-201ENST00000263511 FAM9BQ8IZU0 186 aa22.75■■□□□ 1.23
CROCCP3-201ENST00000263511 NPM2Q86SE8 214 aaKnown RBP22.73■■□□□ 1.23
CROCCP3-201ENST00000263511 TMC1Q8TDI8 760 aa22.71■■□□□ 1.23
CROCCP3-201ENST00000263511 KDM2AQ9Y2K7 1162 aa22.69■■□□□ 1.22
CROCCP3-201ENST00000263511 UPF2Q9HAU5 1272 aaKnown RBP22.69■■□□□ 1.22
CROCCP3-201ENST00000263511 HSP90AA1P07900 732 aaKnown RBP22.68■■□□□ 1.22
CROCCP3-201ENST00000263511 WDR43Q15061 677 aaKnown RBP eCLIP22.67■■□□□ 1.22
CROCCP3-201ENST00000263511 SALL2Q9Y467 1007 aaPredicted RBP22.66■■□□□ 1.22
CROCCP3-201ENST00000263511 FKBP8Q14318 412 aa22.65■■□□□ 1.22
CROCCP3-201ENST00000263511 DCAF1Q9Y4B6 1507 aa22.64■■□□□ 1.21
CROCCP3-201ENST00000263511 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.64■■□□□ 1.21
CROCCP3-201ENST00000263511 CLIP1P30622 1438 aa22.61■■□□□ 1.21
CROCCP3-201ENST00000263511 CCDC180Q9P1Z9 1646 aa22.6■■□□□ 1.21
CROCCP3-201ENST00000263511 RB1CC1Q8TDY2 1594 aa22.6■■□□□ 1.21
CROCCP3-201ENST00000263511 PLEKHD1A6NEE1 506 aa22.59■■□□□ 1.21
CROCCP3-201ENST00000263511 KCNH8Q96L42 1107 aa22.58■■□□□ 1.21
CROCCP3-201ENST00000263511 SCAF1Q9H7N4 1312 aaKnown RBP22.58■■□□□ 1.21
CROCCP3-201ENST00000263511 ANP32BQ92688 251 aaKnown RBP22.57■■□□□ 1.2
CROCCP3-201ENST00000263511 PPP1R15AO75807 674 aaPredicted RBP22.55■■□□□ 1.2
CROCCP3-201ENST00000263511 MRS2Q9HD23 443 aa22.55■■□□□ 1.2
CROCCP3-201ENST00000263511 RSF1Q96T23 1441 aaPredicted RBP22.54■■□□□ 1.2
CROCCP3-201ENST00000263511 RRP7BPQ9NSQ0 103 aa22.52■■□□□ 1.2
CROCCP3-201ENST00000263511 CCDC136Q96JN2 1154 aa22.49■■□□□ 1.19
CROCCP3-201ENST00000263511 EIF4G2P78344 907 aaKnown RBP eCLIP22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms