RNA–Protein interactions for RNA: ENST00000261726.10

CUX2-201, Transcript of cut like homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CUX2, Length 6,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-201ENST00000261726 DCAF8L2P0C7V8 631 aa24.53■■□□□ 1.52
CUX2-201ENST00000261726 NISCHQ9Y2I1 1504 aa23.91■■□□□ 1.42
CUX2-201ENST00000261726 SUPT5HO00267 1087 aaKnown RBP23.14■■□□□ 1.29
CUX2-201ENST00000261726 EHMT2Q96KQ7 1210 aa23.04■■□□□ 1.28
CUX2-201ENST00000261726 PELP1Q8IZL8 1130 aaKnown RBP22.96■■□□□ 1.27
CUX2-201ENST00000261726 SHROOM4Q9ULL8 1493 aa22.53■■□□□ 1.2
CUX2-201ENST00000261726 APLP2Q06481 763 aa22.41■■□□□ 1.18
CUX2-201ENST00000261726 TTBK1Q5TCY1 1321 aaPredicted RBP22.27■■□□□ 1.16
CUX2-201ENST00000261726 ERICH6Q7L0X2 663 aa22.26■■□□□ 1.15
CUX2-201ENST00000261726 FAM9AQ8IZU1 332 aaPredicted RBP22.03■■□□□ 1.12
CUX2-201ENST00000261726 CCER1Q8TC90 406 aaPredicted RBP21.95■■□□□ 1.1
CUX2-201ENST00000261726 PCGF6Q9BYE7 350 aa21.92■■□□□ 1.1
CUX2-201ENST00000261726 RANGAP1P46060 587 aaPredicted RBP21.92■■□□□ 1.1
CUX2-201ENST00000261726 CENPBP07199 599 aaPredicted RBP21.79■■□□□ 1.08
CUX2-201ENST00000261726 ATP1B4Q9UN42 357 aaPredicted RBP21.77■■□□□ 1.07
CUX2-201ENST00000261726 YTHDC1Q96MU7 727 aaKnown RBP21.55■■□□□ 1.04
CUX2-201ENST00000261726 NEFLP07196 543 aa21.54■■□□□ 1.04
CUX2-201ENST00000261726 MYT1Q01538 1121 aa21.43■■□□□ 1.02
CUX2-201ENST00000261726 ZEB1P37275 1124 aaPredicted RBP21.39■■□□□ 1.01
CUX2-201ENST00000261726 UBTFP17480 764 aaKnown RBP21.27■■□□□ 1
CUX2-201ENST00000261726 TRIM41Q8WV44 630 aa21.27■■□□□ 1
CUX2-201ENST00000261726 DAXXQ9UER7 740 aaPredicted RBP21.19■□□□□ 0.98
CUX2-201ENST00000261726 POLR3GLQ9BT43 218 aa21.11■□□□□ 0.97
CUX2-201ENST00000261726 PPARGC1BQ86YN6 1023 aaKnown RBP21.11■□□□□ 0.97
CUX2-201ENST00000261726 MYT1LQ9UL68 1186 aa21.07■□□□□ 0.96
CUX2-201ENST00000261726 CNGB1Q14028 1251 aaPredicted RBP20.99■□□□□ 0.95
CUX2-201ENST00000261726 ITGAEP38570 1179 aa20.89■□□□□ 0.93
CUX2-201ENST00000261726 CHIC1Q5VXU3 224 aa20.87■□□□□ 0.93
CUX2-201ENST00000261726 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.85■□□□□ 0.93
CUX2-201ENST00000261726 HNRNPUL2Q1KMD3 747 aaKnown RBP20.85■□□□□ 0.93
CUX2-201ENST00000261726 SLC4A1APQ9BWU0 796 aaKnown RBP20.79■□□□□ 0.92
CUX2-201ENST00000261726 ZNF316A6NFI3 1004 aaPredicted RBP20.68■□□□□ 0.9
CUX2-201ENST00000261726 CLSPNQ9HAW4 1339 aa20.65■□□□□ 0.9
CUX2-201ENST00000261726 RTL5Q5HYW3 569 aaPredicted RBP20.58■□□□□ 0.89
CUX2-201ENST00000261726 TRIM26Q12899 539 aaPredicted RBP20.56■□□□□ 0.88
CUX2-201ENST00000261726 HRCP23327 699 aa20.52■□□□□ 0.87
CUX2-201ENST00000261726 CCDC180Q9P1Z9 1646 aa20.28■□□□□ 0.84
CUX2-201ENST00000261726 BCL11AQ9H165 835 aa20.27■□□□□ 0.84
CUX2-201ENST00000261726 LOC105371045A0A1W2PR82 267 aa20.24■□□□□ 0.83
CUX2-201ENST00000261726 BCANQ96GW7 911 aa20.23■□□□□ 0.83
CUX2-201ENST00000261726 ABCC9O60706 1549 aa20.22■□□□□ 0.83
CUX2-201ENST00000261726 SLC24A1O60721 1099 aa20.21■□□□□ 0.83
CUX2-201ENST00000261726 ZBTB47Q9UFB7 747 aaPredicted RBP20.19■□□□□ 0.82
CUX2-201ENST00000261726 FAM50AQ14320 339 aaKnown RBP20.18■□□□□ 0.82
CUX2-201ENST00000261726 TRIM52Q96A61 297 aa20.17■□□□□ 0.82
CUX2-201ENST00000261726 DIEXFQ68CQ4 756 aaKnown RBP20.16■□□□□ 0.82
CUX2-201ENST00000261726 NEUROD1Q13562 356 aa20.12■□□□□ 0.81
CUX2-201ENST00000261726 ZNF326Q5BKZ1 582 aaKnown RBP20.08■□□□□ 0.81
CUX2-201ENST00000261726 CANXP27824 592 aaKnown RBP20.02■□□□□ 0.8
CUX2-201ENST00000261726 CDK11AQ9UQ88 783 aaPredicted RBP19.99■□□□□ 0.79
CUX2-201ENST00000261726 ZCCHC6Q5VYS8 1495 aaKnown RBP19.94■□□□□ 0.78
CUX2-201ENST00000261726 ANP32CO43423 234 aa19.92■□□□□ 0.78
CUX2-201ENST00000261726 GTF3C3Q9Y5Q9 886 aa19.87■□□□□ 0.77
CUX2-201ENST00000261726 NEFMP07197 916 aa19.82■□□□□ 0.76
CUX2-201ENST00000261726 NPM2Q86SE8 214 aaKnown RBP19.8■□□□□ 0.76
CUX2-201ENST00000261726 FBLN2P98095 1184 aa19.72■□□□□ 0.75
CUX2-201ENST00000261726 ANP32AP39687 249 aaKnown RBP19.71■□□□□ 0.75
CUX2-201ENST00000261726 EIF5BO60841 1220 aaKnown RBP19.7■□□□□ 0.74
CUX2-201ENST00000261726 SCRIBQ14160 1630 aa19.7■□□□□ 0.74
CUX2-201ENST00000261726 ARID3CA6NKF2 412 aa19.63■□□□□ 0.73
CUX2-201ENST00000261726 PABPN1Q86U42 306 aaKnown RBP eCLIP19.63■□□□□ 0.73
CUX2-201ENST00000261726 ANP32BQ92688 251 aaKnown RBP19.63■□□□□ 0.73
CUX2-201ENST00000261726 HSP90AA1P07900 732 aaKnown RBP19.62■□□□□ 0.73
CUX2-201ENST00000261726 PLPPR3Q6T4P5 718 aa19.55■□□□□ 0.72
CUX2-201ENST00000261726 ZNF777Q9ULD5 760 aaPredicted RBP19.5■□□□□ 0.71
CUX2-201ENST00000261726 P3H3Q8IVL6 736 aa19.48■□□□□ 0.71
CUX2-201ENST00000261726 ARXQ96QS3 562 aa19.45■□□□□ 0.7
CUX2-201ENST00000261726 CHGAP10645 457 aaKnown RBP19.42■□□□□ 0.7
CUX2-201ENST00000261726 UPF2Q9HAU5 1272 aaKnown RBP19.42■□□□□ 0.7
CUX2-201ENST00000261726 ESF1Q9H501 851 aaKnown RBP19.41■□□□□ 0.7
CUX2-201ENST00000261726 SALL2Q9Y467 1007 aaPredicted RBP19.4■□□□□ 0.7
CUX2-201ENST00000261726 STAG3Q9UJ98 1225 aa19.39■□□□□ 0.69
CUX2-201ENST00000261726 FKBP8Q14318 412 aa19.39■□□□□ 0.69
CUX2-201ENST00000261726 ACIN1Q9UKV3 1341 aaKnown RBP19.33■□□□□ 0.69
CUX2-201ENST00000261726 NBR1Q14596 966 aa19.32■□□□□ 0.68
CUX2-201ENST00000261726 FAM9BQ8IZU0 186 aa19.31■□□□□ 0.68
CUX2-201ENST00000261726 GLIPR1L2Q4G1C9 344 aa19.3■□□□□ 0.68
CUX2-201ENST00000261726 RB1CC1Q8TDY2 1594 aa19.27■□□□□ 0.68
CUX2-201ENST00000261726 HNRNPUQ00839 825 aaKnown RBP eCLIP19.27■□□□□ 0.68
CUX2-201ENST00000261726 SCAF1Q9H7N4 1312 aaKnown RBP19.26■□□□□ 0.67
CUX2-201ENST00000261726 A0A0G2JS52 829 aa19.26■□□□□ 0.67
CUX2-201ENST00000261726 CDK11BP21127 795 aaKnown RBP19.25■□□□□ 0.67
CUX2-201ENST00000261726 NACADO15069 1562 aa19.22■□□□□ 0.67
CUX2-201ENST00000261726 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.16■□□□□ 0.66
CUX2-201ENST00000261726 CCDC136Q96JN2 1154 aa19.16■□□□□ 0.66
CUX2-201ENST00000261726 TONSLQ96HA7 1378 aa19.16■□□□□ 0.66
CUX2-201ENST00000261726 PLEKHG5O94827 1062 aa19.15■□□□□ 0.66
CUX2-201ENST00000261726 DCAF1Q9Y4B6 1507 aa19.15■□□□□ 0.66
CUX2-201ENST00000261726 DDX10Q13206 875 aaKnown RBP19.14■□□□□ 0.65
CUX2-201ENST00000261726 ZBTB7CA1YPR0 619 aa19.12■□□□□ 0.65
CUX2-201ENST00000261726 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.11■□□□□ 0.65
CUX2-201ENST00000261726 WDR43Q15061 677 aaKnown RBP eCLIP19.11■□□□□ 0.65
CUX2-201ENST00000261726 TMC1Q8TDI8 760 aa19.1■□□□□ 0.65
CUX2-201ENST00000261726 SENP3Q9H4L4 574 aaPredicted RBP19.08■□□□□ 0.64
CUX2-201ENST00000261726 MYH16Q9H6N6 1097 aa19.05■□□□□ 0.64
CUX2-201ENST00000261726 IRX6P78412 446 aaPredicted RBP19.05■□□□□ 0.64
CUX2-201ENST00000261726 TULP1O00294 542 aaPredicted RBP19.03■□□□□ 0.64
CUX2-201ENST00000261726 KDM2AQ9Y2K7 1162 aa19.02■□□□□ 0.63
CUX2-201ENST00000261726 CHIC2Q9UKJ5 165 aa19■□□□□ 0.63
CUX2-201ENST00000261726 NPM1P06748 294 aaKnown RBP eCLIP18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms